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Author SHA1 Message Date
Seth R. Johnson
52a737affe Use correct GCC installation when installing clang with GCC (#12381) 2019-08-11 12:40:12 -05:00
Sinan
5532b8e617 new package: qwtpolar (#12382) 
* create qwtpolar package

* patch config files so that qwtpolar successfully builds

* make flake8 happy
 2019-08-11 12:39:58 -05:00
Frédéric Simonis
33bec18cc2 Add preCICE xSDK support (#12356) 
* Add preCICE xSDK support

* Cleanup generation of cmake arguments

* Generalize numpy include

* Fix python spec

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Fix numpy spec

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-08-11 12:19:44 -05:00
Adam J. Stewart
0d4114b095
Add NCCL 2.4.8-1 (#12362) 2019-08-10 11:53:29 -05:00
Adam J. Stewart
c5c1d1db43
Port py-poster to Python 3 (#12363) 
* Port py-poster to Python 3

* Forgot the patch
 2019-08-10 11:53:15 -05:00
Adam J. Stewart
e69456bde2
Add py-clipboard package (#12364) 2019-08-10 11:52:52 -05:00
Adam J. Stewart
6e14e74014
Add py-gee-asset-manager package (#12365) 2019-08-10 11:52:38 -05:00
Adam J. Stewart
889b625452
Add py-geeadd package (#12366) 2019-08-10 11:52:24 -05:00
Adam J. Stewart
8e4d60645f
Add py-geeup package (#12367) 2019-08-10 11:52:10 -05:00
Adam J. Stewart
706d57bd23
Add py-google-api-core package (#12368) 2019-08-10 11:51:56 -05:00
Adam J. Stewart
09e0f1ad4e
Add py-google-cloud-core package (#12369) 2019-08-10 11:51:41 -05:00
Adam J. Stewart
3c54e55546
Add py-google-cloud-storage package (#12370) 2019-08-10 11:51:27 -05:00
Adam J. Stewart
a3cc7eb4f7
Add py-google-resumable-media package (#12371) 2019-08-10 11:51:12 -05:00
Adam J. Stewart
b329d5f27f
Add py-googleapis-common-protos package (#12372) 2019-08-10 11:50:58 -05:00
Adam J. Stewart
fbf386328c
Add py-oauth2client package (#12373) 2019-08-10 11:50:43 -05:00
Adam J. Stewart
1d0f61816a
Add py-pathlib package (#12374) 2019-08-10 11:50:24 -05:00
Adam J. Stewart
37e59cbd7e
Add py-pyperclip package (#12375) 2019-08-10 11:50:10 -05:00
Adam J. Stewart
572bc5cc77
Add py-pysmartdl package (#12376) 2019-08-10 11:49:55 -05:00
Adam J. Stewart
3601f1c825
Add py-retrying package (#12377) 2019-08-10 11:49:41 -05:00
Adam J. Stewart
25b3946e0b
Add py-selenium package (#12378) 2019-08-10 11:49:25 -05:00
Sajid Ali
48016366c8 modified: var/spack/repos/builtin/packages/libflame/package.py (#12379) 2019-08-10 11:48:58 -05:00
Cameron Smith
a4a30de8a1 libconfig: add version 1.7.1 (#12324) 
* libconfig: add version 1.7.1

* move 1.7.1 above 1.6, latest version is preferred
 2019-08-10 11:08:53 -05:00
Seth R. Johnson
54018b488a Fix build for moab 4.9.2 on gcc8 (#12328) 
```
5 errors found in build log:
     609      CXX      mbpart.o
     610      CXX      quality.o
     611      CXX      umr.o
     612      CXX      merge.o
     613      CXX      parread.o
     614    mbpart.cpp: In function 'int main(int, char**)':
  >> 615    mbpart.cpp:494:19: error: no match for 'operator<<' (operand types
            are 'std::ostream' {aka 'std::basic_ostream<char>'} and 'std::ostri
            ngstream' {aka 'std::__cxx11::basic_ostringstream<char>'})
     616             std::cerr << tmp_output_file << " : failed to write file."
             << std::endl;
     617             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
     618    mbpart.cpp:494:19: note: candidate: 'operator<<(int, int)' <built-i
            n>
     619    mbpart.cpp:494:19: note:   no known conversion for argument 2 from
            'std::ostringstream' {aka 'std::__cxx11::basic_ostringstream<char>'
            } to 'int'
     620    In file included from /software/user_tools/centos-7.2.1511/cades-ns
            ed-spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbum
            ioobdbkw4rwfyn2givi4nyvwq/include/c++/8.2.0/iterator:64,
     621                     from /software/user_tools/centos-7.2.1511/cades-ns
            ed-spack/var/spack/stage/moab-4.9.2-77uuzmj4ofb7z7vz6m25sftyks7p5do
            7/spack-src/src/moab/Range.hpp:167,

     ...

     886    /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
            ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
            vwq/include/c++/8.2.0/ostream:682:5: note: candidate: 'template<cla
            ss _Ostream, class _Tp> typename std::enable_if<std::__and_<std::__
            not_<std::is_lvalue_reference<_Tp> >, std::__is_convertible_to_basi
            c_ostream<_Ostream>, std::__is_insertable<typename std::__is_conver
            tible_to_basic_ostream<_Tp>::__ostream_type, const _Tp&, void> >::v
            alue, typename std::__is_convertible_to_basic_ostream<_Tp>::__ostre
            am_type>::type std::operator<<(_Ostream&&, const _Tp&)'
     887         operator<<(_Ostream&& __os, const _Tp& __x)
     888         ^~~~~~~~
     889    /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
            ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
            vwq/include/c++/8.2.0/ostream:682:5: note:   template argument dedu
            ction/substitution failed:
     890    /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
            ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
            vwq/include/c++/8.2.0/ostream: In substitution of 'template<class _
            Ostream, class _Tp> typename std::enable_if<std::__and_<std::__not_
            <std::is_lvalue_reference<_Tp> >, std::__is_convertible_to_basic_os
            tream<_Ostream>, std::__is_insertable<typename std::__is_convertibl
            e_to_basic_ostream<_Tp>::__ostream_type, const _Tp&, void> >::value
            , typename std::__is_convertible_to_basic_ostream<_Tp>::__ostream_t
            ype>::type std::operator<<(_Ostream&&, const _Tp&) [with _Ostream =
             std::basic_ostream<char>&; _Tp = std::__cxx11::basic_ostringstream
            <char>]':
     891    mbpart.cpp:494:22:   required from here
  >> 892    /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
            ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
            vwq/include/c++/8.2.0/ostream:682:5: error: no type named 'type' in
             'struct std::enable_if<false, std::basic_ostream<char>&>'
     893      CXXLD    mbdepth
     894      CXXLD    hexmodops
  >> 895    make[2]: *** [mbpart.o] Error 1
     896    make[2]: *** Waiting for unfinished jobs....
     897    make[2]: Leaving directory `/localscratch/tmp/s3j-spack/spack-stage
            /spack-stage-NT13kT/spack-src/tools'
  >> 898    make[1]: *** [all-recursive] Error 1
     899    make[1]: Leaving directory `/localscratch/tmp/s3j-spack/spack-stage
            /spack-stage-NT13kT/spack-src/tools'
  >> 900    make: *** [all-recursive] Error 1
```
 2019-08-10 11:08:13 -05:00
Adam J. Stewart
f9e6f0fb62
py-numexpr: switch from PyPI to GitHub download (#12360) 2019-08-09 22:27:34 -05:00
Ricardo Silva
c5849ce04f gromacs: fix CPU optimizations detection (simd=auto) (#12354) 
* SL-637
* https://redmine.gromacs.org/issues/2927
* tested with cmake 3.14.4 and 3.15.1
 2019-08-09 21:38:16 -05:00
Russell J. Hewett
7cc57d74e4 Updated Blaze version 3.5 and added access to master branch (#12341) 
* blaze: added version 3.5

* blaze: added access to bleeding edge
 2019-08-09 21:32:54 -05:00
Cameron Stanavige
13112d6b1c flatcc: add version 0.5.3 (#12358) 
This updates the flatcc package to have the latest version.
 2019-08-09 21:32:10 -05:00
Geoffrey Oxberry
28ffc1a4b9 gnome-common: new package (#12359) 2019-08-09 21:31:47 -05:00
Geoffrey Oxberry
92c65f3150 Add new package: libfive@master (#12334) 2019-08-09 18:10:00 -05:00
Toyohisa Kameyama
b54576abaf sdl2: fix dependency for libxext and build on ARM (#12351) 
1. add dependency for libxext2.
2. SSEMATH is off is aarch64.
3. reformat comment for flake8.
 2019-08-09 10:24:16 -05:00
Sean McGrath
74fe729be2 New Plink beta version (#12352) 
* Plink 1.9 Beta 6.10 added

* Typo Fix
 2019-08-09 10:22:18 -05:00
Sinan
a999092a93 newpackage/tippecanoe (#12319) 
* newpackage/tippecanoe

* make flake8 happy

* add "r" for raw text
 2019-08-09 10:18:26 -05:00
Geoffrey Oxberry
7b47178a53 bugfix: hunspell: add missing gettext dependency (#12347) 
* hunspell: write autoreconf method to triage error

This commit fixes the error described in GitHub issue
`AutotoolsPackage` class attempts to call `libtoolize`, which doesn't
exist on macOS systems that externally install `libtool` in Spack via
Homebrew -- Homebrew installzes GNU libtoolize as `glibtoolize`.

The fix is to call `autoreconf` only, and GitHub pull request #12344
makes this change in
AutotoolsPackage (https://github.com/spack/spack/pull/12344). However,
while waiting for that pull request to be merged, overriding the
`autoreconf` method achieves the same result for a self-contained
fix. This self-contained fix is necessary to fix a dependency bug in
the `hunspell` package.

* hunspell: add missing gettext dependency

* hunspell: add version 1.7.0
 2019-08-09 10:17:57 -05:00
Derick Huth
850b2ad42e Fixed broken iegenlib package (#12229) 
* Fixed broken iegenlib package

* [IEGenLib] fixed for style

* [IEGenLib] style fixes

* [IEGenLib] removed CMAKE_BUILD_TYPE option from config_args
 2019-08-09 10:14:17 -05:00
angel-devicente
e203068125 Added checksum for binutils@2.32 (#12350) 2019-08-08 23:56:41 -05:00
Greg Becker
be6ac6ce6d bugfix: nested matrices in spec lists (#12320) 
* stack concretization: fix handling of variant names with dashes
* spec_list: bugfix for handling nested matrices
 2019-08-08 20:53:31 -07:00
Geoffrey Oxberry
9336a8be38 enchant@2.2.5: new package (#12349) 2019-08-08 22:50:06 -05:00
Toyohisa Kameyama
14bdd56004 hisea: build on ARM. (#12302) 2019-08-08 22:45:23 -05:00
Marc-Andre Hermanns
606246572a Add new releases of Cube Tools, Opari2, OTF2, and Score-P (#12303) 2019-08-08 22:44:33 -05:00
Owen Solberg
178476d8c8 new package: Cromwell (#12309) 
* add new package cromwell

* fix flake8 errors, add cromwell-womtool package

* change name of cromwell to cromwell-server

* renamed cromwell-server to just cromwell

* update description to what is in the project docs

* fixing format call for python2.6 compatibility
 2019-08-08 22:39:00 -05:00
Sinan
d1e8ea302f new package: aria2 (#12318) 
* new package: aria2

* tidy up
 2019-08-08 22:36:13 -05:00
Cameron Smith
51adb6a4ef netcdf-cxx4: add m4 dep for call to autoreconf (#12325) 2019-08-08 22:29:42 -05:00
Geoffrey Oxberry
1a432fb213 guile: add versions 2.2.1 through 2.2.6 (#12333) 2019-08-08 22:22:17 -05:00
Adam J. Stewart
89af88aa02
Re-add py-cython dependency to py-tables (#12338) 2019-08-08 21:57:16 -05:00
Adam J. Stewart
b409283ad5
Add py-certifi 2019.6.16 (#12339) 2019-08-08 21:57:01 -05:00
Adam J. Stewart
44f4ad7bbf Allow Spack to uninstall external extensions without permissions (#11991) 
* Allow Spack to uninstall external extensions without permissions

Raise when self.projections is not empty
 2019-08-08 17:46:14 -07:00
Adam J. Stewart
0b4e13c034 openssl package: add versions including 1.1.1c (#12342) 
* Add comment that 1.0.1 versions are no longer supported
* Add comment that 1.0.2 versions are only supported up to
  December 2019
* Add versions 1.0.2s, 1.0.2r, and 1.0.2p
* Add versions 1.1.0k, 1.1.0j, and 1.1.0i
* Add version 1.1.1c
* Add comment that 1.1.0 versions are only supported up to
  September 2019
 2019-08-08 17:04:53 -07:00
Pariksheet Nanda
72bb7646fe docs: fix compiler config (#12330) 
It's no longer possible to set compiler flags under as an entry under
"paths" in compilers.yaml; instead the user must list these under the
"flags" section. This updates the docs accordingly.
 2019-08-08 16:47:24 -07:00
Adam J. Stewart
b4862be875 Fix typo in yaml config docs (#12312) 2019-08-08 10:56:11 +02:00
Greg Becker
36fbd6cf4c bugfix: spack stacks mixed dependency and non-dep constraints (#12315) 
Spack stacks drop invalid dependencies applied to packages by a
spec_list matrix operation

Without this fix, Spack would raise an error if orthogonal dependency
constraints and non-dependency constraints were applied to the same
package by a matrix and the dependency constraint was invalid for
that package. This is an error, fixed by this PR.

An example failing configuration:

spack:
  definitions:
  - packages: [libelf, hdf5+mpi]
  - compilers: ['%gcc']
  - mpis: [^openmpi]

  specs:
  - matrix:
    - $packages
    - $compilers
    - $mpis
 2019-08-07 18:34:41 -07:00