Commit graph

26881 commits

Author SHA1 Message Date
Erik Schnetter
7917f87c63
cuda: New version 11.5.2 (#31463) 2022-07-12 13:52:12 +02:00
dependabot[bot]
e33a57ab65
build(deps): bump actions/setup-python from 4.0.0 to 4.1.0 (#31526)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.0.0 to 4.1.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](d09bd5e600...c4e89fac7e)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-07-12 13:50:30 +02:00
Mark W. Krentel
7f830295ae
hpcviewer: add v2022.06 (#31532) 2022-07-12 13:41:13 +02:00
Massimiliano Culpo
89b8d33d05
Remove os.getcwd from function signature (#31480)
fixes #29730

This is also wrong since it binds the directory at the time
of module import, rather than the one at the time of function
call.
2022-07-12 10:08:37 +02:00
Jonathon Anderson
25f198aa91
Sanitize ownership when extracting tarfiles (#31524) 2022-07-12 09:28:24 +02:00
Adam J. Stewart
5bd1074afb
py-hatchling: add new packages, document new build backend (#31512)
* py-hatchling: add new package, document new build backend

* Minor doc changes

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-07-11 16:23:28 -07:00
Michael Kuhn
18b51e19df
glib: add 2.72.3 (#31516) 2022-07-11 17:09:43 -06:00
renjithravindrankannath
21822f233c
Fix for sanity check failure in spack upstream code: atmi, hip-rocclr (#31454)
* Fix for sanity check failure in spack upstream code

* Style check failure correction

* Correction as per the review comments
2022-07-11 15:01:47 -07:00
Keita Iwabuchi
5f7f8ce1eb
Metall package: add v0.21 (#31482)
* Metall package: add dependency to GCC for build test

* Package Metall: add v.017

* Package Metall: update the package file

* Update var/spack/repos/builtin/packages/metall/package.py

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>

* Metall package: add v0.18 and v0.19

* Metall Package: add v0.20

* Metall package: add v0.21

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-07-11 14:54:57 -07:00
Richard Berger
ac09607a5a
ports-of-call: new version 1.2.0, simplify (#31485) 2022-07-11 14:53:36 -07:00
miheer vaidya
e0bbf26f1f
[cppcodec] new package (#31506) 2022-07-11 14:11:24 -07:00
Adam J. Stewart
1d827a9ff6
py-mypy: add v0.961 (#31503) 2022-07-11 12:34:09 -07:00
Adam J. Stewart
ba0cff1831
py-gpytorch: add v1.7.0 (#31504) 2022-07-11 12:30:58 -07:00
Adam J. Stewart
12699787e7
py-numpy: add v1.23.1 (#31510)
* py-numpy: add v1.23.1

* Remove packaging dep
2022-07-11 10:47:20 -07:00
Adam J. Stewart
c020894f36
py-torchgeo: add v0.3.0 (#31514) 2022-07-11 10:10:30 -07:00
Carlos Bederián
05a32b5cf5
ucx: add 1.13.0 (#31517) 2022-07-11 10:06:33 -07:00
Michael Kuhn
359d094528
julia: fix patch (#31515) 2022-07-11 16:13:47 +02:00
Harmen Stoppels
92dfe7f25b
man-db: Don't use DESTDIR (#31492) 2022-07-10 21:41:55 +02:00
Erik Schnetter
2159ce036e
openssl: New version 1.1.1q (#31487) 2022-07-08 13:25:43 -06:00
Adam J. Stewart
7e6dbfb185
py-setuptools: add v63.0.0 (#31444) 2022-07-08 10:41:15 -07:00
Harmen Stoppels
4043b13d59
vim: deprecate 9.0.0000, add 9.0.0045 (#31490) 2022-07-08 10:16:50 +00:00
Luke Diorio-Toth
ec7513c8b5
py-panaroo, py-edlib, and py-intbitset: new packages (#31452) 2022-07-07 18:13:39 -06:00
Erin Newcomer
44b48cfe46
Package/py phylophlan (#31422)
* py-phylophlan: new package

* py-phyloseq: new package

* py-phylophlan: style fix

* py-phylophlan: fixed dependencies

* py-phylophlan: style fix
2022-07-07 14:06:55 -07:00
Tamara Dahlgren
a12ce9fd59
OpenBabel: Make building with GUI an option (#31456) 2022-07-07 09:43:17 -07:00
Cory Bloor
bb92ea59a2
Fix spack edit message when no editor installed (#31412)
When no default editor is installed and no environment variable is set,
which_string would return None and this would be passed to os.execv
resulting in a TypeError. The message presented to the user would be:

    Error: execv: path should be string, bytes or os.PathLike,
    not NoneType

This change checks that which_string has returned successfully before
attempting to execute the result, resulting in a new error message:

    Error: No text editor found! Please set the VISUAL and/or EDITOR
    environment variable(s) to your preferred text editor.

It's not strictly necessary, but I've also changed try_exec to catch
all errors rather than just OSErrors. This would have provided slightly
more context for the original error message.
2022-07-07 17:08:15 +02:00
Stephen Sachs
626b239c96
[py-distributed] Add version 2022.2.1 (#31465) 2022-07-07 08:06:18 -07:00
Adam J. Stewart
211030cd19
py-pytorch-lightning: remove upper bounds on deps (#31443) 2022-07-07 17:05:33 +02:00
Stephen Sachs
3787f0c64c
mpas-model: Overwrite compiler args in Makefile (#31431)
Use 8 byte reals only when `precision=double` is set

The pre-defined compilation targets do not follow the usual behavior of
Makefiles. Compiler flags are set as strings (not Makefile variables) and as
such are not able to be overridden by environment variables. This patch changes
the behavior to the expected behavior of a Makefile such that `fflags` etc have
the desired effect.

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07 17:04:51 +02:00
Ryan Marcellino
be65e4471e
speexdsp: add pkgconfig dependency (#31455) 2022-07-07 16:53:11 +02:00
Adam J. Stewart
8745009492
py-tensorboard: install from wheel (#31445) 2022-07-07 16:48:06 +02:00
Adam J. Stewart
7c5116a73a
py-rasterio: add v1.3.0 (#31457) 2022-07-07 16:46:52 +02:00
Stephen Sachs
e6bdbde54e
libzmq: fix issue with newer GCC and master branch (#31468)
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07 08:45:37 -06:00
Adam J. Stewart
386f08c1b4
py-torch: re-add headers/libs properties (#31446) 2022-07-07 16:31:09 +02:00
Adam J. Stewart
9c437e2a10
py-torchgeo: tiff support required (#31447) 2022-07-07 16:30:18 +02:00
Marie Houillon
d393260a11
Fix conditional dependencies for openCARP (#31478) 2022-07-07 08:21:41 -06:00
Tamara Dahlgren
1b919d306f
Documentation: Add SourceforgePackage to the build systems docs (#31473) 2022-07-07 14:30:22 +02:00
Stephen Sachs
ad95b0d01d
[py-ipyparallel] setuptools.config.StaticModule moved (#31467)
* [py-ipyparallel] setuptools.config.StaticModule moved

... in py-setuptools@61

* [py-ipyparallel] setuptools fix only added to release 8.2.1

https://github.com/ipython/ipyparallel/pull/680

* [py-ipyparallel] Fix typo

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-07 03:17:36 -06:00
Vanessasaurus
6b1e86aecc
removing feature bloat: monitor and analyzers (#31130)
Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2022-07-07 00:49:40 -06:00
Stephen Hudson
3338d536f6
libEnsemble: add v0.9.2 (#31471) 2022-07-06 19:14:12 -07:00
Erik Schnetter
6cbcc94fc9
kokkos: New version 3.6.01 (#31462) 2022-07-06 14:33:48 -06:00
Erik Schnetter
c7ac0b9aa6
spiner: New version 1.5.1 (#31461) 2022-07-06 14:21:53 -06:00
Adam J. Stewart
5efe0822b8
pip bootstrap packages: add myself as maintainer (#31448) 2022-07-06 14:05:42 -06:00
Kenny Weiss
5d97c816ca
Minor typo fix in mfem's package (#31470)
Pointed out by @agcapps
2022-07-06 12:52:23 -07:00
Tamara Dahlgren
e68ed3268b
Testing Bugfix: refactor clean --python-cache to support all (#31449)
There were two choices: 1) remove '-p' from '-a' or 2) allow monkeypatching
the cleaning of the python cache since clean's test_function_calls isn't
supposed to be actually cleaning anything.

This commit supports the latter and adds a test case for `-p`.
2022-07-06 11:44:41 -07:00
Weiqun Zhang
9a711e6ffa
amrex: add v22.07 (#31464) 2022-07-06 11:13:44 -06:00
iarspider
fcea26ca23
Add checksum for py-lazy-object-proxy 1.7.0 and 1.7.1 (#31435)
* Add checksum for py-lazy-object-proxy 1.7.0 and 1.7.1

* Update package.py
2022-07-06 10:06:37 -07:00
iarspider
687cac3a79
Add checksum for py-pylint 2.14.4; py-astroid 2.11.5, 2.11.6 (#31436)
* Add checksums for astroid 2.11.5 and 2.11.6

* Add checksum for py-pylint 2.14.4

* Update package.py

* Add checksum for py-tomlkit 0.11.0
2022-07-06 09:58:35 -07:00
otsukay
d9f49d7415
add recipe for improved-rdock (#31158)
* add recipe for improved-rdock

* style: fix format

* style: fix format again

* Fix location of the directory

* Fix copyright

* Fix according to the reviewer's comments.

* Revert "Fix according to the reviewer's comments."

This reverts commit 4877877dafda4566a18a33c6ffef6e681b4da896.

* Fix according to the reviewer's comments.

* style: fix format

* Update var/spack/repos/builtin/packages/improved-rdock/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Yuichi Otsuka <otsukay@riken.jp>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-07-06 09:25:45 -07:00
Erik Schnetter
ccb5432177
readline: New version 8.1.2 (#31025) 2022-07-06 16:32:12 +02:00
Mikael Simberg
dfb0c6c51d
Add pika 0.6.0 (#31458) 2022-07-06 11:55:58 +02:00