Commit graph

13676 commits

Author SHA1 Message Date
darmac
3344bb0a96 add new package : alluxio (#14143) 2019-12-13 12:51:30 -06:00
Scott Wittenburg
2520806df2 docker: add file, adjust locale, and use python3 for ubuntu (#13508)
* docker: add missing module to ubuntu images
* docker: fix issue with missing locale
* docker: one package per line + rm python2 support
* docker: ubuntu image also needs 'file' for buildcache creation
2019-12-13 10:22:20 -08:00
Zack Galbreath
0f5724e908 Split out CDash options to a separate help document (#13704)
Prevent `spack help install` from getting too cluttered with CDash-specific documentation.
2019-12-13 10:15:22 -08:00
Peter Josef Scheibel
8c2305e867 Patch fetching: remove unnecessary argument 2019-12-13 08:38:50 +01:00
Peter Josef Scheibel
8199f22e7c Mirrors: skip attempts to fetch BundlePackages
BundlePackages use a noop fetch strategy. The mirror logic was assuming
that the fetcher had a resource to cach after performing a fetch. This adds
a special check to skip caching if the stage is associated with a
BundleFetchStrategy. Note that this should allow caching resources
associated with BundlePackages.
2019-12-13 08:38:50 +01:00
Peter Josef Scheibel
b62ba7609d Mirrors: avoid re-downloading patches
When updating a mirror, Spack was re-retrieving all patches (since the
fetch logic for patches is separate). This updates the patch logic to
allow the mirror logic to avoid this.
2019-12-13 08:38:50 +01:00
Peter Josef Scheibel
754dd6eb1f Mirrors: perform checksum of fetched sources
Since cache_mirror does the fetch itself, it also needs to do the
checksum itself if it wants to verify that the source stored in the
mirror is valid. Note that this isn't strictly required because fetching
(including from mirrors) always separately verifies the checksum.
2019-12-13 08:38:50 +01:00
Peter Josef Scheibel
b2cc50aa6a Mirrors: fix cosmetic symlink targets
The targets for the cosmetic paths in mirrrors were being calculated
incorrectly as of fb3a3ba: the symlinks used relative paths as targets,
and the relative path was computed relative to the wrong directory.
2019-12-13 08:38:50 +01:00
Peter Josef Scheibel
b64f458102 Allow repeated invocations of 'mirror create'
When creating a cosmetic symlink for a resource in a mirror, remove
it if it already exists. The symlink is removed in case the logic to
create the symlink has changed.
2019-12-13 08:38:50 +01:00
darmac
03203a86b4 fix libev url (#14066)
* fix libev url

* remove list_url in libev
2019-12-12 22:58:33 -06:00
Sinan
0d7b9de3be compile python with sqlite loadable extensions (#14132) 2019-12-12 22:58:16 -06:00
t-karatsu
ddfca1b2f2 cmake: Fix checksum of 4075.patch (#14125) 2019-12-12 13:57:23 -05:00
iarspider
d98b433a3c Fix py-jupyter-client version ranges (#14126) 2019-12-12 11:31:47 -06:00
Justin S
c2f45fb4da charmpp: fix build failing from broken hardlink (#13922)
* charmpp: fix build failing from broken hardlink

* charmpp: use setup_dependent_build_environment
2019-12-11 20:20:05 -06:00
Glenn Johnson
fec3a852c7 Fix replacement of embedded 'gcc' in augustus (#14116)
PR #13975 added makefile filtering to replace gcc/g++ with the spack
compiler. This conflicts with other filtering that is done in the package to
add paths for dependencies. The text of the dependency paths might
have 'gcc' in the path name, depending on the install_path_scheme, and
that was being replaced by the new compiler filters. That would mangle
the path to the dependecy resulting in a failed build.

This PR moves the compiler filters to be before the other filters to
make sure that the compiler is set before the dependency paths.
2019-12-11 20:19:27 -06:00
iarspider
695c09a8b7 Add missing dependency on setuptools to py-subprocess32 (#14074)
* Add missing dependency on setuptools to py-subprocess32

* Update package.py

* Update var/spack/repos/builtin/packages/py-subprocess32/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py
2019-12-11 20:18:39 -06:00
Brian Van Essen
53f73e280a Bugfix for bad hydrogen tags (#14119) 2019-12-11 20:17:10 -06:00
Adam J. Stewart
1f9d37c346
TensorFlow: must specify CUDA compute capabilities (#14118)
* TensorFlow: must specify CUDA compute capabilities

* Correctly restrict cuda_arch version ranges
2019-12-11 20:16:52 -06:00
Adam J. Stewart
7ec1917d9b
Add try-except for Python installation (#14122) 2019-12-11 20:16:33 -06:00
Adam J. Stewart
47615566ea
Fix JDK 8 download URLs (#14120) 2019-12-11 20:16:16 -06:00
iarspider
aac45154fd Fix py-ppft source extension (#14077)
* Fix py-ppft source extension

* PEP-8 fix

* Update package.py

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-11 14:05:14 -06:00
iarspider
d07e988fbc Fix py-pox build recipe (#14078)
* Fix py-pox build recipe

* PEP-8 fix

* Update package.py

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-11 14:04:50 -06:00
iarspider
a254f7011e Fix py-notebook for Python2 (#14079)
* Fix py-notebook for Python2

* PEP-8 fix

* Update package.py

* Update package.py

* Syntax fix

* Update var/spack/repos/builtin/packages/py-notebook/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-11 14:04:33 -06:00
iarspider
34adebc7cf Fix py-hypothesis (#14084)
* Fix py-hypothesis

* Update package.py

* Update package.py

* Update package.py
2019-12-11 14:04:18 -06:00
Dan Lipsa
6f7a58b142 Fix constexpr for llvm 9.0 (#14095) 2019-12-11 14:03:57 -06:00
Adam J. Stewart
69a91b5b6b
Add grass 7.8.2 (#14115) 2019-12-11 14:00:38 -06:00
Brian Van Essen
ee0b9bfa5b Added new versions of hydrogen (#14103) 2019-12-11 12:23:25 -06:00
Michael Kuhn
927f496306 doxygen: Fix libiconv checks (#14106)
PR #10589 introduced a libiconv dependency to doxygen. This causes
problems on Linux systems, since the iconv symbols are included in libc,
which causes CMake to use the external header but not the external
library. Work around this by always using the external libiconv.
2019-12-11 12:22:59 -06:00
Glenn Johnson
f2979da2af Build xed CLI for the intel-xed package (#14114)
The xed CLI is handy, and can be gotten by building the examples in the
intel-xed package. This PR builds the examples and installs the xed CLI.
It would also be possible to install more of the example binaries if
someone thinks they are useful.
2019-12-11 12:13:27 -06:00
Mark Olesen
77482e102a openfoam relocated to https://develop.openfoam.com/Development/openfoam.git (#14101) 2019-12-11 12:12:30 -06:00
noguchi-k
b0a7c8487d diamond: fix narrowing error. (#14064)
* diamond: fix narrowing error

* diamond: fix patch

* diamond: add link to the patch source
2019-12-11 12:07:21 -06:00
iarspider
d4326038b9 Fix py-pkgconfig recipe (#14081)
* Fix py-pkgconfig recipe

* Update package.py

* Proper fix for py-pkgconfig
2019-12-11 12:06:18 -06:00
iarspider
bb3bae4bae Fix py-pathos source file extension (#14080)
* Fix py-pathos source file extension

* PEP-8 fix

* Add version 0.2.3 to spack

* Update package.py
2019-12-11 12:04:45 -06:00
iarspider
ec3d979899 Fix py-llvmlite (#14083)
* Fix py-llvmlite

* Update package.py

* Add llvmlite 0.29

* Update package.py
2019-12-11 12:03:48 -06:00
iarspider
5c2afd0535 Fix py-dill source archive extension (#14085)
* Fix py-dill source archive extension

* Add py-dill 0.2.7, remove extra str()

* Update package.py

* Update package.py

* Update package.py
2019-12-11 12:03:28 -06:00
Howard Pritchard
e7a03d07b6 llvm: fix for building llvm using Cray PE (#12734)
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2019-12-11 11:51:44 -06:00
iarspider
3cd6ca02d2 Fix json-c package (#14087)
* Fix json-c package

* Fix PEP-8

* Update package.py

* Update package.py
2019-12-10 17:34:50 -06:00
iarspider
ec060f3d9c Fix libgeotiff dependency of gdal (#14089)
* Fix libgeotiff dependency of gdal

* Update package.py

* Fix typo

* Update package.py
2019-12-10 17:34:35 -06:00
Justin S
2c31776007 openmolcas: new package at 19.11 (#14099)
* openmolcas: new package at 19.11

* openmolcas: fill description

* openmolcas: rewrite using CMakePackage

* openmolcas: add py-six dep

* openmolcas: use setup_build_environment, setup_run_environment

* openmolcas: remove redundant cmake dep

* openmolcas: explicitly cast Executable to str
2019-12-10 17:33:52 -06:00
Greg Becker
917224cb3c pytest: add __init__ files for all test subdirs (#13889)
* pytest: add __init__ files for all test subdirs

* add licenses to empty files

* Fix Sphinx warning message about comment within docstring

* Further fixes to Sphinx docstring
2019-12-10 15:19:09 -06:00
iarspider
5b3b522861 Alternative locations for tclConfig and tkConfig (#14071)
* Alternative locations for tclConfig and tkConfig

* Fix PEP-8
2019-12-10 15:18:19 -06:00
Eric Berquist
33f603734d Update tmux to 3.0a (#14096)
* Add tmux@2.9 and tmux@3.0a

* Fix checksums
2019-12-10 15:06:21 -06:00
Massimiliano Culpo
59d222c172 Better error message when setting unknown variants during concretization (#13128)
fixes #13124
2019-12-10 11:21:45 -08:00
Christoph Junghans
34f0195de8 gromacs-2018.8: fix checksum (#14069) 2019-12-10 12:33:41 -06:00
iarspider
fb6d29adfa ROOT: +http variant doesn't require any external dependency (#14072) 2019-12-10 12:29:11 -06:00
iarspider
f96216cf40 Fix py-pyasn1 version for py-pyasn1-modules (#14076) 2019-12-10 12:26:16 -06:00
iarspider
122264609e Fix for DD4Hep build: can't find boost (#14091) 2019-12-10 11:58:52 -06:00
iarspider
dd67868ef6 More variants for cairo (#14092) 2019-12-10 11:58:37 -06:00
Simo Tuomisto
9e8204d075 openfoam-org: Adding openfoam-org versions 6 and 7. (#12859)
This commit adds openfoam-org versions 6 and 7. It also adding new variant for metis and fixes openfoam-org's old environment modification functions.
2019-12-10 09:42:01 -06:00
Mark W. Krentel
c627e5a6fc intel-tbb: fix and cleanup patch version ranges (#14053)
Recent commit e9ee9eaf (#13989) fixed testing version ranges inside
patch when clauses.  Previously, it was necessary to write all revs
individually for packages with multiple length version numbers (2019
and 2019.1).

This fixes the build for the old 2017.* versions.
2019-12-09 17:11:47 -06:00