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2701 commits

Author SHA1 Message Date
Javier
bb3239903b New package - r-knitr (#2407) 2016-11-24 12:19:01 -08:00
Javier
8949e67ce3 New package - r-gistr (#2406) 2016-11-24 12:18:57 -08:00
Javier
85638aad03 New package - r-formatr (#2405) 
* New package - r-formatr

* Block comment should start with '# '
 2016-11-24 12:18:47 -08:00
Javier
4214281ab3 New package - r-evaluate (#2404) 2016-11-24 12:18:41 -08:00
Gregory Lee
96bc3ff8f6 added qt variants for pyqt to build (#2389) 2016-11-23 14:10:12 -08:00
Jon Rood
a6db0bfae2 Updating SuperLU package file with ability to build version 4.3. (#2390) 
* Updating SuperLU package file with ability to build version 4.3 (before they added cmake) with external blas or internal blas, and added capability to build the latest version 5.2.1 (with cmake) with internal blas.

* Updating SuperLU package file with suggested changes, i.e. reorganizing installation methods based on version, adding cmake dependency when necessary, removing any use of internal blas, and also adding fpic variant.

* Fixing flake8 failures.
 2016-11-23 13:26:00 -08:00
Javier
7bda4e98b3 New package - r-catools (#2394) 
* New package - r-catools

* Splitting lines to pass flake8 travis test
 2016-11-23 10:57:47 -08:00
Javier
b085ce9e94 New package - r-partykit (#2395) 
* New package - r-partykit

* Splitting lines to pass flake8 travis test
 2016-11-23 10:57:23 -08:00
Javier
0eddf8421d New package - r-formula (#2396) 2016-11-23 10:56:59 -08:00
Javier
d6710a6aaf New package - r-deoptim (#2397) 2016-11-23 10:56:37 -08:00
Javier
74e6db9060 New package - r-c50 (#2393) 
* Adding R library r-bitops

* New package - r-c50
 2016-11-23 10:56:13 -08:00
Jon Rood
f8d038c0b8 New package yaml-cpp (#2399) 
* Adding new package for yaml-cpp.

* Removing gcc specific c++11 flag. Adding fpic variant. Fixing formatting.
 2016-11-23 10:54:22 -08:00
Matthew Scott Krafczyk
1fbe67af3d Update flex package url's and versions (#2384) 
* Update flex package url's and versions

The old sourceforge page for flex is now defunct. While version 2.6.0
still downloads fine, later versions are no longer hosted there.
Development continues on github. I've adjusted urls to point to this
new location.

In addition, from 2.6.0 onwards, a new naming scheme for releases seems
to have been adopted. I've created a url_for_version function to sort
this out.

* Change flex to an AutotoolsPackage

Also move the url_for_version function to the end of the package
definition.

* Implement the autoreconf function for flex
 2016-11-22 14:30:25 -08:00
becker33
5e73266572 Merge pull request #2291 from ax3l/topic-icet 
Packages: Add IceT
 2016-11-21 14:27:17 -08:00
Andrey Prokopenko
3954fc8545 llvm-lld: minor misprint fix 2016-11-21 16:22:31 -05:00
Denis Davydov
a5fb33b0e4 python: symlink lib64/python2.7/lib-dynload/ to lib/python2.7/lib-dynload/ (#2295) 2016-11-16 07:29:08 -07:00
becker33
93287b950b Merge pull request #1547 from citibeth/efischer/160816-PyPathspec 
py-pathspec: New package
 2016-11-14 15:13:21 -08:00
Axel Huebl
4b82d881dc
Add Package: IceT 
Adds the IceT compositing library from Sandia/Kitware.
Most default functionality needed for image compositing is
added, OpenGL acceleration for very large displays is disabled.

Downstream usage:
  most VTK based software which supports parallel image compositing,
such as VisIt, Paraview and in our use-case
[ISAAC](https://github.com/ComputationalRadiationPhysics/isaac).
 2016-11-13 16:50:14 -07:00
Kelly Thompson
05c6c40e36 Force the recipe for Lua to use the spack compiler. (#2299) 
* Force the recipe for Lua to use the spack compiler.

I'm not sure how the old recipe worked for anyone. The Lua Makefiles set
`CC=gcc` and for my spack environment the first `gcc` found in my `PATH` is
`$SPACK_ROOT/lib/spack/env/gcc`, which is a directory. This caused the build
to fail. My change drops the `-std=gnu99`, but this option doesn't appear
to be required for a sucessful build.

* Preserve the '-std=gnu99' compile option.
 2016-11-12 21:46:59 -07:00
Elizabeth Fischer
8c0c3263e2 Simplify the CMake build to make it more robust. (#2325) 
* Simplify the CMake build to make it more robust.

* ncurses on by default.
 2016-11-12 21:26:40 -07:00
Todd Gamblin
a5934fcaa6 Remove automake dep in libelf. (#2328) 2016-11-12 21:25:14 -07:00
Adam J. Stewart
09470ec672 Add VizGlow package (#2298) 2016-11-10 21:55:27 -08:00
Axel Huebl
42cc997aea Packages: Add Jansson (#2287) 
This adds the built recipe for
[Jansson](http://www.digip.org/jansson/),
*a C library for encoding, decoding and manipulating JSON data.*

GitHub Repo: https://github.com/akheron/jansson

Downstream Usage:
  In [ISAAC](https://github.com/ComputationalRadiationPhysics/isaac)
which is an *in situ visualization library* based on
  [alpaka](https://github.com/ComputationalRadiationPhysics/alpaka)
and/or CUDA which is used in
  [PIConGPU](https://github.com/ComputationalRadiationPhysics/picongpu).
 2016-11-10 21:52:49 -08:00
Denis Davydov
7cb756cdbb tree: use Spack's compiler and fix installation on macOS (#2293) 2016-11-10 21:52:22 -08:00
Axel Huebl
26ed2327ae Packages: Add libwebsockets (#2288) 
This adds the built recipe for
[libwebsockets](https://libwebsockets.org/lws-api-doc-master/html/index.html),
a *C library for lightweight websocket clients and servers*.

GitHub Repo: https://github.com/warmcat/libwebsockets

Downstream Usage:
  In [ISAAC](https://github.com/ComputationalRadiationPhysics/isaac)
which is an *in situ visualization library* based on
  [alpaka](https://github.com/ComputationalRadiationPhysics/alpaka)
and/or CUDA which is used in
  [PIConGPU](https://github.com/ComputationalRadiationPhysics/picongpu).
 2016-11-10 21:51:50 -08:00
Adam J. Stewart
99cf7b4ab3 Run HDF 5 tests post-installation (#2297) 2016-11-10 21:50:32 -08:00
christianbaensch
2e11e7e456 Update package.py with/out CUDA support (#2266) 
Adding some lines to prevent from using any CUDA stuff, if NVIDIA CUDA Developement Kit was installed before.
 2016-11-09 07:37:40 -08:00
Massimiliano Culpo
e5edac8af6 zlib, tar: passed to AutotoolsPackage (#2273) 2016-11-09 07:37:08 -08:00
Gregory Lee
1b64213b10 added numpy version 1.11.2 and moved url to pypi.io (#2286) 2016-11-09 07:35:30 -08:00
Oliver Breitwieser
98f27a89ec Add py-pudb package (#2289) 2016-11-09 07:34:30 -08:00
Oliver Breitwieser
68f79043aa Add 1.5.3 for py-matplotlib and moved to pypi.io (#2271) 
* Added version 1.5.3 for py-matplotlib

* Updated url to pypi.io so all versions are properly downloaded.
 2016-11-09 07:34:17 -08:00
Sergey Kosukhin
4457c6a2ad Updated environment-modules package: (#2279) 
Added 'lib64' directory as a possible option where tclConfig.sh file can be found.
 2016-11-08 07:19:31 -08:00
Pramod Kumbhar
ba58a9f30d fix tau installation issue (#2269) 
* fix tau installation issue : setup_environment() is
called before install phase when 'Makefile.*' doesn't
exist (causing list index out of range error).

* Added detailed comment suggested by @alalazo
 2016-11-08 07:18:14 -08:00
Gregory Lee
1f5ca24197 Merge pull request #2197 from skosukhin/ext_bugfix 
Updated python package reflecting the changes in 9347f86
 2016-11-07 16:05:57 -08:00
Adam J. Stewart
ca5f713282 Further restrict versions of GCC patched (#2259) 2016-11-06 15:31:48 -08:00
Michael Kuron
6f2c05b888 Add PFFT parallel FFT package (#2255) 
* Add PFFT parallel FFT package

* pfft: fix non-double precision
 2016-11-05 12:19:19 -07:00
Massimiliano Culpo
6c1113769b mpich: updated package to build_systems (#2254) 
* mpich: updated package to build_systems

* qa : flake8 issues
 2016-11-05 11:23:57 -07:00
Adam J. Stewart
6d1c32d46a Add STAR-CCM+ package (#2202) 
* Add STAR-CCM+ package

* Cleanup commented out code
 2016-11-04 23:16:20 -07:00
Sergey Kosukhin
6dfc536ecd Updated py-netcdf: added dependency on py-setuptools. (#2213) 2016-11-04 23:15:55 -07:00
George Hartzell
bcee2ca162 New texlive release, updating the digest to match (#2218) 
* November 1 seems to have brought a new texlive release, updating the
digest to match.

Also switching the url from their automagic mirror to an explicit
site to avoid inconsistencies during their updates.

It seems like only yesterday (#2073) that I updated this....

* Add comment to url warning about mirror updates

Add a comment to the download info warning to use a
specific site rather than the mirror, to avoid wobbles
during their asynchronous updates.

* Fix typo ('to no' -> 'do not')
 2016-11-04 23:14:48 -07:00
Axel Huebl
c3d9dda0e5 libSplash: Add 1.6.0 Release (#2244) 
* libSplash: Add 1.6.0 Release

Add the latest release of libSplash, version 1.6.0.

* Fix flake8 checks (another loop inversion issue)
 2016-11-04 16:27:17 -07:00
Gregory Lee
ee6eb508cb patch older config.guess for newer architectures (#2221) 2016-11-04 12:12:37 -07:00
Jeffrey Salmond
472ad39db3 updates to matio package (#2243) 
* updates to matio package

- update to a AutoTools package
- add variants for hdf5 and zlib
- add latest version

* fix flake8 error
 2016-11-04 11:56:47 -07:00
Jeffrey Salmond
f01b9797d7 opencoarrays package fixes and new version (#2239) 
* fix and simplify opencoarrays package using new CMakePackge methods

* add new version
 2016-11-04 11:50:25 -07:00
Jeffrey Salmond
a135a1245a tweaks to packages using CMakePackage (#2241) 
* fix to trilinos package

* fix to dealii package

* fix to everytrace package

* fix to everytrace-example package

* changes suggested by @davydden
 2016-11-04 10:57:53 -07:00
Denis Davydov
29f81b7775 trilinos: switch to CMakePackage and minor cleanup (#2226) 2016-11-04 02:00:03 -07:00
Denis Davydov
453331dba0 dealii: switch to CMakePackage and minor cleanup (#2237) 2016-11-04 01:46:39 -07:00
Pramod Kumbhar
b706da1109 Set TAU_MAKEFILE env variable (#2210) 
* In order to use TAU module, we have to set TAU_MAKEFILE env variable.

* updated with suggestions from @citibeth
 2016-11-02 15:05:47 -05:00
Sergey Kosukhin
8fb5cb2137 Added first version of the NCL package. (#2195) 
Without GRIB2 and HDF-EOS support yet.
 2016-11-02 10:20:57 -05:00
Peter Doak
1aa5d4875e Nmap package added (#2206) 
* works to build newest version of nmap with gcc@5.3.0

* formatting

* clean up
 2016-11-01 16:10:39 -07:00