* Added conflict in Trilinos for STK when building as shared on Darwin.
* Created shared variant for Nalu and Nalu-Wind to automatically build
Trilinos as static library on Darwin.
* Moved ECP tags from Nalu to Nalu-Wind (the latter is the official
ECP application).
* Remove py-setuptools dependency from py-spyder (fixes#9205)
* Add constraint on transitive qt dependency to build with webkit
extension (required for this package)
* Update pycodestyle dependency constraints
* reordered dependencies (py-zmq, py-chardet) to confirm to the
ordering in setup.py
* superlu-dist: Update package.py for superlu-dist v6.0.0 using CMake
* superlu_dist: Update the header of package.py
* Specify lapack_blas and DCMAKE_INSTALL_LIBDIR
disable support for superlu-dist before v5
current stable releases of PETSc and Trilinos have non-overlapping
requirements on Superlu-dist. For now turn it off by default in
Trilinos, which requires older versions.
* bison: Add missing build dependencies
bison also depends on cmp, which is currently not available in Spack.
* help2man: Add missing build dependency
* m4: Fix build with newer versions of glibc
* openssl: Add missing build dependency
openssl's configure script is actually a Perl script.
* texinfo: Add missing perl dependency
* diffutils: New package
* findutils: Fix build with newer versions of glibc
* mvapich2, mpich: Add missing findutils dependency
* Add option to disable threads for Geant4
* Add option to enable DagMC in MOAB
* Explicitly add OFF flag when threading is disabled
* Fix unintentional enabling of C++14 in Geant4
The following always evaluated to True:
'c++14' or 'c++1y' in spec:
* Push default flag handlers into module scope
* Preserve backwards compatibility of builtin flag handler names
Ensure Spack continues to work for packages using the `Package.env_flags` idiom and equivalent.
* update docs and tests to match
* Update packages to match new syntax
* xerces-c: Add variant for choice of transcoder (gnuiconv, iconv, icu,
macos, windows). It's important to specify a --enable-transcoder
option on the configure line or else xerces may make a different
choice when multiple transcoders are available.
* Pass the compile flags to configure. For cflags and cxxflags, this is
necessary to respect the value from the spack install line.
Otherwise, xerces (and any autotools package) will choose a default
value that overrides the spack compiler wrapper.
* Add xerces version 3.2.2.
* icu4c needs the --enable-rpath configure option on Darwin
* New package: tldd
* https://gitlab.com/miscripts/tldd
* Improvements
* make it prefetchable by specifying a hash based version
* specify the constraints on pstreams versions (from INSTALL)
* Improvements
* Make it a Makefile Package and only overwrite the install_targets
* Remove the URL as there's really no downloadable 'tar ball' version
* Initial commit for new package STRUMPACK, a linear solver library.
* Update to STRUMPACK version 3.0.3.
This adds a check for OpenMP task priority support (since OpenMP 4.5)
* treesub: new package starting at 0.2
* treesub: fix ant build, add exec script
* treesub: use portable octal format
* treesub: add license header
not sure how it even went missing.
The build process of Catalyst requires Python at build time (see line 86) even when the +python variant is not selected.
When the +python variant is selected, Python becomes required at build, link, and run time. There doesn't seem to be any restriction on the version of Python required when +python is not selected.
* Fix: bug in VTK package
Fix for issue 9423 (https://github.com/spack/spack/issues/9423): compilers other than clang don't have the `is_apple` property.
* VTK package: removing trailing whitespace
So flake8 stops complaining.
* Release 2.0 of the ECP Proxy Apps suite
* update laghos version
* make install dir structure consistent across all ecp-proxy-apps
* minor
* update macsio version
* patching p4est to select the proper openmp lib
* For when compiler.openmp_flag isn't supported
* authored by @nrichart, I only tested it
* Adding openmp variant
Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>
Building bazel yielded errors since commit cd9691d. The first commit
fixes the build for older bazel versions, the second commit adds new
versions and ports the patches to these versions.
* petsc: add new versions 3.9.4 and 3.10.0
* petsc:update superlu_dist dependency for version 3.10 [might have to change this later for xsdk]
* slepc: add in new releases 3.9.2 and 3.10.0
* Catch2: 2.3.0+
Add the latest two releases of Catch2.
In 2.3.0+, the include changed to a future-proof
`<catch2/catch.hpp>` path which dependent projects will break upon.
* openPMD-api: Catch2 2.3.0+
openPMD-api just updated to use the new, future-proof Catch2
headers `<catch2/catch.hpp>`.
Adds 'code' to the list of suffixes that are excluded from version
parsing of URLs, such that if a URL contains the string
'cistem-1.0.0-beta-source-code', a version X will substitute in to
produce a URL with cistem-X-source-code ('source' was already excluded).
The 'cistem' package version is updated to make use of this (and fix
a fetching bug with the cistem package). A unit test is added to check
this parsing case.
Turns out that there was a configury problem in libhio
which caused issues building the package on non-cray
systems, aka when using mpicc and friends.
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
This commit adds a patch that prevents the package from hanging. The package would hang because CMakeLists would look for a system MPI. This patch changes the behavior.
* add version 1.3.0
* change build parameters, install process
* mxnet will not compile against spack's nnvm and dmlc so we must use
the distributions provided by the source package.
* also removed 'bin' installation as mxnet is just a shared library.
* improve BLAS linking
* remove unnecessary args
* added variant for python bindings
* r-nloptr: Explicit depends_on(nlopt). Previously there was a hidden dependency, masked by the package's configure script.
* r-nloptr: Change spelling of variables to satisfy pyflake8
* r-nloptr: Break a long line to satisfy pyflake8
* r-nloptr: larger indent on continuation, to satisfy pyflake8
* r-nloptr: another attempt at larger indent on continuation, to satisfy pyflake8
* r-nloptr: now a smaller indent on continuation, to satisfy pyflake8
* r-nloptr: Another attempt at right amount of indent.
* r-nloptr: Another attempt at right amount of indent.
* Use the correct attributes for finding the nlopt includes and libs.
* Lines too long, split into pieces
This patch does not apply cleanly anymore and breaks clang/Mac builds
balay@asterix /home/balay/git-repo/github/trilinos (develop=)
$ patch -Np1 < /home/balay/git-repo/github/spack/var/spack/repos/builtin/packages/trilinos/xlf_tpetra.patch
can't find file to patch at input line 3
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- a/packages/tpetra/core/src/Tpetra_Details_libGemm.cpp
|+++ b/packages/tpetra/core/src/Tpetra_Details_libGemm.cpp
--------------------------
File to patch:
* Added jdk version, added r-ks and r-multicool packages, made some r packages less conservative in their r version requirement
* flake8 fixes
* fix formatting in jdk version cmd
* Added type=('build', 'run') to some R package dependencies,
added some missing dependencies to r-ks. Thanks Adam.
* fix flake8 error
Due to an internal bug regarding the handling of scalars
(ndim must be 0) in numpy prior to 1.15.0, openPMD-api
will require the latest numpy 1.15+.
Since there is a small regression with datetime pickling in
1.15.0 from the required fix and spack only packages 1.15.1
currently, we depend on 1.15.1 in the recipe.
* add 5 most recent versions and git master branch
* add trilinos, gmodel, throw, examples, optimize, symbols,
and warnings variants
* disable XSDK so that Trilinos dependencies are found.
* added py-pycogent
* flake8 edits
* added type=('build', 'run') to deps, changed py-matplotlib and mpi4py
* changed python min version to 2.6
* fixed cython to py-cython dep
* fixed mpi4py to py-mpi4py
* fixed py-sqlalchemy
* added 1.5.3 version
* fixed version 1.5.3 install
* changed deps names to reflect convention
* added variants
* changed download URL and added SHA256 hash
* fixed deps
* added github url for 1.5.3
* removed unneeded deps
* doesn't require py-setuptools
* fixed url and added py-setuptools specific to version 1.9
* fixed variant names and changed cython to normal dependency instead of variant
* removed cython dep, failed to build when it was present. Changed variant name 'mpi4py' to 'mpi' and changed sqlalchemy variant name to mpi
* fixed dependencies and added py-pymysql dep
* added setup-environment step
* changed download url for 1.5.3 to pypi
* fixed flake8 issue
* updated
* added changes
* Addition of latest maestrowf releases.
* Addition of filelock to dependencies.
* Addition of when clause to depends_on for filelock and tabulate.
* Correction of the tar url.
Update the version numbers and now depend on
the develop version of dyninst because of a
feature in openspeedshop depends on new code
in the dyninst develop tree. Without dyninst
develop, openspeedshop will not build.
* py-matplotlib: Add patch to fix FreeType library detection
Adds patch to add $CPATH to locations searched for FreeType header file
Patch has been upstreamed:
https://github.com/matplotlib/matplotlib/pull/11457
* py-matplotlib: Add patch to fix FreeType library detection
* Make patch only apply to versin 2.2.2 (as already upstreamed)
* Fix flake8 format issue
* py-matplotlib: add range to freetype patch
* py-matplotlib: whitespace
1. I presently get errors of the sort
==> Error: KeyError: 'No spec with name mpi in silo@4.10.2%gcc@8.1.0+fortran+mpi
[...]
$HOME/spack/var/spack/repos/builtin/packages/silo/package.py:84, in configure_args:
81 'FCFLAGS={0}'.format(self.compiler.pic_flag)]
82
83 if '+mpi' in self.spec:
>> 84 config_args.append('CC=%s' % self.spec['mpi'].mpicc)
85 config_args.append('CXX=%s' % self.spec['mpi'].mpicxx)
86 config_args.append('FC=%s' % self.spec['mpi'].mpifc)
without the extra explicit MPI dependency.
2. Silo uses zlib, so we should explicitly depend on it.
Added SUNDIALS 3.1.2 and 4.0.0-dev.1 versions and relevant dependencies
(3.1.2 requires CMake 2.8.12). Updated all versions to use sha256 hashes.
Addressed issue specific to clang compiler on macOS.
* Addition of py-filelock and first page of versions.
* Addition of setup.py patch for setuptools.
* flake8 failure fixes.
* Reduced url declaration to a single line.
* Correction to py-filelock to use distutils.
