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Author SHA1 Message Date
citibeth
459aab628d Added documentation for installing Environment Modules with Spack. 2016-04-01 16:00:58 -04:00
Peter Scheibel
9eb314fcaa merge from develop 2016-03-31 12:56:34 -07:00
Todd Gamblin
220c72d67f Merge branch 'features/blas-lapack-hardening' into develop 2016-03-31 11:37:09 -07:00
Todd Gamblin
a670408617 Quick fix for pkg diff. 2016-03-31 11:34:27 -07:00
Tom Scogland
5d2151ed64 reworked to deal with stage.path as property 
This version actually pulls the path through the package to deliver it
to each stage on creation when passed through the command.  This is
necessary due to the new StageComposite class that makes setting the
path directly on the stage impractical, it also takes the logic out of
package for the most part, which seems like an improvement.
 2016-03-31 10:20:55 -07:00
Tom Scogland
63f824b218 add a path argument to the stage command 
Allow users to use spack to stage a, potentially complex, package into a
given path.  This is nice for packages with multiple resources that must
be placed, for example LLVM with all sub-projects.
 2016-03-31 09:56:26 -07:00
Massimiliano Culpo
4f6320a7eb uninstall : added unit tests 2016-03-31 13:22:48 +02:00
Massimiliano Culpo
dd1c667d8d uninstall : changed error message 2016-03-30 16:10:20 +02:00
Peter Scheibel
a0c42a3fd1 removed stale TODO 2016-03-29 18:58:18 -07:00
Peter Scheibel
c40559433b added docstring 2016-03-29 18:54:24 -07:00
Peter Scheibel
03d907e1e5 in the case of multiple digests, avoid creating different mirror filenames from run to run (as long as the available digests do not change) 2016-03-29 18:48:25 -07:00
Peter Scheibel
ce4de6227e (1) access package via spec property (2) use any digest to form archive filename 2016-03-29 18:45:58 -07:00
Peter Scheibel
bee224c567 mirror archive filename now includes the digest type as well as the digest 2016-03-29 18:25:22 -07:00
Gregory Becker
7e9baf9e25 Made architecture test robust for more architectures 2016-03-29 11:23:36 -07:00
Massimiliano Culpo
653d7c5257 uninstall : minor fixes 2016-03-29 17:28:46 +02:00
Todd Gamblin
a05bea7de5 Merge pull request #681 from LLNL/bugfix/complete-restage 
Fix bug in restage
 2016-03-29 05:11:21 -07:00
Todd Gamblin
dfc5cf288c Fix bug in restage 
- Restage previously only removed the source directory from the stage.
- Now removes any other directories in stage as well.
 2016-03-29 04:35:41 -07:00
Todd Gamblin
e1fdd4341b Merge branch 'eschnett-correct-cc' into develop 2016-03-29 04:16:18 -07:00
Todd Gamblin
f80e839ff4 Handle Darwin's ld -r option properly 
- ld -r doesn't work with RPATH on OS X.

- for GNU ld, the -r option only means 'relocatable',
  and doesn't affect RPATH.

- This adds special handling to omit RPATHs for ld -r on OS X
 2016-03-29 03:14:39 -07:00
Todd Gamblin
a14527ec06 Add command to compiler input log. 2016-03-28 15:34:25 -07:00
Massimiliano Culpo
1141f11955 uninstall : added user confirmation 2016-03-29 00:28:02 +02:00
Todd Gamblin
d8579a5b80 Simplify cc: Remove old logic and add better tests. 
- removed a lot of old logic that was only still needed for tests.

- Added better unit tests for dependency RPATH, -L, and -I args

- tests now check whether the compiler omits -I args in link mode.
 2016-03-28 04:11:54 -07:00
Todd Gamblin
f3dd889d44 Fix bug with lib64 RPATH setting in cc. 2016-03-28 03:51:05 -07:00
Todd Gamblin
eb397b5693 Merge pull request #669 from glennpj/module_format 
Wrap the long description of an environment module so it is more readable
 2016-03-27 17:30:07 -07:00
Todd Gamblin
8b45d6f84f Merge pull request #658 from davydden/metis_parmetis_darwin 
metis/parmetis/oce/boost: correct install_name on Darwin via a global tool
 2016-03-27 16:10:05 -07:00
Denis Davydov
7eca1284c8 metis/parmetis/boost/oce/scalapack: correct install_name on Darwin via a global function. 2016-03-28 00:22:25 +02:00
Massimiliano Culpo
e0f463c4f9 uninstall : added recursive option 2016-03-27 23:56:41 +02:00
Glenn Johnson
5695e4c03d Wrap the long description of an environment module so it is more readable. 2016-03-27 15:42:20 -05:00
Todd Gamblin
ec107b290f Merge branch 'correct-cc' of git://github.com/eschnett/spack into eschnett-correct-cc 2016-03-27 13:38:06 -07:00
Todd Gamblin
e049fc2840 Run post-install hoooks before build stage is removed. 
- Build will properly fail when post-install hoooks fail.

- Post-install hooks have a proper working directory set now.
 2016-03-27 11:47:20 -07:00
Todd Gamblin
cde3320582 Add a method to find the containing directory of a library. 2016-03-27 11:32:42 -07:00
Todd Gamblin
dce590fb21 Add a dso_suffix variable to build_environment 
- Consolidate this in one place so that we don't have to do it in every build.

- Will update further once better OS support is committed.  Shoudl
  really be an attribute of the forthcoming `Platform` class.
 2016-03-27 11:32:42 -07:00
Todd Gamblin
b0b882cbb3 Speed up directives by skipping debug info in stack traversal. 
- `caller_locals()` doesn't need debug info, only frame locals.
- `get_calling_module()` doesn't either.

- Changed calls to `inspect.stack()` -> `inspect.stack(0)`
 2016-03-27 11:30:09 -07:00
citibeth
4a6b5d5247 Update to documentation formatting. 2016-03-27 00:14:10 -04:00
citibeth
a1c965d70d Fixed imports to make `git spconfig` work after recent merge from develop. 2016-03-26 20:40:22 -04:00
Peter Scheibel
06c98320a8 handle case where file contents change but resource name does not (e.g. if resource maintainer uses same name for each new version of a package) 2016-03-25 18:38:26 -07:00
Gregory Becker
57ced37229 Fixed a bug in the testing 2016-03-25 17:03:49 -07:00
Gregory Becker
618a9b2d7b Fixed bug in platform names that I introduced yesterday 2016-03-25 15:41:22 -07:00
Elizabeth F
9889b1a5fe Added documentation for StagedPackage, etc. 2016-03-25 17:15:15 -04:00
Elizabeth F
8f675b0ee8 Made StagedPackage user-visible. 2016-03-25 17:15:06 -04:00
citibeth
358b387283 Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage 2016-03-25 17:14:35 -04:00
citibeth
8019748396 Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage 
# Conflicts:
#	lib/spack/spack/package.py
 2016-03-25 15:36:54 -04:00
Peter Scheibel
bd5abb2922 spacing issue 2016-03-24 19:48:15 -07:00
Peter Scheibel
6423eab917 implemented cache_local method for DIY stage (as a noop) 2016-03-24 19:45:10 -07:00
Peter Scheibel
142d1f5cbc stage creates cache fetcher with cache object (so it can be mocked for tests) 2016-03-24 19:28:21 -07:00
Gregory Becker
315623d361 Fixed things from merge. 2016-03-24 16:55:46 -07:00
Adam J. Stewart
9985816642 Fix spack info indentation 2016-03-24 14:49:41 -05:00
Peter Scheibel
fe71ba992d remove unused import 2016-03-24 12:16:50 -07:00
Peter Scheibel
13bf7d4ff1 (1) move definition of MockCache to test command (no definitions or extra work is required in MockPackagesTest) (2) removing outdated logic (which originated in this branch) and minor cleanup 2016-03-24 12:02:39 -07:00
alalazo
758a9c9096 python extensions : create PYTHONPATH in module files 2016-03-24 10:57:46 +01:00
alalazo
f095e619b9 module files configuration : enable/disable logic is now positive 2016-03-24 09:31:28 +01:00
Peter Scheibel
dbfa6c925e replace references to cache directory with references to new cache object. tests may assign a mock cache but by default it is None (this will avoid any implicit caching behavior confusing unit tests) 2016-03-23 20:18:58 -07:00
Peter Scheibel
ed0f6f75a7 clear test cache before and after each MockPackagesTest (I think Ive got a better way to avoid test fragility but Ill add this for now) 2016-03-23 19:49:28 -07:00
Gregory Becker
688eca23ff cleanup 2016-03-23 09:54:57 -07:00
alalazo
d93f2b335d modules : fixed annoying indent 2016-03-23 16:04:36 +01:00
alalazo
0fbdb3f65d modules : added configuration file with disable keyword 2016-03-23 15:54:26 +01:00
Todd Gamblin
38350ae33d resurrect preferred=True option for packages lost in merge of externals support. 
- Pyton 2.7.11 is preferred again.
 2016-03-23 01:32:54 -07:00
Todd Gamblin
c4134ee71e Fix #608: broken numpy build. 
- Failed to catch all instances of modify_module when it was renamed
  to setup_dependent_package.

- Refactored remaining modify_module calls.

- Also modified Python's setup_dependent_package slightly: only
  creates empty site-packages directory for Python extensions now, not
  for all dependents.
 2016-03-23 00:36:32 -07:00
Peter Scheibel
cb9fba98d8 (1) relocate cache for tests (2) initial approach for restoring unit tests (just for git tests although the same concept applies to the other unit tests which are failing - namely those for svn and hg) 2016-03-22 19:37:47 -07:00
Gregory Becker
7c729d4c3c Merged newarch into merge 2016-03-22 15:22:51 -07:00
Peter Scheibel
75460d8586 URLFetchStrategy.archive does a copy vs. a move now 2016-03-22 10:43:43 -07:00
Todd Gamblin
a26992ef55 Change from PR #552: rename setup_dependent_python_module -> setup_dependent_package 
- Fixed in package.py
- Fixed wrong prototypes in packages that use it.
- Fixed build_environment to set module variables properly
  - added hacky fix to ensure spec/package consistency in build processes.
  - Need to think about defensive spec copy done by `Repo.get`.  May be
    time to think about an immutable spec implementation.
 2016-03-22 01:56:16 -07:00
Peter Scheibel
41a97c8f80 temporarily wrap archiving with conditional to avoid moving (this still causes a failure on the initial download) 2016-03-21 20:55:23 -07:00
Peter Scheibel
b255f02762 undoing whitespace-only diff 2016-03-21 20:50:26 -07:00
Peter Scheibel
ee5e507ff6 pursuing a strategy using fetch.archive and treating var/spack/cache as a mirror. this should support both URLFetchStrategy as well as VCSFetchStrategy (the previous strategy supported only the former). this won't work until URLFetchStrategy.archive is updated 2016-03-21 20:48:12 -07:00
Todd Gamblin
b1516f64eb Rename some environment methods to be less repetitive, add set_path. 2016-03-21 16:01:40 -07:00
Todd Gamblin
439d47b4e4 Refactor environment setup. 
- Gave setup_environment and setup_dependent_environment more similar
  signatures. They now allows editing the Spack env and the runtime
  env for *this* package and dependents, respectively.

- modify_module renamed to setup_dependent_python_module for symmetry
  with setup_dependent_environment and to avoid confusion with
  environment modules.

- removed need for patching Package objects at runtime.

- adjust packages to reflect these changes.
 2016-03-21 16:01:35 -07:00
Todd Gamblin
e88df95b42 Remove unused code from modules.py 2016-03-21 16:01:26 -07:00
Todd Gamblin
48b35bb495 Fix print function in uninstall.py 2016-03-21 16:00:50 -07:00
Todd Gamblin
861a235ecb Merge pull request #552 from epfl-scitas/features/env_objects_flying_around 
enhancement proposal : customization of module files
 2016-03-21 15:56:20 -07:00
Matthew LeGendre
5d06daeb5e Add test for issue 573, child with compiler not respected in concretization 2016-03-21 14:28:34 -07:00
Matthew LeGendre
b79fce76cb Fix issue 573 where Spack was ignoring user's compiler preference in concretization 2016-03-21 14:28:07 -07:00
alalazo
fbeffee91e Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 
Conflicts:
	lib/spack/spack/package.py
	var/spack/repos/builtin/packages/netlib-scalapack/package.py
 2016-03-21 09:46:49 +01:00
alalazo
aef6d50b08 uninstall : fixed typo (print statement vs. print function) 2016-03-21 09:23:25 +01:00
Peter Scheibel
d632266a40 move cache to var/spack/cache 2016-03-18 17:15:45 -07:00
Peter Scheibel
fd067dd8b8 since only archives with checksums can be retrieved from the cache, make sure that an archive without a checksum isnt placed there (this wouldn't cause an error but does waste space and might be confusing) 2016-03-18 17:00:13 -07:00
Peter Scheibel
ac7323118e rename for clarity 2016-03-18 16:34:45 -07:00
Peter Scheibel
16fa40b893 (1) add a var/cache directory under spack. (2) downloads from URLFetchStrategy check the cache and skip the download if the source is available there. 2016-03-18 15:50:24 -07:00
Todd Gamblin
e9126baaab Add docs for InstallError. 2016-03-18 13:42:45 -07:00
Todd Gamblin
23f3f1adfe Make InstallError and ExternalPackageError visiible in packages. 2016-03-18 13:32:37 -07:00
Todd Gamblin
741bea032c Merge pull request #574 from LLNL/features/flattener 
Created flatten_dependencies function
 2016-03-18 12:13:48 -07:00
Gregory Becker
151b04637e changed function name and removed hardcoded libs dir 2016-03-18 11:55:31 -07:00
Gregory Becker
af7e3cadde cleanup 2016-03-18 11:34:07 -07:00
Gregory Becker
76672a4e34 Refactoring flat_install 2016-03-18 11:28:44 -07:00
Todd Gamblin
4e9ba49272 Merge pull request #576 from adamjstewart/features/tar 
Add support for .tar files
 2016-03-18 11:13:17 -07:00
Adam J. Stewart
6acb830263 Add support for .tar files 2016-03-18 13:03:55 -05:00
Gregory Becker
80495e50f9 added error class for error that should never come up 2016-03-18 09:46:18 -07:00
Gregory Becker
1fa38689d8 Created flatten_dependencies function that dummy packages can use to create sane install environments. 2016-03-18 09:35:56 -07:00
alalazo
491babd5cd env modifications : added a validation rule 2016-03-18 17:09:20 +01:00
alalazo
1e468c5541 modules : added formats mapping 2016-03-18 16:02:44 +01:00
alalazo
ccd90df62f modules : turned category into a property (logic can be extended later) 2016-03-18 15:41:14 +01:00
alalazo
67ca2c704b modules : fixed bug in modify_module arguments 2016-03-18 15:18:26 +01:00
alalazo
ec8cc2b528 PYTHONPATH : python patches methods for its extensions 2016-03-18 14:40:53 +01:00
Ben Morgan
076cc764a7 Add additional suffixes for GCC compiler 2016-03-18 11:26:22 +00:00
alalazo
f9438c75d0 Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 2016-03-18 10:26:34 +01:00
Erik Schnetter
f3ea0420f8 Import recent changes 2016-03-17 21:53:13 -04:00
Erik Schnetter
84b7cd593f Merge branch 'develop' into correct-cc 
# Conflicts:
#	lib/spack/env/cc
 2016-03-17 21:52:24 -04:00
Todd Gamblin
90268876f7 Change sanity_check_[file|dir] to sanity_check_is_[file|dir], per #554 
- Add documentation as well.
 2016-03-17 18:49:58 -07:00
alalazo
ac394718ec python : implemented possible solution 2016-03-17 18:22:07 +01:00
alalazo
e673127263 package : added documentation 2016-03-17 18:11:23 +01:00
alalazo
38c3c84969 environment : added caller information 2016-03-17 17:37:33 +01:00
alalazo
3da4d6664b environment : simplified hierarchy according to comments in review 2016-03-17 15:38:08 +01:00
alalazo
f0f0663d1b package : split environment_modifications into setup_environment and setup_dependent_environment. 
package : renamed `module_modifications` to `modify_module` for consistency
 2016-03-17 15:11:39 +01:00
alalazo
9cdd79e33f modules : restored previous logic for path inspection 2016-03-17 14:14:18 +01:00
Adam J. Stewart
bb04d5cc63 Fix grammar in mirrors documentation 2016-03-16 14:27:22 -05:00
alalazo
ac762e95a6 modules : removed dead code 2016-03-16 16:23:02 +01:00
alalazo
597727f8be tclmodules : added hooks to process EnvironmentModifications objects 2016-03-16 15:19:13 +01:00
alalazo
b45ec3f04e environment : simplified modification of the environment 2016-03-16 10:55:28 +01:00
alalazo
b2c98feea4 Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 2016-03-16 09:02:35 +01:00
Todd Gamblin
7eca383b10 Add sanity check paths to packages; fix #505 2016-03-15 17:16:04 -07:00
Matthew LeGendre
108ea1522a Merge pull request #549 from LLNL/bugfix/gh538-less-greedy-concretize 
Bugfix/gh538 less greedy concretize
 2016-03-15 16:18:54 -07:00
Todd Gamblin
15bbd088e6 Fix #551: version bug in spack create 
- `spack create` now sets a proper version in generated file, based on
  the filename, even if it can't find any tarballs for the package.
 2016-03-15 14:38:06 -07:00
alalazo
c8cc6f4fc1 test : fix for python 2.6 2016-03-15 16:59:29 +01:00
alalazo
ccced9f290 package : optimized imports 2016-03-15 15:12:39 +01:00
alalazo
cc3d9f4eb7 environment : added test, modified docs 2016-03-15 15:09:35 +01:00
alalazo
572cb93bf8 package : renamed setup_dependent_environment to module_modifications 2016-03-15 14:05:30 +01:00
alalazo
c85888eb57 package : added environment_modifications 2016-03-15 13:36:41 +01:00
alalazo
bcea1df01c environment : refactoreded set_build_environment_variables 2016-03-15 10:49:33 +01:00
alalazo
f20247ae55 environment : refactoreded set_compiler_environment_variables 2016-03-15 10:08:54 +01:00
alalazo
f9923452b3 environment : added machinery to collect modifications to the environment and apply them later 2016-03-14 14:35:48 +01:00
Todd Gamblin
f2761270f3 Make concretization less greedy: add backtracking for virtuals. 
- `_expand_virtual_packages` now gets a candidate list and will try
  all the candidates.

  - Good news: If the first virtual in the list conflicts with something else in
               the spec, we'll keep trying until we find a good one.

  - Bad news: Only looks as far as the next normalize(); can't see
              conflicts further ahead than that if they're inevitable
              some other virtual expansion.

- Refactor `concretize.py` to keep all the nasty spec graph stitching in
  `spec.py`. This is more similar to before externals support.

  - `concretize.py` now just returns a list of candidates sorted by
    ABI compatibility to `_expand_virtual_packages`, and `spec.py`
    handles testing the candidates.

- Refactor the way external paths are handled in `config.py` and `concretize.py`:

  - previously, `spec_externals` returned spec/path pairs.  Now it
    returns specs with `external` set. Makes code in `concretize.py`
    more natural.
 2016-03-14 05:04:01 -07:00
Todd Gamblin
f45b8b1083 Add some tests for packages with multiple virtual dependencies. 
- Added mock `hypre` package, depends on `lapack` and `blas`.

- test cases where some packages provide both `lapack` and `blas`, but
  others do not.
 2016-03-14 05:02:50 -07:00
Todd Gamblin
05c761dee9 Add package_class method to spec. 
- Shouldn't call .package from within things like normalize() and
  concretize() beacuse spec may be inconsistent.

- Add `.package_class` property so that we can get at package metadata
  without constructing a Package with a Spec.

- should be faster than `.package` was, anyway. Use where possible.
 2016-03-14 04:59:29 -07:00
Todd Gamblin
003fd4d834 Optimize __eq__ and __ne__ in key_ordering 
- use `is` when possible before calling `_cmp_key()`
 2016-03-14 04:55:30 -07:00
Elizabeth F
5c865b9b70 Fixed typo in typo fix. 2016-03-13 19:44:04 -04:00
Elizabeth F
6f26c45143 Fixed typo bug. Made error comment more explicit 2016-03-13 19:41:09 -04:00
Elizabeth F
3383486adc Fixed typo bug. Made error comment more explicit 2016-03-13 19:39:45 -04:00
Elizabeth F
0426796d9f Fixed typo 2016-03-13 18:14:38 -04:00
Elizabeth F
030e8dd1ac Removed Python 2.7-style string formatting 2016-03-13 18:04:23 -04:00
Elizabeth F
4c9a52044a Fixed CMakePackage import 2016-03-13 15:18:24 -04:00
citibeth
857f791286 Add missing import. 2016-03-13 00:40:50 -05:00
citibeth
9885f1a19e Fix for Python 2.6 2016-03-13 00:34:46 -05:00
Elizabeth F
c1a8574d8f Fixed for Python 2.6 2016-03-13 00:29:40 -05:00
citibeth
4236157823 (1) Added "spack spconfig" command. 
(2) Neatened up the spconfig.py auto-generated file.
 2016-03-13 00:13:00 -05:00
Elizabeth F
90bb855ffa A new subclass StagedPackage(Package) is introduced. This PR should 
not change the behavior for existing packages that subclass from
spack.Package.

If a package subclasses spack.StagedPackage instead of spack.Package,
the install() phase (run inside a forked process) is now separated
into sub-stages:

    a) spconfig: Generate a script spconfig.py that will configure the
       package (eg by running CMake or ./configure) This is for use if
       the user wishes to build externally from Spack.  Therefore, the
       Spack compiler wrappers are NOT used here.  Currently, that
       means that RPATH support is up to the user.

    b) configure: Configure the project (eg: runs configure, CMake,
       etc).  This will configure it for use within Spack, using the
       Spack wrapper.

    c) build: eg: "make"

    d) install: eg: "install"

If one chooses to use StagedPackage instead of Package, then one must
implement each of the install sub-stages as a separate method.
StagedPackage.install() then calls each of the sub-stages as
appropriate.

StagedPackage can be configured to only run certain sub-stages.  This
is done by setting the optional kwarg install_phases when calling
do_install().  Setting install_phases() ONLY has an effect on
StagedPackage, not on any existing packages.  By default,
install_phases is set to make StagedPackage run the same stages that
are normally run for any package: configure, build, install (and NOT
spconfig).

The ability for Spack to run stages selectively for StagedPackage
instances will enable new functionality.  For example, explicit
CMake/Autotools helpers that allow Spack to help configure a user's
project without fetching, building or installing it.

-------------

One implementation of StagedPackage is provided, CMakePackage.  This
has the following advantage for CMake-based projects over using the
standard Package class:

  a) By separating out the phases, it enables future new functionality
     for packages that use it.

  b) It provides an implementation of intall_spconfig(), which will
     help users configure their CMake-based projects.

CMakePackage expects users to implement configure_args() and
configure_env().  These methods provide the package-specific arguments
and environment needed to properly configure the package.  They are
placed in separated functions because they are used in both the
spconfig and configure stages.

TODO:

1. Generate spconfig.py scripts that are more readable.  This allows
   the users to understand how their project is configured.

2. Provide a practical way for the user to ACCESS the spconfig stage
   without building the project through Spack.

3. The CMAKE_TRANSITIVE_INCLUDE_PATH stuff needs to be reworked; it
   should be considered provisional for now.

4. User of Autotools might wish to make a similar ConfigurePackage
   subclass of StagedPackage.

---------------

One package using CMakePackage is introduced.  See ibmisc/package.py.
 2016-03-11 23:30:38 -05:00
becker33
3060f27909 Merge pull request #536 from adamjstewart/fixes/doc_typos 
Documentation typo fixes
 2016-03-11 10:53:57 -08:00
Adam J. Stewart
bae03404f4 Documentation typo fixes 2016-03-11 12:51:45 -06:00
Matthew LeGendre
1c7f754e5b Invert and rename the nobuild option in package.yaml configs to buildable. 2016-03-11 10:04:08 -08:00
alalazo
1d70b590fc build_environment : fixed minor spelling errors and a few style issues 2016-03-11 13:20:57 +01:00
Todd Gamblin
f40c78a064 Merge pull request #532 from mplegendre/bugfix/ordering_satisfies 
Fix issue with preferred satisfies not being respected
 2016-03-10 21:50:40 -08:00
Matthew LeGendre
ac88cab68f Fix issue with preferred satisfies not being respected 2016-03-10 17:00:27 -08:00
Todd Gamblin
30df1c838d Merge pull request #531 from mplegendre/bugfix/github-530 
Fix type error that was causing mis-ordering of compiler versions
 2016-03-10 16:31:52 -08:00
Matthew LeGendre
4693af0736 Fix type error that was causing mis-ordering of compiler versions 2016-03-10 16:23:35 -08:00
Todd Gamblin
2bbf42b49d Indentation change. 2016-03-10 16:18:11 -08:00
Todd Gamblin
670024cf77 Merge branch 'mplegendre-features/external-packages' into develop 2016-03-10 10:07:08 -08:00
alalazo
30adc4c9b8 cc : handle spaces in folders? 2016-03-10 14:59:31 +01:00
alalazo
78ef0618bc cc : converted indents to spaces 2016-03-10 14:35:09 +01:00
Massimiliano Culpo
7ae6c62ddb Fixed shell quoting error 2016-03-10 14:08:43 +01:00
Massimiliano Culpo
835b47c196 Merge branch 'develop' of https://github.com/LLNL/spack into fixes/intel_openmpi 2016-03-10 13:18:03 +01:00
Todd Gamblin
c4fddcc6e9 Add 'provders' back into packages.yaml schema 2016-03-10 03:15:49 -08:00
Todd Gamblin
b637f75164 Merge branch 'mplegendre-features/external-packages' into develop 2016-03-10 02:04:44 -08:00
Todd Gamblin
82b7067fdf Refactored external packages slightly. 
- Move `Spec.__cmp__` out of spec, into concretize as `cmp_specs`.
  - `Spec.__cmp__` was never called (except explicitly) due to rich
    comparison operators from `key_ordering`

- Refactor `_find_other_spec` to free function `find_spec`. Add a test
  for it to make sure it works.
 2016-03-10 01:29:55 -08:00
Todd Gamblin
1fe196f95c whitespace and formatting 2016-03-10 01:29:55 -08:00
Todd Gamblin
048c406f49 Remove vestigial variants in directory name. 2016-03-10 01:29:54 -08:00
Todd Gamblin
b0572a5462 Minor tweaks to abi code. 2016-03-10 01:29:54 -08:00
Todd Gamblin
0244d794cd remove unnecessary import 2016-03-10 01:29:54 -08:00
Todd Gamblin
b0377da771 update mirror config documentation. 
- mirrors.yaml uses Spack's OrderedDict rather than lists.
 2016-03-10 01:29:53 -08:00
Todd Gamblin
52cdcdde76 Fix #525: sbang handles symlinks & directories properly. 2016-03-09 17:15:10 -08:00
Todd Gamblin
f56939c16c Add unit test for sbang patching. 2016-03-09 17:13:41 -08:00
Matthew LeGendre
dd0ae255ad Merge branch 'features/external-packages' of github.com:mplegendre/spack into features/external-packages 
Conflicts:
	lib/spack/docs/site_configuration.rst
 2016-03-09 16:18:37 -08:00
Matthew LeGendre
1f06dd40f7 Update documentation for new packages.yaml config format. 2016-03-09 16:11:53 -08:00
Matthew LeGendre
a384ad5b12 Fix problem with pure integer arguments in preferred versions list (e.g, 2 instead of 2.7.3) 2016-03-09 16:11:33 -08:00
Todd Gamblin
ca10229565 Fixes #524 
- Had attempted to add more functionality by assigning different
  meanign None, True, and False values "keep_stage" (where False was
  "always delete").

- Turns out that's not really worth the complexity.  Having the third
  "always delete" sense is hardly ever useful but makes the code hard
  to understand.
 2016-03-09 14:56:21 -08:00
Matthew LeGendre
87db69478d Merge branch 'develop' into features/external-packages 
Conflicts:
	lib/spack/spack/package.py
 2016-03-09 11:09:37 -08:00
Luigi Calori
bf4d51ea0b fix error exit when doing spack patch without parameters, same as spack stage 2016-03-09 09:27:53 -08:00
Todd Gamblin
9c61843737 Fix bugs in DIYStage: fetch & context handling. 
- DIYStage needs to be a context handler
- DIYStage.fetch needs to take 2 args.
 2016-03-08 13:58:41 -08:00
Todd Gamblin
df84677d16 Make diy generate verbose build output by default. 
- added -q option to shut it up
 2016-03-08 13:57:13 -08:00
Todd Gamblin
a1be45d0e7 Fix bug with setting module-scope vars in derived package classes. 2016-03-08 13:56:44 -08:00
Todd Gamblin
a4861a3072 Minor changes/bugfixes on md5/checksum PR 2016-03-08 10:39:46 -08:00
Todd Gamblin
747855b960 Merge branch 'fixes/md5' of git://github.com/epfl-scitas/spack into epfl-scitas-fixes/md5 2016-03-08 09:12:57 -08:00
Todd Gamblin
31cebb969a Merge pull request #504 from LLNL/bugfix/github-502 
Bugfix/GitHub 502: Error: No spec file found at path
 2016-03-08 03:43:52 -08:00
Todd Gamblin
214deeda54 Merge branch 'features/noexpand' into develop 
Conflicts:
	lib/spack/llnl/util/filesystem.py
 2016-03-08 03:29:57 -08:00
Todd Gamblin
5aadb6df19 Fixes #502. Create install prefix before build, clean up do_install. 
- Fix bug introduced during merge of stage refactor.
  - install prefix was not created before build_environment.fork()
    - build_environment.fork() calls setup_dependent_environment
    - python's setup_dependent_environment can inadvertently create
      the install prefix before directory_layout expects it.

- Clean up Package.do_install:
  - simplify control flow: parent process now entirely responsible for
    creating/destroying the install prefix. cleanup is now in one place.
  - Hoisting cleanup out of the child improves nesting of try/catch in
    `real_work`.
  - `real_work` renamed to `build_process`
 2016-03-08 02:50:26 -08:00
alalazo
77ec27c730 fixed bug : similar issues in checksum and md5 as were solved in ad103dcafa 2016-03-08 11:09:41 +01:00
Todd Gamblin
96e1b2d25c Merge pull request #486 from RemoteConnectionManager/paraview_fix 
Paraview new version
 2016-03-07 02:48:12 -08:00
Todd Gamblin
4d1703fc06 Merge branch 'features/repos-doc-fix' into develop 2016-03-07 02:40:59 -08:00
Todd Gamblin
12ddf241a5 Fix code block in docs. 2016-03-07 02:39:14 -08:00
Todd Gamblin
547933e7e4 Fix bug in -Xlinker argument handling 
- also update test to match.
 2016-03-07 01:48:26 -08:00
Todd Gamblin
f2bcc6cc35 Merge branch 'eschnett/rpath-comma' of git://github.com/eschnett/spack into eschnett-eschnett/rpath-comma 2016-03-06 23:50:14 -08:00
Erik Schnetter
265ef337a8 Don't quote -rpath literal 2016-03-06 23:27:30 -05:00
Todd Gamblin
108277fb5d Fix docs that have gone stale since repos were added. 2016-03-06 19:32:00 -08:00
Todd Gamblin
ada675dea2 Merge branch 'features/sbang' into develop 
Conflicts:
	lib/spack/llnl/util/filesystem.py
 2016-03-06 19:30:19 -08:00
Todd Gamblin
1ee90a6fe7 Make spack_cc, spack_cxx, spack_f77, spack_fc available in build env. 
- Add for convenience for packages that need to refer to these.
- Added an example in the documentation.
 2016-03-06 16:57:30 -08:00
Todd Gamblin
240ada5775 Add expand=False option for URL downloads. 
- Allows skipping the expand step for downloads.
  - Fixed stage so that it knows expansion didn't fail when there is a
    no-expand URLFetchStrategy.

- Updated docs to reflect new option, and provided an example.
 2016-03-06 16:51:09 -08:00
Todd Gamblin
e515042a36 Fix stage creation bug, simplify do_install code. 2016-03-06 01:41:48 -08:00
Todd Gamblin
ad103dcafa Small refactor: add keep parameter to stage, get rid of stage.destroy call. 
- package.py uses context manager more effectively.

- Stage.__init__ has easier to understand method signature now.
  - keep can be used to override the default behavior either to keep
    the stage ALL the time or to delete the stage ALL the time.
 2016-03-05 20:00:30 -08:00
Todd Gamblin
14d48eba46 Revert c5d9ee8924 for bug fixes. 
- This reverts commit c5d9ee8924.

- merged too soon before
- reverting and fixing bugs now.

Conflicts:
	lib/spack/spack/mirror.py
	lib/spack/spack/package.py
 2016-03-05 18:40:28 -08:00
Todd Gamblin
097df180e2 Merge pull request #493 from adamjstewart/features/pgi 
Modifications to get PGI working
 2016-03-05 14:19:15 -08:00
Todd Gamblin
bfce2c7508 Fix bug in hook: ensure bin directory exists before listing. 2016-03-05 04:42:52 -08:00
Todd Gamblin
fc6aa7374a Fix #104, #54: issues with overlong shebang in deep directories. 
This does several things:

- Add `sbang`: a script to run scripts with long shebang lines.
  - Documentation for `sbang` is in `bin/sbang`.

- Add an `sbang` hook that filters the `bin` directory after install
  and modifies any scripts wtih shebangs that are too long to use
  `sbang` instead.

- `sbang` is at the top level, so it should be runnable (not much we
  can do if spack itself is too deep for shebang)
  - `sbang`, when used as the interpreter, runs the *second* shebang
    line it finds in a script.
  - shoud fix issues with too long shebang paths.
 2016-03-05 04:18:48 -08:00
becker33
6449e8b1b9 Merge pull request #492 from adamjstewart/typos/compiler 
Typo fix in compiler docstring
 2016-03-04 14:25:56 -08:00
Adam J. Stewart
5db9673904 Typo fix in compiler docstring 2016-03-04 10:51:41 -06:00
citibeth
202fbc6812 Rmoved periods. Should help use of cut'n'paste from console windows. 2016-03-03 23:40:29 -05:00
Adam J. Stewart
311d71ec86 Modifications to get PGI working 2016-03-03 16:50:51 -06:00
Todd Gamblin
c5d9ee8924 Revert "refactoring proposal : turn Stage into a context manager" 2016-03-03 14:41:20 -08:00
Luigi Calori
a531a4f5e3 help spack versions paraview to get versions without v 2016-03-03 18:00:50 +01:00
alalazo
db92699c02 test : fixed tests that were broken by import optimization 2016-03-03 11:05:36 +01:00
alalazo
7f4a69319a Merge branch 'develop' of https://github.com/LLNL/spack into refactoring/stage 
Conflicts:
	lib/spack/spack/package.py
 2016-03-03 10:19:45 +01:00
alalazo
5ef3621556 stage : minor syntax fix 2016-03-03 10:10:30 +01:00
Todd Gamblin
6701977f1a Merge pull request #475 from LLNL/features/env-and-package-provenance 
Features/env and package provenance
 2016-03-03 00:42:40 -08:00
alalazo
353d12d2e6 stage : added create function as decided in #477 comments 2016-03-03 09:18:47 +01:00
alalazo
717bcb8624 test : optimized import statements 2016-03-03 09:17:49 +01:00
Gregory Becker
4f9a309de8 made spack more conservative in compiler strategies attempted 2016-03-02 16:35:02 -08:00
Gregory Becker
487b2495a1 made spack more conservative in compiler strategies attempted 2016-03-02 16:33:10 -08:00
Mario Melara
2b48728741 Changed os subclasses CNL to change attribute to MODULES 2016-03-02 16:15:34 -08:00
Mario Melara
58efe1550d Default PATH arg 2016-03-02 16:14:42 -08:00
Gregory Becker
16d8c25b23 fixed floating 'target' 2016-03-02 16:12:32 -08:00
Gregory Becker
65d4169f00 fixed type/bug 2016-03-02 16:03:11 -08:00
Gregory Becker
ffb9574312 fixed type/bug 2016-03-02 15:59:23 -08:00
Gregory Becker
6e7b00a0f6 Made module handling much saner and safer 2016-03-02 15:54:23 -08:00
Mario Melara
b4298979fe Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch 2016-03-02 14:18:19 -08:00
Gregory Becker
676591ffc0 fixed a bug and a test bug 2016-03-02 14:17:46 -08:00
Mario Melara
975cba295b Added 'better' tests 2016-03-02 14:16:57 -08:00
Mario Melara
e46bac19fa Changed architecture to dict 2016-03-02 12:09:02 -08:00
Mario Melara
90e90f61c1 Got rid of the compiler strategy from target 2016-03-02 12:08:43 -08:00
Mario Melara
47c8e1366f Changed to_dictionary and from_dictionary methods 2016-03-02 12:08:17 -08:00
Gregory Becker
25f20b1967 bug hunting 2016-03-02 11:40:21 -08:00
Glenn Johnson
6bbadbfaac Add CPATH pointing to include directories. 2016-03-02 13:18:43 -06:00
Mario Melara
340ecf6e9a Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch 2016-03-02 11:07:52 -08:00
Gregory Becker
86e90bba87 another partial, narrowing in on proper arch 2016-03-02 11:05:05 -08:00
Mario Melara
81e236b2de Changed Arch to class instead of namedtuple. Now platform is automatically set upon creation of class 2016-03-02 11:04:55 -08:00
Gregory Becker
45887dec8e partial work on bug hunting 2016-03-02 10:56:46 -08:00
Mario Melara
f27f2f8e49 Fixed some indentation errors 2016-03-02 10:27:12 -08:00
Mario Melara
4d74784209 Changed add_architecture_from_string and split the work done into two methods add_target_from_string and add_operating_system_from_string 2016-03-02 10:27:00 -08:00
Mario Melara
527bb7abfe Changed _cmp_key 2016-03-02 10:26:09 -08:00
Todd Gamblin
9f6ebd7c6e Merge pull request #465 from citibeth/efischer/160229-RemoteRootBugfix 
Bug Fix: When Spack create roots around for other versions, it someti…
 2016-03-02 10:24:17 -08:00
Gregory Becker
615ea969f8 made arch instantiate as a tuple 2016-03-02 10:14:50 -08:00
Gregory Becker
4601c36f57 cleaned up concretize architecture 2016-03-02 09:55:44 -08:00
alalazo
21cd05aad5 package : updated doc 2016-03-02 17:28:21 +01:00
alalazo
ca41909ec5 package : removed do_clean() 2016-03-02 17:19:27 +01:00
alalazo
4d63544fe9 remove_link_tree : moved to llnl.util.filesystem 2016-03-02 16:55:57 +01:00
alalazo
901e4851b9 _cleanup_dead_links : factored method into a function and put it in llnl.filesystem 2016-03-02 16:19:32 +01:00
alalazo
9001b9ed3c package : minor syntax fixes 
mirror : extracted add_single_spec from create
 2016-03-02 15:56:09 +01:00
alalazo
d649b715ed stage : updated functions doc 
_cleanup_dead_links : fixed minor bug
 2016-03-02 13:16:04 +01:00
alalazo
65b2a24f7c stage : removed _setup method 2016-03-02 13:03:40 +01:00
alalazo
726b350689 test : fixed failing unit tests 2016-03-02 12:52:38 +01:00
Todd Gamblin
a0c6519de9 Fixes #476: create was broken for FTP URLs. 2016-03-02 01:47:54 -08:00
Todd Gamblin
52081c46d6 Fixes #469: Store package.py files in the .spack directory. 
- Adds packages in spack repos inside the .spack directory, so that
  packages can be rebuilt automatically later.
 2016-03-02 00:09:24 -08:00
Todd Gamblin
21d125c914 Fixes #175: Dump environment provenance as well as build log. 2016-03-02 00:08:36 -08:00
Todd Gamblin
be306d09e9 Move repo creation code into repository.py 2016-03-02 00:04:46 -08:00
Todd Gamblin
c488f7c4d8 Fix bug in install permission setting. 2016-03-01 23:57:34 -08:00
Adam J. Stewart
a9f0b98d4d Typo fix 2016-03-01 15:53:53 -06:00
Elizabeth F
a339ac0a72 Bug Fix: When Spack create roots around for other versions, it sometimes finds files it thinks are tarballs, but are not. Previously, it would crash if any such files are found. This change allows it to simply skip them and move on, processing the rest of the files it finds correctly. 2016-02-29 23:04:11 -05:00
Ian Lee
67f327f805 Updated links to use new llnl.gov address 2016-02-28 19:47:19 -08:00
Mario Melara
b591d2b501 Changed operating_system path 2016-02-25 18:49:52 -08:00
Mario Melara
ccd4a79b39 changed architecture.target to architecture.platform_os, so that compiler_for_spec uses operating system strategy 2016-02-25 18:49:27 -08:00
Mario Melara
eb96f38298 Got rid of debug comment 2016-02-25 18:48:25 -08:00
Mario Melara
f0149faf88 Added doc strings to functions in architecture.py 2016-02-25 18:48:00 -08:00
Mario Melara
ac55ce989d Changed compiler finding strategy to come from operating system instead of target 2016-02-25 18:47:41 -08:00
becker33
7176e5ef07 Merge pull request #299 from epfl-scitas/enhancement/os_detection 
enhancement proposal : boolean support for when=<arg>
 2016-02-25 13:38:03 -08:00
Mario Melara
5989e3f65d Changed from_dict to arch_from_dict method 2016-02-25 11:53:02 -08:00
Mario Melara
5e4d3e7b82 Changed naming convention of operating_system, makes it easier to create instance from dictionary just using name without the version attached. Object will stil display as name+version 2016-02-25 11:48:43 -08:00
Mario Melara
550df4cdd6 Some cleaning up. Finally got arch_from_dict working successfully. 2016-02-25 11:47:27 -08:00
Mario Melara
9ac2556285 Deleted old operating_system (without the s) file 2016-02-25 10:41:28 -08:00
Mario Melara
b43a5498a1 Changed import path to operating_systems 2016-02-25 10:36:47 -08:00
Mario Melara
f161609929 Renamed operating_system to operating_systems 2016-02-25 10:36:12 -08:00
Mario Melara
34be473b7c Deleted files 2016-02-25 10:35:58 -08:00
Mario Melara
863a5bc4fa Fix for 'Parent module spack.operating_systems not found while handling absolute import' 2016-02-25 10:34:55 -08:00
Mario Melara
8d1c06d141 Changed to dict method. Didn't realize this was being assigned to a dictionary already so got rid of d['architecture'] 2016-02-24 15:38:33 -08:00
Mario Melara
bd7c189c12 Added more comments 2016-02-24 15:37:50 -08:00
Mario Melara
5c3c6e7f06 Got rid of print statements 2016-02-24 15:34:32 -08:00
Mario Melara
234681306c Changed to appropriate class names for operating system 2016-02-24 15:32:23 -08:00
Mario Melara
2de81cfc62 Changed name to appropriate camelcase 2016-02-24 15:31:21 -08:00
Mario Melara
9e844d974c Added comments. Need to figure out how to make arch_tuple from_dict 2016-02-24 15:30:20 -08:00
Mario Melara
7779974143 arch_from_dict worked on 2016-02-24 15:02:40 -08:00
Mario Melara
339f4bfd23 Added unit testing for to_dict method 2016-02-24 12:16:09 -08:00
Mario Melara
5d5d3c5858 Added to dictionary method 2016-02-24 12:15:52 -08:00
alalazo
6f42dd556d stage : on-going refactoring 2016-02-24 17:37:58 +01:00
alalazo
5ce97eeda5 intel : polished code 2016-02-24 09:17:04 +01:00
Massimiliano Culpo
4316f1cd31 Modified wrapper to have a different behavior when modeis vcheck 2016-02-23 16:57:19 +01:00
Mario Melara
cfa7c4feb8 Added CNL10 as back_os and default_os 2016-02-22 16:18:25 -08:00
Mario Melara
083b7b46d9 Added more tests 2016-02-22 16:17:54 -08:00
Mario Melara
3c87d137a3 Added compiler strategy entry and also added new operating system subclass called CNL for compute node linux (name will probably change because I can't find docs on the EXACT name) 2016-02-22 16:17:33 -08:00
Mario Melara
ebc5e26c2d Added compiler strategy field to Operating System class 2016-02-22 16:16:20 -08:00
Mario Melara
a385dae1ae Unit tests to test operating system subclass creation and whether compiler strategy is set correctly 2016-02-22 14:54:30 -08:00
Mario Melara
1367ccab93 New folder that will hold operating system subclasses 2016-02-22 14:53:55 -08:00
Mario Melara
22bf4bc080 import linux distro subclass. Added method to add operating system to platform dictionary 2016-02-22 14:53:16 -08:00
Mario Melara
1a7d6ed49a import MacOSX subclass and added add_operating_system method to use subclass 2016-02-22 14:52:52 -08:00
Mario Melara
725d6d5fce import linux distro operating system subclass, set front-end os to LinuxDistro() 2016-02-22 14:52:09 -08:00
Mario Melara
a8de45ce28 Got rid of methods used to detect mac osx and linux osx. Now those methods are used my operating system subclasses 2016-02-22 14:50:51 -08:00
Mario Melara
18ddbae60e Added new module path to operating system file 2016-02-22 14:49:53 -08:00
Todd Gamblin
3c1aa9a4ad Merge pull request #298 from epfl-scitas/refactoring/resource_directive 
refactoring proposal : composite for Stage and FetchStrategy
 2016-02-18 23:13:12 -08:00
Mario Melara
28218755a5 Changed spec.target to spec.architecture 2016-02-18 13:06:55 -08:00
Todd Gamblin
d8a70166d3 Fixes #434 
Compiler detection was not getting triggered properly with some of the
new config logic.  Adjust the conditions under which Spack will serach
for compilers.
 2016-02-18 00:56:29 -08:00
Todd Gamblin
c112cf66fe Merge pull request #443 from trws/dicts-like-string-keys 
remove the unprotected key name from create.py
 2016-02-17 17:06:51 -08:00
Tom Scogland
00125e4688 remove the unprotected key name from create.py 
Small fix to use dicts correctly.
 2016-02-17 16:43:36 -08:00
Mario Melara
93a92a00ee Changed abstract.target to abstract.architecture.target and abstract.architecture.target.concrete 2016-02-17 14:53:09 -08:00
Mario Melara
d9e8bf1807 Added ARCHITECTURE field when showing specs 2016-02-17 14:51:14 -08:00
Mario Melara
54042e399b Changed target to architecture.target 2016-02-17 14:50:10 -08:00
Mario Melara
1d484dbe5f Changed so that modules use correct file path with spec.architecture instead of spec.target 2016-02-17 14:49:36 -08:00
Mario Melara
ab4006ee2c Changed so that directory layout uses the platform-os-target string version of the arch tuple 2016-02-17 14:48:53 -08:00
Mario Melara
524e9b372e From now on all targets are now architecture. Architecture is a named tuple so any time we need access to target we do architecture.target. 2016-02-17 14:47:29 -08:00
Mario Melara
2c20fc2ebf Changed module loading to use arch tuple instead of regular target.module 2016-02-17 14:45:53 -08:00
Mario Melara
2a79537ba1 Fixed silly typo that gave errors in tests 2016-02-17 14:44:38 -08:00
Mario Melara
a3039c4c67 Changed add_architecture_from_string, it now loops through the string and checks whether each piece of string is a valid platform, operating system and target. If the operating system or target are none it will use the defaults. Updated the documentation for that method. One thing that bothers me is how to account for the multitude of operating systems when cross compiling. If someone wants to compile with another operating system not found on current platform. How can spack check to see if it is valid? 2016-02-16 15:26:07 -08:00
Mario Melara
62b0293963 Cleaned up the file. Got rid of commented out sections of code since they weren't going to be used anyway 2016-02-16 15:23:38 -08:00
Mario Melara
31ab238306 Beginning attemps to fix concretization method to account for the new tuple architecture 2016-02-16 15:22:23 -08:00
Mario Melara
19dca4bcc9 Added some _cmp_key methods to OperatingSystem class, and also changed the way Platforms are compared. Created a mini inherited class named Arch that inherits from namedtuple. The reason for this is to override the namedtuple __str__ method to make arch tuples look prettier when printed out. Rather than Arch(platform= ... ) it prints to platform-os-target which makes directory paths to packages look cleaner. 2016-02-16 15:21:36 -08:00
Mario Melara
35a602baaf Changed target checking to architecture checking for abi compatible 2016-02-16 15:17:57 -08:00
Erik Schnetter
9868333e8e Shell quoting is difficult 2016-02-14 11:34:08 -05:00
Erik Schnetter
a06e29fecb More quoting experiments 2016-02-14 10:43:55 -05:00
Erik Schnetter
43670cbbd0 More games with quoting 2016-02-13 22:01:36 -05:00
Erik Schnetter
52647b9a5d Using regexes instead of globbing to match path names 2016-02-13 17:55:14 -05:00
Mario Melara
c799301011 Changed the method in which architecture is converted from string to namedtuple. Also added some TODO comments to later consider changing how architecture is handled 2016-02-13 14:37:07 -08:00
Mario Melara
7732f375d2 Changed operating system getter so that linux and darwin autodetected operating systems are set as class default_os 2016-02-13 14:36:01 -08:00
Erik Schnetter
69064395eb Add debug output 2016-02-13 15:12:09 -05:00
Erik Schnetter
9a2c1090a6 Handle -Wl,-rpath,... syntax 2016-02-13 14:54:18 -05:00
Erik Schnetter
dc6a33b716 Handle multiple -Wl,-rpath,... paths 2016-02-13 14:54:18 -05:00
Erik Schnetter
5038a38e29 Correct -Xlinker arguments 2016-02-13 14:54:18 -05:00
Erik Schnetter
2cd9ad8ce6 Use "-Wl,-rpath," instead of "-Wl,-rpath=" 
The former translates to a linker argument "-rpath DIR", whereas the latter translates to "-rpath=DIR". The latter is not support on OS X.
 2016-02-13 14:54:18 -05:00
Erik Schnetter
ff81aff254 Remove source-code optimization and cleanup 2016-02-12 13:05:42 -05:00
Erik Schnetter
64436e7752 Merge branch 'develop' into correct-cc 2016-02-12 12:55:26 -05:00
David Beckingsale
90e1b1f0ea Use hash to make shorter module and dotkit names, fixes #433 2016-02-12 09:33:19 -08:00
Mario Melara
8e8c63bd67 Using pylint, fixed some of the indentation and spacing errors 2016-02-11 11:47:39 -08:00
Mario Melara
3e1be63b0f Changed some variables to account for the fact that target is now a tuple 2016-02-11 11:15:50 -08:00
Mario Melara
b9d09202c9 changed some variables to account for the fact that target is now a tuple 2016-02-11 11:15:19 -08:00
Mario Melara
77e93e1b79 Added add_os method to platform subclasses 2016-02-10 16:16:58 -08:00
Mario Melara
cb8d5ab183 Added new add_os method 2016-02-10 16:16:35 -08:00
Mario Melara
fb234205c2 Added method to concretize target and os pair 2016-02-10 16:16:11 -08:00
Mario Melara
d0ae6dd401 Changed add_target_from_string to include methods to concretize operating_system 2016-02-10 16:15:25 -08:00
Mario Melara
2650c60374 Added operating system class prototype and some autodetect features for operating system 2016-02-10 16:14:50 -08:00
Todd Gamblin
bcf705b85e Merge pull request #432 from RemoteConnectionManager/paraview_fix 
Paraview fix
 2016-02-10 13:59:08 -08:00
Mario Melara
21a5a34041 Revert "new branch and also pushing some architecture changes where os is detected by linux and darwin and manually set by cray and bgq" 
This reverts commit 70088be24b2ed34076f7f5292a2a465a8655a886.
 2016-02-10 10:59:16 -08:00
Luigi Calori
25e2be3efd RPATH was collecting all lib from all dependencies, when dep tree is deep like in ParaView the path was growing too much, showing install problems now just direct dependencies rpath is added 2016-02-10 13:28:01 +01:00
Todd Gamblin
f7134990bd Fix #430: edit -f fails with UnknownPackageError 
- Recent external repo refactoring made `repo_for_pkg` raise an error
  when the package was not known.

- Correct behavior is to return the highest precedence repo.
 2016-02-09 08:57:27 -08:00
Mario Melara
0358522533 new branch and also pushing some architecture changes where os is detected by linux and darwin and manually set by cray and bgq 2016-02-06 15:41:22 -08:00
Nicolas Richart
824546d343 correcting a bug when url and files are mixed 2016-01-28 14:43:30 +01:00
Nicolas Richart
5850d8530e Adding the stager to checksum any url that spack can handle 2016-01-28 14:22:28 +01:00
alalazo
0cf03518f3 reverted deletion of the wrong architecture.py 2016-01-28 12:06:30 +01:00
alalazo
603f5e69ee removed outdated code : os detection (will be handled by platforms) and openssl modifications 2016-01-28 11:30:28 +01:00
alalazo
e76b722e28 Merge branch 'develop' of https://github.com/LLNL/spack into enhancement/os_detection 2016-01-28 11:26:01 +01:00
alalazo
07bb6fef01 resource directive : now works with all the fetch strategies available 2016-01-28 10:58:56 +01:00
alalazo
47035671e8 unit tests : now compliant with 2.6 2016-01-27 17:22:12 +01:00
alalazo
f7f192e12b Added unit tests for util.pattern 2016-01-27 17:12:24 +01:00
Gregory L. Lee
7891346a4f fix for issue 398, added extensions_for in RepoPath 2016-01-26 09:52:01 -08:00
alalazo
ee6f69a227 Unit tests : hack to make them pass while a decision on how to proceed is made 2016-01-26 14:25:16 +01:00
alalazo
5e3b7a4247 Fixes issues introduced after merge with conflicts 2016-01-26 14:11:23 +01:00
alalazo
093b831799 Fixes issues introduced after merge with conflicts 2016-01-26 12:08:28 +01:00
alalazo
6f11a64af5 Merge branch 'develop' of https://github.com/LLNL/spack into refactoring/resource_directive 
Conflicts:
	lib/spack/spack/fetch_strategy.py
	lib/spack/spack/mirror.py
	lib/spack/spack/package.py
 2016-01-26 08:59:25 +01:00
Matthew LeGendre
d4a771a623 Merge pull request #1 from alalazo/features/external-packages 
doc : minor typos fixed
 2016-01-25 10:53:37 -08:00
Matthew LeGendre
fa888a4ba1 Merge branch 'develop' into features/external-packages 
Conflicts:
	lib/spack/spack/cmd/mirror.py
	lib/spack/spack/concretize.py
	lib/spack/spack/config.py
	lib/spack/spack/spec.py
	lib/spack/spack/stage.py
	var/spack/packages/mvapich2/package.py
 2016-01-25 10:52:17 -08:00
Todd Gamblin
004c99ab2f Fixes #259: Apple clang compiler detection 
- Clang compilers are now versioned with the raw LLVM version or, on
  macs, with Apple's version with a suffix.
 2016-01-25 03:48:22 -08:00
Adam J. Stewart
fb5274145a Fix regex to find version on OS X 2016-01-25 03:10:13 -08:00
Todd Gamblin
41cd8f8e6d Fixes #74: minor fixes to spack mirror. 2016-01-25 02:57:23 -08:00
Todd Gamblin
5502fd1054 More thorough mirror test: test full round-trip 
- Old test: did not attempt to actually fetch mirrored packages.

- New test:
  1. Creates a temporary mirror,
  2. Registers it with spack,
  3. Fetches from it, and
  4. Verifies that the fetched archive matches the original

- This test will hopefully mean that `spack mirror` is less brittle
  from now on.
 2016-01-25 01:59:02 -08:00
Todd Gamblin
a48d0a494f Refactor mock_repo: add a destroy() method. 
- classes using mock_repo need not know about its stage now.
 2016-01-25 00:34:33 -08:00
Todd Gamblin
d3ff8ca00f Fixes #382: Issues with spack fetch. 
- urljoin() was compliant with RFC 1808 but not with my understanding
  of how paths should be joined.
- updated path joining logic to comply.
 2016-01-24 20:14:40 -08:00
Todd Gamblin
fe50593c66 Minor line width reductions. 2016-01-24 20:14:21 -08:00
Todd Gamblin
be354e85c9 Better errors for mkdirp failure in mirror. 2016-01-24 16:16:43 -08:00
Todd Gamblin
64a9549225 Minor cleanup. 80 char width for command description. 2016-01-24 15:31:07 -08:00
Adam J. Stewart
571386cdf4 Remove cxx symlink, tell NAG to look for c++ symlink 2016-01-21 13:55:59 -06:00
Adam J. Stewart
ca3edc3673 Add symlink cxx to point to cc 2016-01-21 13:20:39 -06:00
Todd Gamblin
10848c2e9a Refactor args for Executable.__call__ 
- simplify output, error, and input redirection
- `return_output=True` is now `output=str`
- `return_output=True` will still work for the time being but is
  deprecated.

- previously you could say `return_output=True` and `output=<stream>`,
  which wouldn't actually write to the stream.  Now you actually can't
  specify erroneous cases since there is only one parameter with
  mutually exclusive options..
 2016-01-21 10:46:33 -08:00
Todd Gamblin
1c2a2dde8e Merge pull request #350 from adamjstewart/features/nag 
Add NAG Fortran Compiler support
 2016-01-20 17:09:31 -08:00
Adam J. Stewart
088b6f0ea9 Fixed typo when running spack help 2016-01-20 17:19:01 -06:00
Adam J. Stewart
e25150296a Redirect STDERR to STDOUT for compiler version 
This is necessary for the NAG Fortran compiler, which prints its version message to STDERR instead of STDOUT. This message was previously being ignored, preventing spack from finding the compiler's version or automatically adding it to the compilers.yaml configuration file.
 2016-01-20 14:44:43 -06:00
Mario Melara
840b41c450 Removed unneccessary $. Still learning regexp 2016-01-20 10:36:15 -08:00
Mario Melara
15713219e5 Better regular expression searching. Tested on edison was finding test compilers and then spack was giving multiple compiler match errors 2016-01-20 10:32:56 -08:00
alalazo
72d5cdf9ab fixed two minor typos 2016-01-20 11:19:36 +01:00
Ben Boeckel
6c9800bcc3 typos: fix some letter transposes 2016-01-19 15:22:16 -05:00
Adam J. Stewart
83de658ee4 Modify nag.py to match new compiler package structure 2016-01-19 13:28:35 -06:00
Adam J. Stewart
e6aa2610bc Add symlink for NAG Fortran Compiler 2016-01-19 13:07:07 -06:00
Adam J. Stewart
fe640d764a Merge branch 'develop' into features/nag 
* develop: (77 commits)
  Make libxcb compile with gcc 4.9.
  disable parallel install for glib (found races)
  disable cairo-trace, which is incompatible with older libiberty.h.
  Fix LaunchMon on newer gcc versions.
  Simplify output redirection in spack.util.executable
  Allow completely empty config files.
  Update cmake package to use http in all URLs.
  Fix create, diy, edit, and repo commands to use multiple repos.
  Add namespace option to find command.
  Temporary fix: Clang is the default compiler on Mac OS X.
  Netcdf requires cmake >=2.8.12
  Mbedtls depends on cmake
  Update libtool to 2.4.6
  Update Julia to 0.4.3
  Make binutils build on OS X
  Add verbs and psm variants
  py-matplotlib: depend on freetype
  py-numpy: make blas/lapack optional dependencies
  qhull: apply patch to work with libc++'s standard library
  New package GNU tar
  ...
 2016-01-19 09:56:02 -06:00
Todd Gamblin
cee7bfa9f0 Simplify output redirection in spack.util.executable 
- By default inherit parent's input/output descriptor
- Only use pipes if we need to return output.
- Allows subprocesses (like emacsclient) to detect terminal correctly
 2016-01-19 01:16:14 -08:00
Todd Gamblin
ad32f64ef6 Allow completely empty config files. 
- Previous version would give validation error for an empty file.
  Now this is properly ignored.

- Also includes bugfix in ConfigFormatError
 2016-01-19 01:16:14 -08:00
Todd Gamblin
8d6342c53d Merge branch 'mplegendre-multi_pkgsrc_roots' into develop 
- This moves var/spack/packages to var/spack/repos/builtin/packages.

- Packages that did not exist in the source branch, or were changed in
  develop, were moved into var/spack/repos/builtin/packages as part of
  the integration.

Conflicts:
	lib/spack/spack/test/unit_install.py
	var/spack/repos/builtin/packages/clang/package.py
 2016-01-19 01:16:08 -08:00
Todd Gamblin
c1e57e49ae Merge pull request #202 from scheibelp/features/unittest-xml-output-nose 
Features/unittest xml output nose
 2016-01-17 19:14:49 -08:00
Todd Gamblin
97b492756a Fix create, diy, edit, and repo commands to use multiple repos. 2016-01-17 18:14:35 -08:00
Todd Gamblin
5984bc2ad3 Add namespace option to find command. 2016-01-17 18:12:53 -08:00
Todd Gamblin
358b2ab4ba Temporary fix: Clang is the default compiler on Mac OS X. 2016-01-17 18:12:08 -08:00
Gregory Becker
8e54babf10 minor parsing bug fix 2016-01-15 17:21:32 -08:00
Gregory Becker
e1a0af8745 cleanup 2016-01-15 16:51:41 -08:00
Gregory Becker
16e9d658d5 Fixed the way flags on deps are attached so that they aren't moved onto the root before normalize/concretize 2016-01-15 16:18:40 -08:00
Gregory Becker
342f4bc2e0 Fixed virtual/cflag combination bug 2016-01-15 14:27:50 -08:00
Todd Gamblin
aa00999fca update compiler config test. 2016-01-14 12:00:56 -08:00
Todd Gamblin
d869d8e86f add sanity check on config write as well as validation on read. 2016-01-14 12:00:44 -08:00
Todd Gamblin
b567cb57e1 Add jsonschema validation for config files. 2016-01-14 10:41:35 -08:00
Todd Gamblin
05b30bf83e Make text wrapping off by default in tty, add a kwarg for it. 2016-01-14 10:26:31 -08:00
Adam J. Stewart
f9fbb57d31 Add NAG Fortran Compiler support 2016-01-13 12:32:04 -06:00
Gregory Becker
848728858c Removed extra plus signs from command line syntax. Did not yet remove them from printed format 2016-01-12 18:34:26 -08:00
Gregory Becker
5e3c883f2c Cleanup and proper flag satisfaction for partial specs 2016-01-12 16:25:54 -08:00
Gregory Becker
528f9cd583 Implemented flags as lists for subsetting 2016-01-12 15:22:15 -08:00
Gregory Becker
2ac5ea42af Fixed concretization 2016-01-11 13:55:11 -08:00
Mario Melara
aab1a67d05 Adding needed import modules. Changed platform_name to platform to prevent syntax errors 2016-01-09 09:42:36 -08:00
Gregory Becker
9615efd940 cleanup: Removing an unnecessary line in an otherwise unchanged file 2016-01-08 18:53:19 -08:00
Gregory Becker
41046499c6 minor bug chasing 2016-01-08 18:51:38 -08:00
Gregory Becker
6e5238d037 Fixing the fix and removing debug printing 2016-01-08 17:44:16 -08:00
Gregory Becker
2b2d4bae4e Fixing multimethod test for new platforms 2016-01-08 17:38:37 -08:00
Gregory Becker
2b4dd8b9af Fixed target satisfaction and updated tests accordingly 2016-01-08 16:30:27 -08:00
Gregory Becker
aa28e4e81f Improved error messages for compiler_for_spec when either zero or multiple compilers returned. 2016-01-08 15:13:48 -08:00
Gregory Becker
d3d37ad0ce removed the submodule as part of reversion of extraneous commits 2016-01-08 14:29:42 -08:00
Gregory Becker
ba63111f45 brought the architecture test up to date with new changes 2016-01-07 13:05:58 -08:00
Gregory Becker
53d4f82ce1 Improved cray architecture class 2016-01-07 13:01:05 -08:00
Gregory Becker
83917c4c30 Improved target specification 2016-01-07 12:43:39 -08:00
Gregory Becker
6ccd9d6fa4 Cleaned up naming conventions for architecture, split into platform and target 2016-01-07 11:49:01 -08:00
Gregory Becker
b4a0004f44 Improved target cmp_key and to/from yaml functions 2016-01-06 14:50:31 -08:00
Gregory Becker
51bd91edc0 made the compiler strategy more easily controllable 2016-01-06 13:00:22 -08:00
Gregory Becker
61b03b72b0 improved concretize efficiency for determining whether compilers come from the proper strategy 2016-01-05 19:03:25 -08:00
Gregory Becker
93c9c45580 minor tweak of compiler priority while waiting for customizable compiler priorities 2016-01-05 17:19:04 -08:00
Gregory Becker
29e0ff61d7 fixed compiler finding so as not to identify non-existent versions of the intel compiler based on the version numbers of the PrgEnv-intel module 2016-01-05 17:14:35 -08:00
Gregory Becker
c649610473 fixed concretization to only consider compilers found by the proper strategy 2016-01-05 17:00:28 -08:00
Gregory Becker
d6768cf921 minor bug fix 2016-01-05 16:23:32 -08:00
Gregory Becker
48b9023de4 removed debug printing 2016-01-05 14:51:18 -08:00
Gregory Becker
751503c434 fixed haswell targeting bug 2016-01-05 14:47:14 -08:00
Gregory Becker
1edbaa4e62 removed debug printing 2016-01-05 14:13:09 -08:00
Gregory Becker
9848ad32fd fixed errors caused by crayport on linux and added a darwin architecture 2016-01-05 13:39:53 -08:00
Gregory Becker
d2c2c46541 bug hunting 2016-01-05 11:12:14 -08:00
Gregory Becker
751208cedf pick last compiler instead of first, will be overwritten by more advanced preferences as mentioned in the email group 2016-01-04 16:35:06 -08:00
Gregory Becker
53808f254e Support for cray external dependencies implemented in modules 2016-01-04 12:36:48 -08:00
Gregory Becker
ff82e41404 Merge branch 'externals' into crayport 2016-01-04 10:46:25 -08:00
Todd Gamblin
b02faf5641 add/remove/list working for new config format. 
- mirrors.yaml now uses dict order for precedence, instead of lists of
  dicts.

- spack.cmd now specifies default scope for add/remove and for list
  with `default_modify_scope` and `default_list_scope`.
  - commands that only read or list default to all scopes (merged)
  - commands that modify configs modify user scope (highest
    precedence) by default
  - These vars are used in setup_paraser for mirror/repo/compiler.

- Spack's argparse supports aliases now.
  - added 'rm' alias for `spack [repo|compiler|mirror] remove`
 2016-01-03 02:27:50 -08:00
Todd Gamblin
21fae634a5 Add Python 3 aliases to our argparse backport. 2016-01-03 01:19:03 -08:00
Todd Gamblin
56937416a9 All tests that call concretize() need to be MockPackagesTests. 2016-01-02 18:18:00 -08:00
Todd Gamblin
20b7f8a8e0 Fix bug in tests. 2016-01-02 14:25:10 -08:00
alalazo
bf4231dd4b depends_on and when multimethod support boolean 2016-01-02 22:48:14 +01:00
alalazo
d95d169ac5 fixed broken unit tests 2016-01-02 19:04:06 +01:00
alalazo
f499f71f64 Package : factored out code in do_stage and do_fetch, changed mirror command accordingly 2016-01-02 16:15:30 +01:00
alalazo
dcddb19e5b added class decorator to define composite classes 2016-01-01 17:35:01 +01:00
Tom Scogland
4ae98f8b21 significant llvm update 
This update significantly reworks the llvm and clang packages.  The llvm
package now includes variants allowing it to build and install any and
all of:

* clang
* lldb
* llvm's libunwind (why, WHY did they name it this?!?)
* polly (including building it directly into the clang tools, 3.7.0 only)
* clang extra tools
* compiler-rt (sanitizers)
* clang lto (the gold linker plugin that allows same to work)
* libcxx/libcxxabi
* libopenmp, also setting the default openmp runtime to same, when
  parameters happen this shoudl be an option of libomp or libgomp

Ideally, this should have rpath setup like the gcc package does, but
clang's driver has no support for specs as such, and no clearly
equivalent mechanism either.  If anyone has ideas on this, they would be
welcome.

One significant note related to gcc though, if you test this on LLNL
systems, or anywhere that has multiple GCCs straddling the dwarf2
boundary and sharing a libstdc++, build a gcc with spack and use that to
build clang.  If you use a gcc4.8+  to build this with an older
libstdc++ it will fail on missing unwind symbols because of the
discrepancy.

Resource handling has been changed slightly to move the unpacked archive
into the target rather than use symlinks, because symlinks break certain
kinds of relative paths, and orders resource staging such that nested
resources are unpacked after outer ones.
 2015-12-30 16:59:39 -08:00
Tom Scogland
fcdf08e4d7 allow nested resources 
This solution doesn't really make me happy, but does seem to work.  It
sorts the resources by the length of the string representing their
destination.  Since any nested resource must contain another resource's
name in its path, it seems that should work, but there should be a
better way to do this.
 2015-12-30 16:59:39 -08:00
Tom Scogland
cc8c783bb2 adding errno import for the deep directory creation patch 2015-12-30 16:59:39 -08:00
Tom Scogland
30f5ccb80d create leading directories for resources 
This allows resources to be placed into subdirectory trees that may not
exist in the base package, and may depend on other resources to be
staged later.
 2015-12-30 16:59:39 -08:00
Todd Gamblin
e8e6368cc8 Rework mirror configuration. 
- All of these work:
  - `spack mirror add`
  - `spack mirror remove`
  - `spack mirror list`

- `spack mirror` subcommands (except create) now have their own
  --scope argument.

- Mirror config is now stored sanely as an ordered list.
 2015-12-28 01:14:41 -08:00
Todd Gamblin
1f8ba53ca7 Rework compiler configuration and simplify config.py logic. 
- `spack compiler` subcommands now take an optional --scope argument.

- no more `remove_from_config` in `config.py` -- `update` just
  overwrites b/c it's easier to just call `get_config`, modify YAML
  structures directly, and then call `update`.

- Implemented `spack compiler remove`.
 2015-12-28 00:46:51 -08:00
Todd Gamblin
ff0d871612 Remove mock_configs; tests no longer modify spack home directory. 2015-12-27 21:13:18 -08:00
Todd Gamblin
39e360f93a Add custom YAML loader & dumper to track lines & maintain dict order. 
- Configs are now parsed with `spack.util.spack_yaml.load/dump`

- Parser annotates returned data with `_start_mark` and `_end_mark`
  properties, so that we can recover what lines/files they came from.

- Parser uses `OrderedDict` instead of `dict`.  This will help
  maintain some sanity when round-tripping config files.
 2015-12-27 17:51:11 -08:00
Todd Gamblin
4e8e298eb3 Uncomment disabled tests. 2015-12-27 17:40:31 -08:00
Todd Gamblin
487ac9cd19 Merge pull request #277 from LLNL/bugfix/vcs-mirror-fetch 
Fix #85 and #228: errors fetching VCS packages from a mirror.
 2015-12-26 09:28:38 -08:00
Todd Gamblin
bef52570ae Default to scope with highest precedence instead of user scope, 
- Generalizes config scopes a bit more: nothing assumes there is a
  'user' scope (this would break testing sometimes).
 2015-12-25 18:42:06 -08:00
Todd Gamblin
c65fd3a289 Merge branch 'develop' into mplegendre-multi_pkgsrc_roots 
Conflicts:
	lib/spack/spack/cmd/create.py
	lib/spack/spack/cmd/extensions.py
	lib/spack/spack/cmd/fetch.py
	lib/spack/spack/cmd/uninstall.py
	lib/spack/spack/config.py
	lib/spack/spack/database.py
	lib/spack/spack/directory_layout.py
	lib/spack/spack/packages.py
	lib/spack/spack/spec.py
 2015-12-25 16:35:55 -08:00
Todd Gamblin
34401cf0c3 Rework Spack config: keep user & site config in memory. 
- User and site config are now kept separately in memory.
- Merging is done on demand when client code requests the configuration.
- Allows user/site config to be updated independently of each other by commands.
- simplifies config logic (no more tracking merged files)
 2015-12-25 14:00:33 -08:00
Todd Gamblin
52625de52c Fix #154 -- better log messages for do_patch() 2015-12-24 11:37:40 -08:00
Todd Gamblin
f37f872e5f Fix #85 and #228: errors fetching VCS packages from a mirror. 
- Stage and fetcher were not being set up properly when fetching using
  a different fetch strategy than the default one for the package.

- This is fixed but fetch/stage/mirror logic is still too complicated
  and long-term needs a rethink.

- Spack will now print a warning when fetching a checksum-less tarball
  from a mirror -- users should be careful to use https or local
  filesystem mirrors for this.
 2015-12-23 16:23:58 -08:00
Todd Gamblin
5ca5884ad6 Fix #235: Smarter web spidering -- use parsed links instead of reconstructing. 
- Move `find_versions_of_archive` from spack.package to `spack.util.web`.

- `spider` funciton now just uses the link parsing it already does to
  return links.  We evaluate actual links found in the scraped pages
  instead of trying to reconstruct them naively.

- Add `spack url-parse` command, which you can use to show how Spack
  interprets the name and version in a URL.
 2015-12-23 13:16:57 -08:00
Todd Gamblin
d63cb8b537 Fix bug in URL regex. 2015-12-22 17:05:23 -08:00
Todd Gamblin
0d4b77a24b revert accidental print statements. 2015-12-22 17:02:14 -08:00
Todd Gamblin
2b89d9b1db More consistent URL parsing when finding versions. 
Versions found by wildcard URLs are different from versions found by
parse_version, etc.  The wildcards are constructed more haphazardly
than the very specific URL patterns in url.py, so they can get things
wrong.  e.g., for this URL:

    https://software.lanl.gov/MeshTools/trac/attachment/wiki/WikiStart/mstk-2.25rc1.tgz

We miss the 'rc' and only return 2.25r as the version if we ONLY use
URL wildcards.

Future: Maybe use the regexes from url.py to scrape web pages, and
then compare them for similarity with the original URL, instead of
trying to make a structured wildcard URL pattern?  This might yield
better results.
 2015-12-22 16:59:00 -08:00
Erik Schnetter
9017ec5865 Merge branch 'develop' into correct-cc 2015-12-22 15:49:43 -05:00
Erik Schnetter
3427174eb0 Correct quoting 2015-12-22 15:49:14 -05:00
Todd Gamblin
b1d40efd99 Merge pull request #261 from LLNL/features/prefer-versions-in-packages 
Add ability to prefer particular versions in packages.
 2015-12-22 08:25:52 -08:00
Todd Gamblin
157e42de22 Merge pull request #264 from nolta/typos 
fix a few comment typos
 2015-12-22 07:56:54 -08:00
Todd Gamblin
792b033255 Slightly more robust tmp directory search. 
- remove getcwd() check (seems arbitrary -- if users set their TMPDIR
  to this why stop them?)

- try a number of common locations and try per-user directories in
  them first.
 2015-12-22 07:54:25 -08:00
Mike Nolta
61f07b0c4d fix a few comment typos 2015-12-21 19:24:16 -05:00
Mike Nolta
2ba6bb21fb fix #249 (tmp spack-stage directories conflict) 2015-12-21 18:50:58 -05:00
Todd Gamblin
fe0fdf60b4 Add ability to prefer particular versions in packages. 
- Adding `preferred=True` to a version directive will change its sort
  order in concretization.

- This provides us a rudimentary ability to keep the Spack stack
  stable as new versions are added.

- Having multiple stacks will come next, but this at least allows us
  to specify default versions of things instead of always taking the
  newest.
 2015-12-21 15:35:47 -08:00
Todd Gamblin
73ea15db8e Merge pull request #208 from epfl-scitas/features/resource_directive 
resource directive : implementation + clang / llvm use case
 2015-12-21 10:34:16 -08:00
Erik Schnetter
611537eaed Merge branch 'develop' into correct-cc 2015-12-21 13:18:35 -05:00
Erik Schnetter
ba22fc8b78 Simplify Spack cc script 2015-12-21 10:21:33 -05:00
Todd Gamblin
dccfcd10f7 Merge pull request #255 from LLNL/bugfix/254-libtool-compiler-name-issues 
Fix #254: libtool & distutils want certain compiler names.
 2015-12-20 16:56:59 -08:00
Todd Gamblin
1b086c928c Merge pull request #227 from trws/fetch-deps 
fetch: add options to fetch missing or all deps
 2015-12-19 21:02:42 -08:00
Todd Gamblin
9edba18489 Merge pull request #230 from nolta/fix-env-mod-sys-type 
fix environment module path when $SYS_TYPE isn't defined
 2015-12-19 20:59:13 -08:00
Todd Gamblin
32f96b5c73 Fix stale code in python version test so that it actually works. 2015-12-19 20:04:00 -08:00
Mike Nolta
429e15c4a6 spack python: add -c option 
Allows passing program in as a string. Example:

    $ spack python -c 'print 2+3'
    5

Also imports spack module by default into the environment.
 2015-12-19 16:32:17 -05:00
Gregory Lee
df5dc1c9bb Merge pull request #253 from LLNL/bugfix/244-uninstall-errors 
Bugfix/244 uninstall errors
 2015-12-19 08:06:36 -08:00
Todd Gamblin
7cc4d88726 Fix #254: libtool & distutils want certain compiler names. 
This changes the compiler wrappers so that they are called by the same
name as the wrapped compiler.  Many builds make assumptions about
compiler names, and we need the spack compilers to be recognizable so
that build systems will get their flags right.

This adds per-compiler subdirectories to lib/spack/spack/env directory
that contain symlinks to cc for the C, C++, F77, and F90
compilers. The build now sets CC, CXX, F77, and F90 to point to these
links instead of to the generically named cc, c++, f77, and f90
wrappers.
 2015-12-19 02:06:47 -08:00
Todd Gamblin
52e3364efa Fix #244: errors on uninstall 
- Extension logic didn't take conditional deps into account.

- Extension methods now check for whether the extnesion is
  in the extendee map AND whether the dependency is actually present
  in the spec yet.
 2015-12-18 22:24:35 -08:00
Todd Gamblin
b7e926eef6 minor formatting. 2015-12-18 22:24:22 -08:00
Todd Gamblin
ce8bd20944 Fix import error. 2015-12-18 22:23:51 -08:00
Todd Gamblin
abd3d3946d Format to 80 char width. 2015-12-18 19:23:45 -08:00
Gregory Becker
217a2d9ea5 fixed yaml error 2015-12-17 15:26:27 -08:00
Erik Schnetter
5d61888657 Correct Spack cc script 2015-12-17 10:13:39 -05:00
Gregory Lee
9cab88071b Merge pull request #239 from LLNL/bugfix/238-db-specs-not-concrete 
Fix #238: Database specs need to be concrete when read in as well.
 2015-12-16 11:37:51 -08:00
Mike Nolta
82aa366adf minor comment tweak in modules.py 2015-12-16 11:43:07 -05:00
Todd Gamblin
2f9ee88408 Fix #238: Database specs need to be concrete when read in as well. 2015-12-15 17:15:37 -08:00
Todd Gamblin
6e074a196a Fix #206: need to make deps AND root concrete when read in. 2015-12-14 21:06:32 -08:00
Todd Gamblin
afbd0e77d0 Make internal hash dep sort order match external one. 2015-12-11 16:47:34 -08:00
Todd Gamblin
3dd6cbc556 Fix #217: update spec_dag test for new _cmp_key. 2015-12-11 13:07:20 -08:00
Todd Gamblin
6ee2eb21dd Fix #217: Use MUCH faster hashing, reduce number of DAG copies. 
This changes the hash algorithm so that it does much less object
allocation and copying, and so that it is correct.

The old version of `_cmp_key()` would call `sorted_deps`, which would
call `flat_dependencies` to get a list of dependencies so that it
could sort them in alphabetical order.  This isn't necessary in the
`_cmp_key()`, and in fact we want more DAG structure than that to be
included in the `_cmp_key()`.

The new version constructs a tuple without copying the Spec DAG, and
the tuple contains hashes of sub-DAGs that are computed recursively
in-place.  This is way faster than the previous algorithm and reduces
the numebr of copies significantly. It is also a correct DAG hash.

Example timing and copy counts for the different hashing algorithms
we've tried:

Original (wrong) Spec hash:
```
106,170 copies
real    0m5.024s
user    0m4.949s
sys     0m0.104s
```

Spec hash using YAML `dag_hash()`:
```
3,794 copies
real    0m5.024s
user    0m4.949s
sys     0m0.104s

New no-copy, no-YAML hash:
```
3,594 copies
real    0m2.543s
user    0m2.435s
sys     0m0.104s
```

So now we have a hash that is correct AND faster.

The remaining ~3k copies happen mostly during concretization, and as
all packages are initially loaded.  I believe this is because Spack
currently has to load all packages to figure out virtual dependency
information; it could also be becasue there ar a lot of lookups of
partial specs in concretize.  I can investigate this further.
 2015-12-11 12:40:27 -08:00
Mario Melara
b5216f6ec8 Commented out cxxflag. Not 100% sure it's needed 2015-12-11 12:07:32 -08:00
Mario Melara
31df2dd9dd Fixed targets ti be x86_64, important note: have not tested this on linux machine 2015-12-11 12:04:47 -08:00
Mario Melara
fee88d289d Rewrote docstrings for sys_type() and got rid of unused functions 2015-12-11 12:03:13 -08:00
Todd Gamblin
7526a89463 Fix #217: Make package cache use DAG hash instead of sorted deps. 
- Gets rid of last vestige of old-style specs.
- Uses new hashing for lookup
 2015-12-11 02:17:17 -08:00
Tom Scogland
281a869ef6 fix path resolution for mirror packages, especially with dependency fetching 2015-12-10 09:24:01 -08:00
Tom Scogland
786f4cd2c2 add dependency fetching to mirror creation 2015-12-10 08:32:51 -08:00
Tom Scogland
25f2b01a3c fetch: add options to fetch missing or all deps 
Small additions to fetch to make it easier to fetch all files necessary for a
build on a system without network connectivity.
 2015-12-10 07:27:06 -08:00
alalazo
20e67bc5e6 clang : solve the issue with missing default include paths for OpenMP and libc++ 
resource : support for finer grained linking of resources
 2015-12-09 17:15:26 +01:00
Todd Gamblin
537451f0b1 bugfix: doc build needed additional sys.path due to externals change. 2015-12-09 01:32:12 -08:00
Todd Gamblin
c41b9b7ddc Change github.com/scalability-llnl to github.com/llnl everywhere. 2015-12-09 01:24:15 -08:00
Peter Scheibel
530e049d4a Added nose 1.3.7 source along with with the lgpl license (renamed from lgpl.txt 
to LICENSE)
 2015-12-04 17:55:20 -08:00
Massimiliano Culpo
50bd4d2e4e mirror : deals correctly with variants that optionally enable resources (if they are archive URLs) 2015-12-03 11:21:11 +01:00
Mario Melara
028cca16e6 Got rid of the unusued default strategy=None 2015-12-02 10:15:33 -08:00
Massimiliano Culpo
39a3cfd4d9 reource directive accepts 'basename' keyword 
llvm : libc++ variant
 2015-12-02 12:24:37 +01:00
Massimiliano Culpo
4b2168ab8e resources : added missing check after fetch 2015-12-02 10:13:39 +01:00
Mario Melara
d7fdb8e015 Got rid of hard coded strings for adding default 2015-12-01 11:57:54 -08:00
Mario Melara
58f2b39bc8 Changed default to CPU_TARGET env var. Helps deal with target differences between cori and edison 2015-12-01 11:57:17 -08:00
Mario Melara
89fbe4fdfa Changed add_target to include variables rather than hard-coded strings 2015-12-01 11:55:38 -08:00
Massimiliano Culpo
b85dccca92 resources : added error handling for destination keyword on resource directive 2015-12-01 15:12:26 +01:00
Massimiliano Culpo
d3d9b5401b resources : changed name of stage folder 2015-12-01 13:26:44 +01:00
Massimiliano Culpo
a075d581ef resource : fetch strategy constructed from kwargs instead or hardcoded URLFetchStrategy 2015-12-01 12:56:46 +01:00
Todd Gamblin
dfcf567de0 Add a cleaned up repo command. 2015-11-28 19:00:24 -08:00
Todd Gamblin
73ef06018e Integrate namespace attribute into spec, spec DAG, spec YAML. 2015-11-28 16:26:23 -08:00
Todd Gamblin
7383bd393e Fixed bug #42: problem with satisfies() for virtual dependencies. 
- _cross_provider_maps() had suffered some bit rot (map returned was
  ill-formed but still worked for cases with one vdep)

- ProviderIndex.satisfies() was only checking whether the result map
  was non-empty.  It should check whether all common vdeps are *in*
  the result map, as that indicates there is *some* way to satisfy
  *all* of them.  We were checking whether there was some way to
  satisfy *any one* of them, which is wrong.

- Above would cause a problem when there is more than one vdep provider.

- Added test that covers this case.

- Added `constrained()` method to Spec. Analogous to `normalized()`:
  `constrain():constrained() :: normalize():normalized()`
 2015-11-27 23:06:18 -08:00
Todd Gamblin
763d850a0e Add tests for importing packages directly. 
Added test for, e.g.:

    import spack.pkg.builtin.mock.mpich
    import spack.pkg.builtin.mock.mpich as mpich
    from spack.pkg.builtin.mock.mpich import Mpich

Among others.  These ensure that direct package imports work so that
packages can be extended.
 2015-11-26 14:23:12 -08:00
Todd Gamblin
89d5127900 New, cleaner package repository structure. 
Package repositories now look like this:

    top-level-dir/
        repo.yaml
        packages/
            libelf/
                package.py
            mpich/
                package.py
            ...

This leaves room at the top level for additional metadata, source,
per-repo configs, indexes, etc., and it makes it easy to see that
something is a spack repo (just look for repo.yaml and packages).
 2015-11-26 14:19:27 -08:00
Massimiliano Culpo
1fe626ec7c resource directive : sketch of implementation + clang / llvm use case 2015-11-26 17:53:33 +01:00
Peter Scheibel
fc96f62794 Updated documentation/naming in tally_plugin to reflect that the count of the 
total number of tests run excludes skipped tests
 2015-11-25 18:08:17 -08:00
Peter Scheibel
d50a18d9eb XML output for unit tests is now enabled with an option (disabled by default) 2015-11-25 17:10:45 -08:00
Peter Scheibel
60f7756626 Executable.__call__ original semantics were to avoid redirecting process output 
to the output stream if return_output was set. This branch undid that and this
commit restores those semantics.
 2015-11-25 12:28:43 -08:00
Todd Gamblin
04f032d6e3 Rename spack.db -> spack.repo 
Making distinction between install database and package repositories clearer.
 2015-11-25 10:01:44 -08:00
Todd Gamblin
e6d232bfef Rename packages.py to repository.py, PackageFinder to RepoPath. 2015-11-25 09:58:10 -08:00