Commit graph

16190 commits

Author SHA1 Message Date
Adam J. Stewart
8b4b7aacbb
py-pandas: add 1.0.X release (#16366) 2020-04-28 23:14:17 -05:00
Ryan Mast
25c17e0ca6
helics: Add version 2.5.0 (#16364)
Add HELICS package version 2.5.0
2020-04-28 19:21:22 -05:00
Hadrien G
2d02769bea
[dd4hep] Fix inappropriate patch line break (#16361)
Sometimes, text editors automate things a little too much...
2020-04-28 19:17:13 -05:00
Jeffrey Salmond
703111c01b
Add amgx (#16357)
* add amgx package

* add amgx variants for mkl and magma support

* fix typo in cmake option

* flake8 fix formatting

* Apply suggestions from code review - use mkl virtual provider

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Apply suggestions from code review - fix copypasta

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-28 14:36:55 -05:00
Axel Huebl
00d83cd79d
dev-build: stop before phase (#14699)
Add `-b,--before` option to dev-build command to stop before the phase in question.
2020-04-28 09:55:57 -07:00
Axel Huebl
7670ae468f
Docs: Limit Microarch on Travis CI (#16200)
Update the travis CI docs: limiting the microarch is essential
for caching.
2020-04-28 11:54:02 -05:00
Carson Woods
6e63ff1688
netcdf-fortran: add new variants (#16046)
* Add additional variants to netcdf-fortran

* Fix duplicate variant

* Clean up variants based on review feedback

* Addtional variant changes

* Convert jna variant to single line

* Fix proper version constraints for jna variant
2020-04-28 11:15:19 -05:00
Stephen McDowell
4ed5cee940
jsoncpp add 1.9.2, patch %clang@10 for implicit conversion (#16153)
* add 1.9.2, patch %clang@10 for implicit conversion

* flake8: "fix" hanging indent (squash: because is that really more readable?)
2020-04-28 11:14:36 -05:00
darmac
af9c3b31de
Add new package: figlet (#16355) 2020-04-28 11:12:50 -05:00
Cameron Smith
d3ffb12274
kokkos: add versions 3.0.00 and 3.1.00 (#16354) 2020-04-28 11:11:50 -05:00
darmac
48de131b08
bazel: support for aarch64 platform (#16350) 2020-04-28 11:07:46 -05:00
darmac
a1e03151b2
Add new package: etcd (#16348) 2020-04-28 11:07:02 -05:00
darmac
2f88af4d2c
Add new package: kubernetes (#16347) 2020-04-28 11:06:24 -05:00
Jeffrey Salmond
4aed5daeba
adjust petsc to build cuda only when requested explicitly (#16275)
* adjust petsc+cuda to build cuda only when requested explicitly

* activate petsc library support only when explicitly requested

* flake8 fixes
2020-04-28 10:52:39 -05:00
Carson Woods
27b7d4bd21
openmpi: add additional variants (#16044)
* Add variants to OpenMPI

* Add variant for toggling runpath

* Fix typo

* Remove blank line whitespace
2020-04-28 10:51:30 -05:00
Tom Payerle
aec3589679
netcdf-c: Patch to support hdf linked against libtirpc (#15994)
If hdf was built with +libtirpc, we need to add -ltirpc to our link
flags.
2020-04-28 09:43:53 -05:00
Massimiliano Culpo
50318e4ee3
travis: extend the list of e-mails being notified of failures (#16352) 2020-04-28 14:55:44 +02:00
Massimiliano Culpo
a540e36922
relocate: remove an assertion in _make_relative (#16351)
This was an oversight in #15654 since `os.path.isfile`
checks that the something is a file in the current
filesystem.
2020-04-28 14:53:22 +02:00
Christoph Junghans
9615ac42cf
votca-*: fix stable deps (#16339) 2020-04-28 13:08:00 +02:00
darmac
cf31472e5a
cassandra: added v3.11.6 and dependency on Java (#16341) 2020-04-28 13:04:31 +02:00
darmac
76e9171d25
colordiff: modified url to fix 404 error (#16349) 2020-04-28 10:59:52 +02:00
Christoph Junghans
fcbf0545c7
votca-*: add stable version (#16336)
* votca-*: add stable version

* votca-*: add myself as maintainer
2020-04-27 20:43:34 -05:00
Tiziano Müller
3115b5c758
CP2K: arch file improvements and blas-dependency simplification (#16074)
* cp2k: prettify arch-file, call pkg-config directly

this allows to re-use the arch-file without having to load the complete
Spack environment, for example after a dev-build

* cp2k: use consistency check instead of blas lib enum

this makes using other BLAS/LAPACK implementations possible without
explicitly adding support for them

* cp2k: add basic support for Cray and XL Compilers, correct Intel fp mode

* cp2k: add myself as maintainer

* cp2k: use "master" to denote the git version

* cp2k: use spack_cc/fc/cxx when possible, set CXX explicitly

* cp2k: set __MKL when using the MKL, not just the Intel compiler

* cp2k: drop self. when referencing spec where possible

* cp2k: add forgotten elpa+openmp dep

* cp2k: set C++14 for recent versions
2020-04-27 19:42:33 -05:00
Dr. Christian Tacke
f5a5a11c77
abseil-cpp: new Version, Build Shared Library (#16125)
* Add new version: "Abseil LTS branch, Feb 2020, Patch 1"
* Build shared libraries by default with new version
* Older versions do not support building shared libraries
2020-04-27 19:41:15 -05:00
Diego Magdaleno
f1a7fb2ffc
Update bat and make the url dynamic (#16127)
* Update bat and make the url dynamic

- Now depending on the version it will calculate
the url

- This also fixes a weird issue that was reported
on Darwin, back when I reported that Rust wasn't
linking properly on Darwin #15887 on the comment
by hartzell i was also experiencing this issue

* Remove unnecessary stuff

- Removes the need for LLVM

- Removes the need for version calculation.

* Keep the versions on 1 line

* Pass flake8 tests
2020-04-27 19:40:35 -05:00
Diego Magdaleno
cd56882998
Add a new package Exa (#16126)
* Add new package exa

* Format and fix a silly typo

* Fix SHA256 SUM and make URL calculation dynamic

* Remove unnecessary URL calculation

* Update package.py

* Keep the version on 1 line

* Pass flake8 checks
2020-04-27 19:39:09 -05:00
asmaahassan90
b04b6e1449
Add ShengBTE (#16154)
* Add ShengBTE

Adding a new package; ShengBTE. I tried adding it a MakefilePackage, and use build_directory = 'Src', but it was as if the build_directory gets ignored and make complains about target not found. and using the make funtion here instead of os.system, I get errors that config.f90 is not found which is already available under Src as well.

* more enhancmenets

fix lint; use mkl spec; use build_directory variable

* one more fix

* Use Makefile template

* Update var/spack/repos/builtin/packages/shengbte/package.py

use mkl instead of intel-mkl as a dependency

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/shengbte/package.py

update recipe as suggested by reviewer

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* enhance recipe

remove white space; changes as suggested by reviewer

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-27 19:38:15 -05:00
Joseph Ciurej
f314ff6639
python : fix SSL for older Python versions (#16217)
* Fixed SSL pathing for older versions of Python (i.e. @:3.6.999).

* Fixed an issue where the 'python~ssl' variant wasn't properly being respected.

* Improved the '~ssl' patch by making it functional instead of diff-based (enables 3.X.Y patches).

* Fixed comment formatting to satisfy 'flake8' style requirements.
2020-04-27 19:36:33 -05:00
Tim Haines
204179eed3
elfutils: Add version 0.179 (#16334) 2020-04-27 19:26:28 -05:00
Christoph Junghans
8060bc6523
graphviz: add poppler support (#16331)
* graphviz: add poppler support

* graphviz: actually needs poppler+glib

* poopler: fix glib build, new version
2020-04-27 15:18:03 -06:00
Mark W. Krentel
08e53b67f8
hpcviewer: add version 2020.04 (#16332)
* hpcviewer: add version 2020.04

* ibm-java: add version 8.0.6.7
2020-04-27 16:04:02 -05:00
Brian Van Essen
a4b17b9503
cuDNN: Help dependents find libs/includes on Power arch (#16128)
On Power architectures cuDNN will install in a target directory. This
sets cuDNN_ROOT to point to the subdirectory to help dependents use
this install.
2020-04-27 13:15:46 -07:00
Amjad Kotobi
1c45153e00
ecflow added version 4.12.0 (#16327) 2020-04-27 13:19:41 -05:00
Amjad Kotobi
31eff3578f
cmake added version 3.17.1 (#16326) 2020-04-27 13:19:10 -05:00
Benjamin Tovar
505a511af4
update cctools to version 7.1.3 (#16324) 2020-04-27 13:18:44 -05:00
iarspider
a277b96b39
Make mariadb provide mysql-client... (#16322)
... as well as mariadb. Needed for ROOT.
2020-04-27 11:01:48 -05:00
vvolkl
77812845b8
update podio version formatting (#16321)
* update podio version formatting

* [podio] formatting fixes
2020-04-27 11:01:09 -05:00
vvolkl
eda886f627
[dd4hep] url and other fixes (#16320) 2020-04-27 11:00:10 -05:00
Toyohisa Kameyama
d59f7398a3
MODYLAS: New package (#16317) 2020-04-27 10:57:14 -05:00
darmac
5938499be7
Add new package: stinger (#16316) 2020-04-27 10:55:07 -05:00
darmac
81b5475f8e
Add new package: smartdenovo (#16310) 2020-04-27 09:55:35 -05:00
Massimiliano Culpo
fe46919e19
tulip: added new package at v5.4.0 (#16319)
closes #3479

Co-authored-by: Kate Isaacs <kisaacs@cs.arizona.edu>

Co-authored-by: Kate Isaacs <kisaacs@cs.arizona.edu>
2020-04-27 09:54:49 -05:00
George Hartzell
3f54e73025
singularity: better info re post-install step (#16311)
The singularity info should actually suggest where you might find the info about the post-install steps.

Co-authored-by: george.hartzell <george.hartzell@sana.com>
2020-04-27 13:41:04 +02:00
Toyohisa Kameyama
0477f829a2
xabclib: added package at v1.03 (#16271) 2020-04-27 13:33:28 +02:00
asmaahassan90
35717b556b
spglib: added libs property (#16318) 2020-04-27 13:26:10 +02:00
Christoph Junghans
3ea21fef4b
votca-csg: Block gromacs@2020 and newer (#16315) 2020-04-27 04:57:26 -06:00
Massimiliano Culpo
6b648c6e89
Improve the coverage of spack.relocate (#15654)
This PR introduces trivial refactoring in:
- `get_existing_elf_rpaths`
- `get_relative_elf_rpaths`
- `get_normalized_elf_rpaths`
- `set_placeholder`

mainly to be more consistent with practices used in other 
parts of the code and to simplify functions locally. It also 
adds or reworks unit tests for these functions and extends 
their docstrings.

Co-authored-by: Patrick Gartung <gartung@fnal.gov>
Co-authored-by: Peter J. Scheibel <scheibel1@llnl.gov>
2020-04-27 12:17:32 +02:00
Toyohisa Kameyama
ca4de491ba
ppOpen-APPL/AMR-FDM: New package (#16199)
* ppOpen-APPL/AMR-FDM: New package

* separate build and install.

* Fix description.
2020-04-26 22:09:06 -05:00
Axel Huebl
4f3cc19ec7
qt: fix macOS w/ AppleClang (mesa libs) (#16302)
Building the `py-jupyter` stack on macOS with AppleClang breaks on
the `py-qtconsole` -> `py-qtconsole` -> `qt +opengl` package build
environment setup with:
```
 ==> Error: AttributeError: Query of package 'mesa' for 'libs' failed
 ...
 ==> Error: Failed to install qt due to ChildError: AttributeError: Query of package 'mesa' for 'libs' failed
```

This tries to add more library targets build by `mesa` to avoid this.
2020-04-26 17:07:13 -07:00
Axel Huebl
199ce66a3c
libpciaccess: mirror (#16312)
Support mirrors for libpciaccess downloads.
2020-04-26 17:06:37 -07:00