Commit graph

32894 commits

Author SHA1 Message Date
Harmen Stoppels
6d5d1562bd
fmt: 10.1.1 (#39664) 2023-08-29 10:47:42 +02:00
Adam J. Stewart
70c71e8f93
Add style tool to fix fish file formatting (#39155) 2023-08-28 22:16:44 -05:00
Jonathon Anderson
d9d1eb24f9
modules: copy matched config to prevent bleed (#39421) 2023-08-28 15:03:29 -07:00
kwryankrattiger
cef59ad0bf
Patch VTK to enable python 3.8 in VTK 8.2 (#38735)
* VTK: Add patch for python 3.8 support

* CI: Re-enable VisIt in CI

* Configure spec matrix for stack with VisIt

* Add pugixml dep for 8.2.0

* Make VTK and ParaView consistent on proj dep

* OpenMPI 3: provides MP support by default

* Add details on proj dep in ParaView

* Add python 3.8 to test mock repo

* Patches to get VisIt VTK interface

* CI: Disable VisIt with GUI in DAV
2023-08-28 16:56:31 -05:00
Brian Vanderwende
a1e117a98b
singularityce: arg handling fix (#39663) 2023-08-28 15:52:57 -04:00
Loris Ercole
cb855d5ffd
kokkos: avoid setting multiple cuda_arch (#38723)
The kokkos package does not support building with cuda with multiple
`cuda_arch`. An error is raised if multiple `cuda_arch` are specified.
2023-08-28 14:13:05 -04:00
Matthew Thompson
3866ff0096
mapl: add 2.40, deprecate old versions (#39615)
* Add MAPL 2.40, deprecated old versions
* Undo some variant changes
* style fixes
* Make variants reflect Cmake options
* Remove pnetcdf variant
* Clean up depends_on
2023-08-28 11:11:03 -07:00
Todd Gamblin
6dc167e43d
security: change SECURITY.md to recommend GitHub's private reporting (#39651)
GitHub's beta private security issue reporting feature is enabled on the Spack repo now,
so we can change `SECURITY.md` to recommend using it instead of `maintainers@spack.io`.

- [x] Update `SECURITY.md` to direct people to the GitHub security tab.
- [x] Update working in `SECURITY.md` to say "last two major releases" with a link to
      the releases page, instead of explicitly listing release names. This way we don't have
      to update it (which we keep forgetting to do).
2023-08-28 18:06:17 +00:00
Ashwin Kumar Karnad
0fd085be8e
octopus: specify the scalapack library not the directory (#39109)
* octopus: specify the scalapack library not the directory
* octopus: use spec.scalapack.libs.ld_flags
2023-08-28 09:57:24 -07:00
Massimiliano Culpo
74fba221f1
GnuPG: add v2.4.3 (#39654)
Also updates a few dependencies
2023-08-28 10:58:16 -04:00
Harmen Stoppels
deeeb86067
Fix a few issues with git versions / moving targets in packages (#39635) 2023-08-28 15:48:13 +02:00
Jen Herting
98daf5b7ec
py-scikit-optimize: add v0.9.0 and move gptune patch (#38738)
Co-authored-by: liuyangzhuan <liuyangzhuan@gmail.com>
2023-08-28 07:43:25 -04:00
Harmen Stoppels
8a3d98b632
Remove mxnet from darwin aarch64 since theres no supported release (#39644) 2023-08-28 12:21:10 +02:00
Harmen Stoppels
0cc945b367
libarchive: use openssl by default (#39640) 2023-08-28 09:23:33 +02:00
Stan Tomov
e732155e8c
magma: add v2.7.2 (#39645) 2023-08-28 08:57:59 +02:00
Harmen Stoppels
c07fb833a9
libarchive: new versions (#39646) 2023-08-28 08:52:59 +02:00
Harmen Stoppels
7d566b481f
libuv: add versions up to v1.46.0 (#39647) 2023-08-28 08:52:13 +02:00
Christopher Christofi
a72e5e762e
py-igraph: new package with version 0.10.6 (#39179) 2023-08-27 14:46:21 -05:00
Nichols A. Romero
0eb22ef770
llvm: ensure runtimes set rpaths (#39641)
Ensure that CMAKE_INSTALL_RPATH_USE_LINK_PATH is propagated to sub-make when building runtimes.
2023-08-27 08:41:59 +02:00
Peter Scheibel
95f78440f1
External ROCm: add example configuration (#39602)
* add an example of an external rocm configuration
* include more info
* generalize section to all GPU support
2023-08-26 15:46:25 -07:00
John W. Parent
74a51aba50
CMake: add versions 3.26.4|5 and 3.27.* (#39628)
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-08-26 21:26:41 +02:00
Daryl W. Grunau
b370ecfbda
py-scipy: re-apply scipy/scipy#14935 workaround (#39555)
* re-apply scipy/scipy#14935 workaround

* restrict to %intel and eliminate Version() check

---------

Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2023-08-26 08:44:57 -05:00
LydDeb
04d55b7600
py-dask: use py-jinja2 versions from 2.10.3 (#39631)
In depends_on py-jinja2, use versions from 2.10.3, instead of strict equality, according to the pyproject.toml of dask 2023.4.1
2023-08-26 00:56:39 -05:00
Tim Gymnich
d695438851
Update package.py (#39619) 2023-08-26 00:55:03 -05:00
Nichols A. Romero
f0447d63ad
llvm: fix +lldb optional deps and add lua variant (#39579)
* llvm: fix +lldb optional deps, add lua variant

* use good old conflicts

---------

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-08-25 17:46:33 -05:00
Mikael Simberg
e8a7a04f14
Add gperftools 2.12 (#39623) 2023-08-25 14:57:00 -07:00
Paul R. C. Kent
23316f0352
QMCPACK: add v3.17.1 (#39626) 2023-08-25 14:55:36 -07:00
Brian Van Essen
b3433cb872
LBANN package: strip hostname on non-LC systems. (#39601) 2023-08-25 14:55:24 -07:00
James Smillie
349ba83bc6
Windows symlinking support (#38599)
This reapplies 66f7540, which adds supports for hardlinks/junctions on
Windows systems where developer mode is not enabled.

The commit was reverted on account of multiple issues:

* Checks added to prevent dangling symlinks were interfering with
  existing CI builds on Linux (i.e. builds that otherwise succeed were
  failing for creating dangling symlinks).
* The logic also updated symlinking to perform redirection of relative
  paths, which lead to malformed symlinks.

This commit fixes these issues.
2023-08-25 12:18:19 -07:00
Thomas-Ulrich
ecfd9ef12b
add memalign option to petsc to be used with tandem (#37282) 2023-08-25 09:03:53 -05:00
Loris Ercole
4502351659
intel-oneapi-mkl: add hpcx-mpi to the list of supported MPI libs (#39625)
Co-authored-by: Loris Ercole <a-lercole@microsoft.com>
2023-08-25 08:53:22 -04:00
Adam J. Stewart
8a08f09ac0
py-scipy: add v1.11.2 (#39515) 2023-08-25 06:03:22 -04:00
Erik Heeren
60ecd0374e
arrow: explicitly disable RE2 and UTF8PROC flags when not in dependencies (#35353)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-08-25 09:04:06 +02:00
Richard Berger
52ccee79d8
legion: drop cray-pmi dependency (#39620)
There are other ways to enforce cray-pmi being loaded in environments
that use cray-mpich. This avoids breaking environments where this was
already the case and avoids forcing them to declare an external.
2023-08-25 08:51:38 +02:00
dependabot[bot]
7f0f1b63d6
build(deps): bump actions/checkout from 3.5.3 to 3.6.0 (#39617)
Bumps [actions/checkout](https://github.com/actions/checkout) from 3.5.3 to 3.6.0.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](c85c95e3d7...f43a0e5ff2)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-25 08:27:56 +02:00
Adam J. Stewart
b65f1f22ec
py-sphinx: add v7.2.3 (#39612) 2023-08-24 18:30:13 -07:00
Richard Berger
e9efa1df75
legion: depend on cray-pmi when using gasnet and cray-mpich (#39614) 2023-08-24 18:17:24 -07:00
Jonas Thies
884a5b8b07
phist: new version 1.12.0 (#39616) 2023-08-24 18:12:42 -07:00
AMD Toolchain Support
91d674f5d0
AOCL spack recipes for 4.1 release w. new AOCL-Utils library (#39489)
* AOCC and AOCL spack recipes for 4.1 release
* Fix broken checksum
* remove blank line
* Add missing `@when` for 4.1 only function

---------

Co-authored-by: vijay kallesh <Vijay-teekinavar.Kallesh@amd.com>
2023-08-24 18:05:39 -07:00
Matt Drozt
76fbb8cd8f
[py-smartsim] New Package (#39306)
* Create a smartsim package

* rm ss 0.4.2

* no py upper bound, add build dep

* add setup_build_env

* add comment to find ml deps lower bounds

* Apply suggestions from code review

Correct dep versions, use `python_purelib`

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove the cuda/rocm vars

* point editors to bin deps version constraints

* Apply suggestions from code review

Loosen `py-smartredis` constraint, enforce `setup.cfg` py version

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* style

* rm rai lower bound

* lower bound setuptools

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-08-24 18:03:52 -04:00
Wouter Deconinck
0f3f2a8024
py-particle: new versions through 0.23.0 (#39547)
* py-particle: new versions through 0.23.0

* py-particle: depends_on py-deprecated
2023-08-24 16:22:33 -05:00
Frédéric Simonis
5a5f774369
preCICE: prepare for version 3 (#39486) 2023-08-24 14:04:36 -04:00
Adam J. Stewart
f5212ae139
py-sphinx: add v7.2 (#39513) 2023-08-24 12:07:24 -04:00
Sajid Ali
4b618704bf
add magma variant to strumpack (#39224)
* add magma variant to strumpack
* clarify conflicts to be excuive to rocm/cuda, without it +magma+cuda fails as it is ~rocm
   modified:   var/spack/repos/builtin/packages/strumpack/package.py
* add missing depends_on for magma variant
2023-08-24 08:39:24 -07:00
Harmen Stoppels
46285d9725
zlib-ng: build system patches (#39559) 2023-08-24 12:13:22 +02:00
eugeneswalker
36852fe348
h5bench: add e4s tag (#39595) 2023-08-24 08:58:07 +02:00
Harmen Stoppels
8914d26867
rebuild-index: fix race condition by avoiding parallelism (#39594) 2023-08-24 08:26:56 +02:00
Massimiliano Culpo
fdea5e7624
Remove leftover attributes from parser (#39574)
#35042 introduced lazy hash parsing, but didn't remove a
few attributes from the parser that were needed only for
concrete specs

This commit removes them, since they are effectively
dead code.
2023-08-24 08:04:43 +02:00
dependabot[bot]
ca1e4d54b5
build(deps): bump sphinx from 7.2.2 to 7.2.3 in /lib/spack/docs (#39603)
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.2 to 7.2.3.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.2...v7.2.3)

---
updated-dependencies:
- dependency-name: sphinx
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-24 07:55:14 +02:00
Ryan Mulhall
656528bbbb
fms: add v2023.02 and v2023.01.01 (#39434)
* Add 2023.02 and 2023.01.01 with variant for mpp_io and fms_io deprecation

Co-authored-by: rem1776 <Ryan.Mulhall@noaa.gov>
2023-08-24 03:58:50 +02:00