Commit graph

13323 commits

Author SHA1 Message Date
Matthias Diener
776f99a414 git: add version 2.20.1 (#10130) 2018-12-17 17:36:57 -06:00
Omar Awile
d313291c2d Added RocksDB package (#10084)
* Added rocksdb package

* Fixes based on @tristan0x and @pramodk comments

* Cleanup

* A couple minor fixes based on @adamjstewart 's advice

* Fixed flake8 errors
2018-12-17 17:36:45 -06:00
Adam J. Stewart
c2b546fa97
Add missing gettext dependency to at-spi2-core (#10124) 2018-12-17 14:00:53 -06:00
Todd Gamblin
37954a78ff
Revert "mark: Create new package. (#7069)" (#10131)
This reverts commit 90b34c96d6.
2018-12-17 11:15:32 -08:00
Adam J. Stewart
bcd65906c9
Add latest version of gdk-pixbuf (#10126) 2018-12-17 13:04:40 -06:00
Adam J. Stewart
5964d14936
Add latest version of ghostscript (#10123) 2018-12-17 13:04:16 -06:00
Adam J. Stewart
fe73043170
Add missing libbsd dependency to libxdmcp (#10122) 2018-12-17 13:04:00 -06:00
Adam J. Stewart
9913b3b846
Add latest version of libbsd (#10121) 2018-12-17 13:03:43 -06:00
Adam J. Stewart
2d0ddd5d11
Add help messages to spack gpg subcommands (#10117) 2018-12-17 13:02:51 -06:00
Adam J. Stewart
d5d64bdf3b
spack buildcache: --allow_root -> --allow-root (#10115) 2018-12-17 13:02:28 -06:00
Adam J. Stewart
29f26da04d
Update Spack's Bash completion script (#10114)
* Update Spack's Bash completion script

* spack mirror create options changed
2018-12-17 13:02:09 -06:00
Adam J. Stewart
a8a0aee3f3
Add patch to fix windows.h include in freetype (#10075)
* Add patch to fix windows.h include in freetype

* Fix patch
2018-12-17 13:00:43 -06:00
Mark Olesen
cbedd507cf ENH: fixes and updates for openfoam-com build (#10065)
- previous removal of FOAM_EXT_LIBBIN (ThirdParty) from the environment
  during the build could lead to the system scotch library being found
  instead of the spack installation.

  Avoid this largely cosmetic change to the setting in favour of
  improved build robustness. These modifications will be largely
  superfluous in the 1812 release anyhow.

- Split the patching algorithm into 'regular' and '@:1806' since the
  next versions of openfoam will again need fewer patches.

- Add hook into foamCreateManpage to be used where available
2018-12-17 12:58:09 -06:00
Greg Sjaardema
ccce3b79ab SEACAS: Add preliminary support for seacas package (#9972)
* SEACAS: Add preliminary support for seacas package

* Eliminate leftover from package I copied from.

* And remove another stray line

Sorry, thought I had checked this better...

* SEACAS: Shorten long lines; fixup indentation

* SEACAS: Remove unused os import

* Add PLASMA version 18.11.0 and Lua variant (#9689)

* Add PLASMA 18.11.1 with optional Lua and test for headers

* New versions for a few python modules (#9969)

* py-jupyter-console: Add version 5.2.0

* py-jupyter-core: add version 4.4.0

* py-lxml: add version 4.2.5

* py-zmq: add version 17.1.2

* py-terminado: add version 0.8.1

* py-pexpect: add version 4.6.0

* py-pytables: add version 3.4.4

* SEACAS: Default to mpi on

* SEACAS: Modify to reduce variants

Instead of using an `allpkgs` or explicitly specifying each individual subset,
changed to minimize variants:
 * By default, the exodus and IOSS libraries are built and a few
   executables directly related to the IOSS library.
 * variant `common` defaults to True and builds the "common" seacas
   applications.  This is based on my definition, so there may be
   could be some discussion on what belongs here.
 * variant `legacy` defaults to True and builds the remainder of the
   seacas applications.  These are still used, but mainly in more
   esoteric areas.  Might be better to default to False, but I wanted
   default to just build everything which is what other SEACAS builds
   always do...

Removed the `kokkos` variants for now as I need to do some more
thinking on how best to support this.  Not often used currently,
so shouldn't be an issue.

Cleaned up other issues raised by Adam and found by me.

* SEACAS: Address flake8 issues

* SEACAS: Clean up variant package logic

Fixed package variant logic.
Consolidated some other variant handling logic
Other minor refactors for hopefully better readability

* SEACAS: Fix flake8 error

Missing whitespace around operator fixed.
2018-12-17 12:57:31 -06:00
Ricardo Silva
f979b974a5 GDL: python integration fixes (#9936)
* GDL: python integration fixes

* renamed python-related variants to follow the convention
* building the Python module requires patches currently targetting 0.9.8 othwerwise asking for the Python module *only* builds the Pyhton module
* building the python module also requires patching the vendored (with the GDL) antlr to be built as a shared library

* Typo

Co-Authored-By: rmsds <ricardo.d.silva@gmail.com>

* Rename embed-python variant to embed_python
2018-12-17 12:47:16 -06:00
TZ
a02cf107b5 zoltan: rely on MPI wrappers instead of guessing MPI libraries (#8986)
* zoltan: only add gussed MPI libs if no MPI wrappers are used

- if MPI-wrappers are used for compilation, we can assume that
  linking works without manually specifying MPI libs
  (guessing may result in wrong libs, cf. #8979)
- thus, only guess the NPI libs and add them explicitly if no
  MPI-wrappers are used
- use llnl.util.filesystem.find_libraries instead of a locally
  defined routine to guess the MPI libs if needed
  (cf. #8979)

* zoltan: rely on MPI-wrappers to know the required MPI libs
2018-12-17 12:45:49 -06:00
lingnanyuan
90b34c96d6 mark: Create new package. (#7069)
* mark: Create new package.

* mark: change description.

* mark: change description.

* mark: Delete set_up environment.

* mark: replace join_path(prefix.bin, mark) with prefix.bin.mark
2018-12-17 12:34:16 -06:00
Adam J. Stewart
ae307f5b0f Add latest version of atk (#10125) 2018-12-17 08:48:31 +01:00
jthies
17c77533ee packages/phist: new version 1.7.5 (#10120) 2018-12-16 13:35:44 -06:00
Peter Scheibel
0217a651c8 mirrors: patches are now properly added to mirrors (#8993)
* This fixes a number of bugs:

  * Patches were not properly downloaded and added to mirrors.

  * Mirror create didn't respect `list_url` in packages

  * Update the `spack mirror` command to add all packages in the
    concretized DAG (where originally it only added the package specified
    by the user). This is required in order to collect patches that are specified
    by dependents. Example:
      * if X->Y and X requires a patch on Y called Pxy, then Pxy will only
        be discovered if you create a mirror with X.

  * replace confusing --one-version-per-spec option for `spack mirror create`
    with --versions-per-spec; support retrieving multiple versions for 
    concrete specs

* Implementation details:

  * `spack mirror create` now uses regular staging logic to download files 
    into a mirror, instead of reimplementing it in `add_single_spec`.

  * use a separate resource caching object to keep track of new
    resources and already-existing resources; also accepts storing
    resources retrieved from a cache (unlike the local cache)

  * mirror cache object now stores resources that are considered
    non-cachable, like (e.g. the tip of a branch);

  * the 'create' function of the mirror module no longer traverses
    dependencies since this was already handled by the 'mirror' command; 

  * Change handling of `--no-checksum`:

    * now that 'mirror create' uses stages, the mirror tests disable
      checksums when creating the mirror

    * remove `no_checksum` argument from library functions - this is now
      handled at the Spack-command-level (like for 'spack install')
2018-12-16 10:15:22 -08:00
Matthias Diener
9f528ccba0 env setup: support --help for cd/env commands (#10069) 2018-12-15 17:47:05 -08:00
Justin Stanley
87615d54cc r-multitaper: new package at 1.0-14 (#10110) 2018-12-15 20:08:33 +01:00
Massimiliano Culpo
61239257f9
Store ccache directory explicitly in Travis. (#10119)
* Store ccache directory explicitly in Travis.

Despite we started using ccache on `develop`, it seems the cache itself
is not stored from one CI build to the next. This might be du to the
fact that our language on Travis is Python and not C nor C++.

Hence here we store the ccache directory explicitly.
2018-12-15 17:53:51 +01:00
Justin Stanley
c973d761e9 r-popgenome: new package at 2.6.1 (#10108) 2018-12-15 08:44:20 -06:00
Justin Stanley
3b59bf9efa r-xnomial: new package at 1.0.4 (#10111)
* r-xnomial: new package at 1.0.4

* r-xnomial: add list_url
2018-12-15 08:43:08 -06:00
Adam J. Stewart
1424830378 spack pkg add: add help message (#10116) 2018-12-15 11:44:37 +01:00
Christoph Junghans
71a86bb840 .travis.yml: enable ccache (#6370) 2018-12-15 10:52:31 +01:00
Adam J. Stewart
caf94253e0
Add latest version of libsigcpp (#10103) 2018-12-14 21:09:33 -06:00
Adam J. Stewart
a55976747e
Add latest version of bdw-gc (#10100) 2018-12-14 21:09:19 -06:00
Adam J. Stewart
316df3cd37
Add latest version of libatomic-ops (#10099) 2018-12-14 21:09:04 -06:00
Levi Baber
7a0c334d81 pbsuite: pythonpath should be prepended not set (#10113) 2018-12-14 18:12:51 -08:00
Justin Stanley
6469f8953d clp: add explicit datadir (#10109) 2018-12-14 16:20:47 -06:00
Andrew Gaspar
e9281cc436 Updates to Google Test: (#10079)
- Add version 1.8.1
- Change to sha256 checksums
2018-12-14 13:23:08 -06:00
Michael Kuhn
f224f4a57e qt: fix openssl dependency for older versions (#10106) 2018-12-14 11:11:31 -06:00
Adam J. Stewart
34499c9b82
Add latest version of libxslt (#10098) 2018-12-14 10:47:23 -06:00
Adam J. Stewart
d7b4160e67
Add latest version of poppler (#10101) 2018-12-14 10:47:07 -06:00
Adam J. Stewart
bfdbadf2bb
Add latest version of cairo (#10102) 2018-12-14 10:46:52 -06:00
Massimiliano Culpo
020a01b18f Updated the Travis environment to xenial (#10090)
* Updated the Travis environment to xenial.
* Python 2.6 needs to remain on Trusty (can't be installed from Xenial)
2018-12-14 08:43:58 -08:00
Massimiliano Culpo
488e513e84 Turn on verbose output for MPICH builds in Travis (#10105)
Lately many CI runs for PRs are failing due to the `mpich` build that
times out on Travis (10 mins. without output). As the timeout seems to
happen consistently during the build phase, increasing the verbosity of
that test can help working around the issue.
2018-12-14 08:43:04 -08:00
Greg Becker
d2d0ab06b7 Fix spack package inheritance for module variables (#10097)
* we weren't properly setting module variables for the root package in a DAG -- just for transitive dependencies.
2018-12-14 08:37:22 -08:00
Adam J. Stewart
05f9c68c30
Add latest version of meson (#10104) 2018-12-14 09:10:55 -06:00
Elsa Gonsiorowski, PhD
76bfdd65fc make dtcmp an autotools spackage (#10095)
* make dtcmp an autotools spackage

* better code
2018-12-14 09:08:57 -06:00
Adam J. Stewart
3432a71430
Add new packages for ELSD and ELSDc (#10072) 2018-12-13 22:05:24 -06:00
Matthias Diener
289ad8f375 cmake: add version 3.13.2 (#10092) 2018-12-13 17:35:58 -06:00
Miles Perry
b7a2192f91 Feature/spm (#10053)
* extract spm12.ctf to get binaries and libraries

* flake8 edits

* flake8 edits

* spm: updates

* spm: previous version
2018-12-13 12:43:45 -06:00
Eric
7f60226662 trf: add version 4.07b and install fixes (#10093)
* trf: add version 4.07 and install fixes

* suggested fixes
2018-12-13 12:42:26 -06:00
Satish Balay
e87d394038
superlu-dist: update v6.1.0 checksum (#10078) 2018-12-13 09:05:47 -06:00
Jon Rood
5dd9a321a4 Add CUDA_HOME variable to cuda module file. (#10088) 2018-12-13 08:05:13 +01:00
Christoph Junghans
0b42cf4d96 lammps: add new stable version (#10086) 2018-12-12 11:08:59 -06:00
Denis Davydov
7d5058ebe4 boost: add 1.69.0 (#10083)
signals (v1) was removed in 1.69.0
2018-12-12 10:14:47 -06:00