Commit graph

21070 commits

Author SHA1 Message Date
Adam J. Stewart
a59fcd60f5 Python 3.10 support: collections.abc (#20441)
(cherry picked from commit 40a40e0265)
2021-05-21 14:55:18 +02:00
Hang Yan
e42b27de7e
thrust: update repo and add new versions (#23364) 2021-05-21 09:50:33 +02:00
Hang Yan
586c08fb86
cub: update repo and add new versions (#23363) 2021-05-21 09:49:37 +02:00
Glenn Johnson
71b9e67b3c
Modification to R environment (#23623)
* Modification to R environment

This PR modifies how the R environmnet is presented, and fixes
installing the standalone Rmath library.

- The Rmath build and install methods are combined into one
- Set parallel=False when installing Rmath
- remove the run environment that set up variables for libraries and
  headers that are not really needed, and pollute the environment.

* Add setup_run_environment back

- Add back the setup_run_environment with LD_LIBRARY_PATH and
  PKG_CONFIG_PATH.
- Adjust documentation to reflect the current code.
2021-05-21 09:34:15 +02:00
Olivier Cessenat
3dfb61116d
openblas: update Intel patch directive (#23786) 2021-05-21 09:32:40 +02:00
Olivier Cessenat
5e782f6a23
gsl: update external-cblas patch directive (#23787) 2021-05-21 09:31:31 +02:00
Adam J. Stewart
2d69f63a9c
ghostscript: add tesseract variant (#23794) 2021-05-21 09:22:03 +02:00
Cameron Rutherford
63ea0c8865
exago: enforcing PETSc version < 3.15 (#23774) 2021-05-21 09:20:58 +02:00
Adam J. Stewart
72b6014861
tk: add new version, add macOS patch (#23825) 2021-05-21 09:04:50 +02:00
arjun-raj-kuppala
b8fc1094ff
rdc: add v4.2.0 (#23829) 2021-05-21 08:57:40 +02:00
Dan Bonachea
1242f10d11
Update the GASNet package (#23796)
The previous `gasnet` spack package was not vetted/approved by the GASNet library maintainers. This one is.

Notably adds build-time testing and smoke-testing.

Convert network variants into a multi-valued `conduits` variant has the minor advantage of enabling a concise `conduits=none` spec, but the major drawback that it degrades the `spack info gasnet` output.
2021-05-20 23:19:21 -07:00
Glenn Johnson
6e378102fd
New package: py-reindent (#23828) 2021-05-20 21:27:59 -05:00
Seth R. Johnson
d2178fb47b
swig: add smoke tests (#23662) 2021-05-20 17:00:20 -07:00
Olivier Cessenat
3f184b5874
New Package: visit-silo (#22907)
* New Package: visit-silo
* New Package: visit-$n as an extension to VisIt
* New Package: visit-$n only as an extension to VisIt
2021-05-20 15:20:49 -07:00
Olivier Cessenat
12dbae3b45
New Package: visit-cgns (#22905)
* New Package: visit-cgns
* visit-cgns: extends visit and modifies VISIT_PLUGIN_DIR with a trick
2021-05-20 15:20:19 -07:00
Massimiliano Culpo
4c4a584a9c spack: update archspec
This fixes the detection of Apple M1 and adds
virtual levels for x86_64 architectures
2021-05-20 14:56:04 -07:00
Ben Darwin
fcb8942c88
minc-toolkit: new package (#23818) 2021-05-20 21:36:06 +00:00
Cyrus Harrison
30991cd9cd
add ascent 0.7.1 release (#23823) 2021-05-20 14:15:10 -07:00
Valentin Volkl
b27ccd524e
versions: do not drop 2.0.X if 2.0 is a declared version in the package (#23217) 2021-05-20 19:16:46 +00:00
Cyrus Harrison
1d10245fd4
dray package: add version 0.1.6 (#23792) 2021-05-20 12:04:05 -07:00
Adam J. Stewart
ea5b5a6d3f
py-torch: add patch to build on systems with glibc<2.12 (#23806) 2021-05-20 20:16:50 +02:00
Olivier Cessenat
f66f7faee1
opencascade: add v7.4.0p2 and v7.5.2 (#23807) 2021-05-20 20:16:29 +02:00
Ben Darwin
ef12b0cb8f
ants: add v2.3.5 (#23752) 2021-05-20 17:01:21 +00:00
Valentin Volkl
7c8b5a4e3a
py-awkward: add version 1.2.3 (#23808)
* dlpack: add tagged versions

* py-pybind11: add missing test dependency

* py-awkward: add version 1.2.3
2021-05-20 10:28:57 -06:00
Andreas Baumbach
2716791c7d
py-lazyarray: add new version 0.3.2 (#23700)
* py-lazyarray: add new version 0.3.2

Change-Id: Ie8a40f3ff1fe7477e27f6085b9ad6673395258b2

* fixup dependencies

Change-Id: I4b2fb7a0abb462f8df74c383c67517065cd95b67

* Update var/spack/repos/builtin/packages/py-lazyarray/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-05-20 11:28:23 -05:00
Harmen Stoppels
3368e06bc6
gnupg: create a gpg2 symlink on install (#23789) 2021-05-20 18:28:13 +02:00
Andreas Baumbach
ed4de5a688
py-py-cpuinfo: add v6.0.0 and v8.0.0 (#23721) 2021-05-20 17:59:33 +02:00
Chris White
7055846ca1
Axom: Small updates and a new version (#23803)
* Tweak SCR variant, Add 0.5.0, Move flag to flag handler, Add new conduit/axom conflict

* flake
2021-05-20 08:26:33 -07:00
Andreas Baumbach
cf20ee0893
vim: add new version (#23730) 2021-05-20 15:08:53 +00:00
Harmen Stoppels
5846079028
Cray: fix extracting paths from module files (#23472)
Co-authored-by: Tiziano Müller <tm@dev-zero.ch>
2021-05-20 14:35:35 +02:00
arjun-raj-kuppala
6d42be5739
AMD ROCm 4.2.0: Bump up rocm recipes part 2 (#23779)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-05-20 10:58:55 +00:00
Sreenivasa Murthy Kolam
b57b473e51
bump up version for rocm-4.2.0 release (#23795) 2021-05-20 04:55:16 -06:00
Sreenivasa Murthy Kolam
fec9e5c7bd
bump up the version for rocm-4.2.0 release (#23778) 2021-05-20 12:49:40 +02:00
Olivier Cessenat
bd47eaf0f8 visit: make it extendable for plugins 2021-05-20 00:16:03 -07:00
Jon Rood
6f75c6f3fa
findutils: use homebrew trick to build findutils 4.8.0 with apple-clang (#23801)
* Use homebrew trick to build findutils 4.8.0 with apple-clang.

* Simplify.
2021-05-19 21:58:07 -05:00
Andreas Baumbach
d2e22d7fe4
py-pluggy: add versions 0.9.0 and 0.8.1 (#23719) 2021-05-19 15:15:13 -07:00
yellowhat
9784b1b0e9
fio: add 3.26 (#23788) 2021-05-19 16:07:17 -06:00
Andreas Baumbach
a3be77d02e
py-mako: add version 1.1.4 (#23718) 2021-05-19 14:37:15 -07:00
Cyrus Harrison
7febe23ebc
add vtk-h 0.7.1 release (#23791) 2021-05-19 14:05:24 -07:00
Cyrus Harrison
32b9bea06a
add conduit 0.7.2 release (#23797) 2021-05-19 14:04:29 -07:00
plamborn
d17783ff70
libhio: add 1.4.15 (#23708)
adding checksum for new 1.4.1.5 version of libhio
2021-05-19 14:37:17 -06:00
Tamara Dahlgren
8c64a1cda6
umpire: preliminary stand-alone test simplification (#23627) 2021-05-19 13:28:30 -07:00
Andreas Baumbach
0a7a23068a
py-setuptools: add older version 41.3.0 (#23725)
Change-Id: I0416a66b523472151d73433a12d38a5b2b225c69
2021-05-19 20:06:43 +00:00
Desmond Orton
e718a871f3
Updated Archives links for 3.X (#23763) 2021-05-19 14:24:57 -05:00
Desmond Orton
a0af8c9c65
libdeflate: new package (#23762)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-05-19 21:21:45 +02:00
Andreas Baumbach
944be7a568
py-checkm-genome: fix backportsdependency (#23690) 2021-05-19 12:21:10 -07:00
Andreas Baumbach
e7b11c3098
cquery package: patch for gcc@10: (#23679) 2021-05-19 12:15:02 -07:00
Andreas Baumbach
f3c3fc7493
new package: py-batchspawner (#23688)
* new package: py-batchspawner

Change-Id: I508bad7ba7f1fc32c2f6c0bfccf35d864cf47ced

* fixup

Change-Id: If183933ce40a8d12214ea24acc683cb046fcfbcb

* fix broken version

Change-Id: Ie4dd8d18465877cd8f9cb862112af37d85b1c30f

* fixup license

Change-Id: I51d92a6d229f6a6b56eea6e53c65ed31fe59f6af

* Update var/spack/repos/builtin/packages/py-batchspawner/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-05-19 14:12:53 -05:00
Andreas Baumbach
142c85fe22
py-git-review add version 1.27.0 (#23693)
* py-git-review add version 1.27.0

Change-Id: Ibf2c52009b8d218561a385a592a3fa1266305212

* fixup dependencies and add version 2:

Change-Id: I94e974158afba61d102b04a78634cc276881783c

* fixup

Change-Id: I05d8aab0ddb8c7bc18460ba2da1372cd282a4353
2021-05-19 14:08:17 -05:00
Andreas Baumbach
6d5cd24480
py-neo: add version 0.8.0 (#23717) 2021-05-19 11:58:42 -07:00