Commit graph

24358 commits

Author SHA1 Message Date
Robert Underwood
0611036abd
doxygen: add support for external detection (#20642) 2021-01-29 21:05:48 +01:00
Yang Zongze
f8124369f9
Print groups properly for spack find -d (#20028) 2021-01-29 11:05:36 -08:00
Peter Lindstrom
0f82fa5151
zfp: several package improvements (#21244)
- add variants for build targets, language bindings, backends
- ensure selected variants are compatible with zfp version
- point to GitHub (not LLNL) tar balls
- add dependencies
- update link to homepage
- add maintainers

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-01-29 17:51:30 +01:00
albestro
47c85059fb
it seems like there was a bug in the version of APEX that we set by default in 1.5.x (#21391) 2021-01-29 16:51:28 +01:00
a-saitoh-fj
9761c13878
dssp: added smoke tests (#21366) 2021-01-29 10:29:42 +01:00
Tomoyasu Nojiri
e3a0c48599
py-cheetah: restrict valid python interpreter to 2.7.X, add v2.4.4 (#21363) 2021-01-29 09:43:43 +01:00
Tomoyasu Nojiri
7b6c99655c
py-cheetah3: add new package at v3.2.6 (#21387) 2021-01-29 09:41:32 +01:00
Tomoyasu Nojiri
bc639fe60b
wtdbg2: enable build for aarch64 (#21390)
Use sse2neon to maintain the same API calls for aarch64
2021-01-29 09:37:00 +01:00
Tomoyasu Nojiri
b18479a2bd
swarm: add v3.0.0 (#21389) 2021-01-29 09:18:41 +01:00
Adam J. Stewart
519ba5590c
py-graphviz: add v0.8.4 (#21383) 2021-01-28 18:25:07 -08:00
Cyrus Harrison
57c23b964a
add new package: bloaty (#21355) 2021-01-28 16:44:07 -08:00
Dan Lipsa
5a9da90d07
Use utf8 for latex build. (#21360)
Patch provided by @Billae

Avoid the following error:
  File "/home/danlipsa/projects/spack/lib/spack/llnl/util/tty/log.py", line 768, in _writer_daemon
    line = _retry(in_pipe.readline)()
  File "/home/danlipsa/projects/spack/lib/spack/llnl/util/tty/log.py", line 830, in wrapped
    return function(*args, **kwargs)
  File "/usr/lib/python3.8/codecs.py", line 322, in decode
    (result, consumed) = self._buffer_decode(data, self.errors, final)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x97 in position 220: invalid start byte
2021-01-28 15:58:55 -05:00
Massimiliano Culpo
f523ea8c4e
perl: add v5.32.1 (#21375)
Make it such that BigSur is seen as 10.16 rather than 11.1, since the latter causes troubles with Perl configuration
2021-01-28 21:54:28 +01:00
Desmond Orton
b095dfb44b
New Package r-fpCompare@0.2.3 (#21380) 2021-01-28 14:29:57 -06:00
iarspider
f28026c040
pacparser: new package at v1.3.7 (#21372)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-01-28 20:42:53 +01:00
Adam J. Stewart
eeddaaea52
Make git fetching even quieter (for git v1.7.2+)(#21013) 2021-01-28 20:41:05 +01:00
Tomoyasu Nojiri
6ae8d5c380
openmx: Fix for aarch64 (#21367) 2021-01-28 10:20:18 -08:00
Ali Ahmed
b6d52fa466
New package: libpulsar (#21369) 2021-01-28 10:12:12 -08:00
Adam J. Stewart
aa15246280
py-matplotlib: add v3.3.4 (#21378) 2021-01-28 10:09:17 -08:00
bryanherman
ff8ef48806
New package: py-pytest-doctestplus (#21335)
* added package py-pytest-doctestplus

* setuptools required for run
2021-01-28 11:00:03 -06:00
bryanherman
ff0a92e6a8
New package: py-pytest-openfiles (#21339)
* added package py-pytest-openfiles

* remove wheel dep
2021-01-28 10:59:35 -06:00
bryanherman
bf33fe4805
openmc: add v0.11.0, v0.12.0 (#21349)
Also added new variants to fine tune the build
2021-01-28 17:04:34 +01:00
iarspider
9baecd0d78
umesimd: add new package (#21370) 2021-01-28 16:22:21 +01:00
Sergey Kosukhin
d577b6fcdf
autoconf: fix v2.70 and patching procedure of bin/autom4te.in (#21255)
This PR adds:

1.  A patch that fixes a bug in version 2.70 
    (will be fixed upstream in the next release: https://savannah.gnu.org/support/?110396).
2. A fix for the way we patch shebang in bin/autom4te.in. 

For 2, we need to keep the original modification timestamp of the file. 
Otherwise, we either get an empty man page for autom4te (versions 2.69 and before)
or a failure at the build time (versions 2.70 and after). 

The difference has to do with the update of the missing script: https://git.savannah.gnu.org/cgit/automake.git/commit/lib/missing?id=a22717dffe37f30ef2ad2c355b68c9b3b5e4b8c7

It will take time until developers of Autotools-based packages adjust their scripts 
to the new version, therefore, 2.69 is marked as preferred.
2021-01-28 11:21:04 +01:00
Adam J. Stewart
5b4d636d73
Clingo: fix missing import (#21364) 2021-01-28 00:38:01 -08:00
Tomoyasu Nojiri
181f921c1a
libpeas: restrict python version range, use pkgconfig virtual dependency (#21313) 2021-01-28 09:31:54 +01:00
Tomoyasu Nojiri
bcb0e80548
fox: add dependency to glu virtual package (#21280) 2021-01-28 09:29:36 +01:00
Jen Herting
0ebefcc92b
New package: py-proglog (#20750)
* [py-proglog] created template

* [py-proglog] added dependencies

* [py-proglog] fixed pypi url

* [py-proglog] removed fixmes, added homepage and description

* [py-proglog] url -> pypi

* [py-proglog] added dependency on setuptools
2021-01-27 20:59:19 -06:00
Rao Garimella
3dc5ffaf65
Update MSTK version (#21356)
* New interface reconstruction package

* forgot to put in CMake option for Jali

* cleanup whitespace

* fix lines with more than 79 chars

* more long line cleanup

* fix typo WONTON_ENABLE_Kokkos ---> TANGRAM_ENABLE_Kokkos

* New interface reconstruction package

* forgot to put in CMake option for Jali

* cleanup whitespace

* fix lines with more than 79 chars

* more long line cleanup

* fix typo WONTON_ENABLE_Kokkos ---> TANGRAM_ENABLE_Kokkos

* fix bugs in CMake section

* more compact cmake block

* update hash for 1.2.10 and add 1.2.11

* update recipe for Portage 3.0.0

* removing old versions - they won't build with the new recipe and the url specification doesn't work for them

* update version to 3.3.6

Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2021-01-27 20:58:02 -06:00
bryanherman
fe05b16922
New package: py-pytest-benchmark (#21324)
* added pytest-benchmark recipe

* Update var/spack/repos/builtin/packages/py-pytest-benchmark/package.py

Added Python2 dependence.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-27 20:57:24 -06:00
bryanherman
d1ce461a81
New package: py-pytest-cpp (#21328)
* added package py-pytest-cpp

* Update var/spack/repos/builtin/packages/py-pytest-cpp/package.py

package is !=5.4.0 use @:5.3.999

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-27 20:57:09 -06:00
bryanherman
4efeb39e95
New package: py-pytest-timeout (#21340)
* added package py-pytest-timeout

* Update var/spack/repos/builtin/packages/py-pytest-timeout/package.py

Added Python2.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-27 20:56:52 -06:00
bryanherman
f7a47e4048
New package: py-openmc (#21351)
* added package py-openmc

* Update var/spack/repos/builtin/packages/py-openmc/package.py

specify branch when using branch names for versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-openmc/package.py

use run after fixture to install openmc lib

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-openmc/package.py

Simplify copying openmc library to py-openmc prefix using install

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-openmc/package.py

NumPy should be 1.9+

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fix paren missing

* Update var/spack/repos/builtin/packages/py-openmc/package.py

fixed parens

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-openmc/package.py

use v0.11.0 in URL

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-27 20:56:35 -06:00
eugeneswalker
74fbad4742
autoconf: add version 2.70 (#21362) 2021-01-27 17:59:03 -08:00
Stephen Herbein
71375b3446
flux: update to latest releases (#21306) 2021-01-27 17:56:45 -08:00
bryanherman
cc28bcddd1
fix cpio for intel@18 (#21322) 2021-01-27 17:48:26 -08:00
Harmen Stoppels
3172fc3681
Add conflict for mpich 3.4.x for clang <= 7" (#21326) 2021-01-27 17:45:38 -08:00
Michael Kuhn
f9fef22ce8
rdma-core: add 33.1 (#21361) 2021-01-27 17:31:01 -08:00
Greg Becker
0d521d56ec
openmpi find external fixup (#21354) 2021-01-27 15:27:17 -08:00
Desmond Orton
18b3688cd1
Package/spades (#21227)
Co-authored-by: codeandkey <jtst@iastate.edu>
2021-01-27 23:28:37 +01:00
bryanherman
71bac42357
added gawk version 5.1.0 (#21342) 2021-01-27 13:48:53 -08:00
Christoph Junghans
6b63441281
libecpint: initial add (#21353)
* libecpint: initial add

* flake8
2021-01-27 14:19:48 -07:00
Rémi Lacroix
5ef2daaa4a
ELPA: Switch to HTTPS links. (#21352) 2021-01-27 22:06:44 +01:00
Andrew-Dunning-NNL
895c8b33d9
py-dpath: new recipe (#21331) 2021-01-27 14:46:40 -06:00
bryanherman
68a144eaa3
added package py-pytest-flakes (#21337) 2021-01-27 14:38:30 -06:00
Andrew-Dunning-NNL
52c32047ad
py-mailchecker: new recipe (#21346) 2021-01-27 14:33:23 -06:00
Andrew-Dunning-NNL
54f163f7dc
py-jsonpath-ng: new recipe (#21347) 2021-01-27 14:23:20 -06:00
Brian Van Essen
3cbc35dbdd
LBANN: add support for building with OneDNN. (#21305) 2021-01-27 21:11:31 +01:00
Brian Van Essen
aac3699748
OneDNN: add versions up to v2.1-rc (#21304) 2021-01-27 21:10:16 +01:00
Sergey Kosukhin
4d7a9df810
Add a context wrapper for mtime preservation (#21258)
Sometimes we need to patch a file that is a dependency for some other
automatically generated file that comes in a release tarball. As a
result, make tries to regenerate the dependent file using additional
tools (e.g. help2man), which would not be needed otherwise.

In some cases, it's preferable to avoid that (e.g. see #21255). A way
to do that is to save the modification timestamps before patching and
restoring them afterwards. This PR introduces a context wrapper that
does that.
2021-01-27 11:41:07 -08:00