Commit graph

23957 commits

Author SHA1 Message Date
Bernhard Kaindl
bd0960cda8
gpgme: Add 0.16.0 and address test suite issues (#27604)
A part of the gpgme testsuite by default even runs during normal
make and make install phases, creating a public keyring in ~/.gnupg.
Prevent this and avoid build failures in containers due to another
problem of the test suite and fix a test case of the new 0.16.0 release.
2021-11-29 16:43:12 +01:00
Ethan Stam
cfd2ea0cff
ParaView: Build edition strings should be uppercase (#27534) 2021-11-29 16:38:25 +01:00
Adam J. Stewart
e5e9dc2d92
py-pytorch-lightning: add v1.5.3 (#27650) 2021-11-29 16:31:58 +01:00
Derek Ryan Strong
f8d03b1060
pixz: add v1.0.7 (#27651) 2021-11-29 16:29:10 +01:00
Harmen Stoppels
037ece674b
distro: don't use deprecated linux_distribution (#27658) 2021-11-29 16:26:19 +01:00
Nicolas Cornu
87cf38a427
Random123: add v1.14.0 from github (#27660) 2021-11-29 16:13:50 +01:00
Massimiliano Culpo
0d10408a25
bootstrap: restrict patchelf to v0.13.x (#27685) 2021-11-29 15:41:25 +01:00
Bernhard Kaindl
48d98b4c9e
podman: new package (with dependencies) (#27603)
When the uidmap tools are installed on a system, this allows to run
containers as unprivileged user (rootless and daemonless) slimilar
to singularity, but using a familiar CLI: "alias docker=podman"

This is helpful to run e.g. spack builds in containers to reproduce
build failures from CI without requiring a installation of docker.
The required dependencies of podman are added as well.
2021-11-29 15:39:19 +01:00
Valentin Volkl
64c4fbd220
edm4hep: update hepmc dependency (#27678) 2021-11-29 14:55:07 +01:00
Bernhard Kaindl
af0ba4e3ef
gtkplus: fix build of GTK2 versions with gcc-11, skip X tests (#26970)
Fix to not attempt to patch a nonexisting file for old versions
when building with gcc-11. Skip the build-time tests as all access
the X DISPLAY and open many windows on the screen.
2021-11-29 14:46:51 +01:00
Harmen Stoppels
5dce4d79bd
patchelf: add v0.13.1, v0.14, v0.14.1 (#27681) 2021-11-29 13:46:15 +01:00
Paul Ferrell
c0edb17b93
Handle byte sequences which are not encoded as UTF8 while logging. (#21447)
Fix builds which produce a lines with non-UTF8 output while logging
The alternative is to read in binary mode, and then decode while
ignoring errors.
2021-11-29 13:27:02 +01:00
Vanessasaurus
bdde70c9d3
"branch" spelling mistake in libbeato (#27682)
I was browsing package metadata, as one does on a Sunday, and stumbled across a new kind of version attribute - brancch! I suspect this is supposed to be "branch."
2021-11-29 13:17:40 +01:00
iarspider
8ff81d4362
Fix py-astroid recipe (#27670) 2021-11-28 11:07:53 -06:00
Mark Grondona
1b71ceb384
add flux-core v0.31.0 and flux-sched v0.20.0 (#27336)
Update flux-core and flux-sched package.py to include latest releases.

For flux-sched:

 - Add patch to disable false-positive-happy valgrind test
 - pin yaml-cpp to 0.6.3 due to issue described at:
   https://github.com/flux-framework/flux-sched/issues/886
2021-11-28 02:18:00 +01:00
Joseph Wang
0ab5828d0d
gdk-pixbuf: Fix 2.42.2 and add 2.42.6 (#27254)
Starting with meson 0.60, unknown args produce errors and
the -Dx11 arg is only present in @:2.40
https://gitlab.gnome.org/GNOME/gtk-osx/-/issues/44

Add tiff variant: Default disabled since fails the tests in part.
Only libtiff@:3.9 pass, but these old versions have severe security issues.

Deprecate @:2.41 as they are affected by the high-severity CVE-2021-20240:
https://nvd.nist.gov/vuln/detail/CVE-2021-20240
2021-11-28 01:30:14 +01:00
iarspider
d5b243de14
py-scipy: update pybind11 versions (#27679) 2021-11-27 16:03:43 -06:00
iarspider
1d8d975721
Apply requested fix from #27643 (#27672) 2021-11-26 16:45:38 -06:00
iarspider
96ce0e393d
New version: py-send2trash 1.8.0 (#27583) 2021-11-26 14:35:03 -07:00
Jannis Schönleber
cf3762369c
dyninst: use spack libiberty path (#25779) 2021-11-26 15:58:53 -05:00
iarspider
8138ebaa32
New version: py-tomlkit 0.7.2 (#27633) 2021-11-26 13:11:20 -07:00
iarspider
eb42514124
New version: py-threadpoolctl 3.0.0 (#27632) 2021-11-26 13:10:58 -07:00
Harmen Stoppels
4d6891162d
Use bash in setup_git.sh (#27676) 2021-11-26 18:03:05 +00:00
iarspider
978f091822
Fix py-aiohttp recipe (#27671) 2021-11-26 08:17:01 -07:00
Massimiliano Culpo
a96f2f603b
Bootstrap patchelf like GnuPG (#27532)
Remove a custom bootstrapping procedure to
use spack.bootstrap instead

Modifications:
* Reference count the bootstrap context manager
* Avoid SpackCommand to make the bootstrapping
  procedure more transparent
* Put back requirement on patchelf being in PATH for unit tests
* Add an e2e test to check bootstrapping patchelf
2021-11-26 15:32:13 +01:00
iarspider
2cdc758860
Fix version constraint in py-ipykernel (#27665)
* Fix version constrains in py-ipykernel and py-ipython

Before the fix:
```
$ spack spec  py-ipykernel@6.4.1  ^py-jupyter-client@7.0.6
==> Error: py-ipykernel@6.4.1 ^py-jupyter-client@7.0.6 is unsatisfiable, conflicts are:
  no version satisfies the given constraints
```

After the fix:
```
```
(thanks god the old concretizer is still there - it provides sane error messages!)

* Fix py-ipython recipe

* Revert "Fix py-ipython recipe"

This reverts commit d65071665f002fa20721c3d87ae25354bec06ec5.
2021-11-25 17:58:43 -07:00
Seth R. Johnson
9904159356
New package: py-sphinx-argparse (#27663) 2021-11-25 13:54:34 -06:00
Maxim Belkin
6e095a9741
module_file_support: update format for configuration (#27598) 2021-11-25 08:41:32 +01:00
iarspider
90b4f55001
New version: py-theano 1.0.5 (#27631) 2021-11-24 18:16:48 -07:00
iarspider
60e683f5d3
New version: py-requests 2.26.0 (redo of #27579) (#27647) 2021-11-24 17:38:01 -07:00
iarspider
a9a6e00d14
New version: py-rsa 4.7.2 (#27581) 2021-11-24 16:52:44 -07:00
iarspider
6fa0feb7de
New version: py-rich 10.14.0 (redo of #27580) (#27646) 2021-11-24 16:04:53 -07:00
iarspider
0db93a5dea
py-virtualenv package: add version 20.10.0; new dependency py-distlib (#27637)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-11-24 15:38:03 -07:00
Massimiliano Culpo
270ba10962
spack flake8: remove deprecated command (#27290)
The "spack flake8" command wwas deprecated in favor
of "spack style". The deprecation wwarning is in the
0.17.X series, so removing it for v0.18.x
2021-11-24 14:20:11 -08:00
iarspider
f8025d4f88
New version: py-requests-oauthlib 1.3.0 (#27578) 2021-11-24 16:20:02 -06:00
liuyangzhuan
83f97e8eba
Adding packages for gptune and its dependencies (#26936)
* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize

* adding gptune package

* minor fix for macos spack test

* update patch for py-scikit-optimize; update test files for gptune

* fixing gptune package style error

* fixing unit tests

* a few changes reviewed in the PR

* improved gptune package.py with a few newly added/improved dependencies

* fixed a few style errors

* minor fix on package name py-pyro4

* fixing more style errors

* Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* resolved a few issues in the PR

* fixing file permissions

* a few minor changes

* style correction

* minor correction to jq package file

* Update var/spack/repos/builtin/packages/py-pyro4/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fixing a few issues in the PR

* adding py-selectors34 required by py-pyro4

* improved the superlu-dist package

* improved the superlu-dist package

* moree changes to gptune and py-selectors34 based on the PR

* Update var/spack/repos/builtin/packages/py-selectors34/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-11-24 16:06:43 -06:00
Brian Spilner
d6b0c838dd
cdo package: add version 2.0.1 (#27608) 2021-11-24 13:20:28 -08:00
Paul
94bcd21ccd
Go package: add versions 1.17.3 and 1.16.10 (#27614) 2021-11-24 13:10:23 -08:00
Satish Balay
d8ac578ce1
petsc: add variant kokkos (with +cuda) (#27624) 2021-11-24 13:09:14 -08:00
Tim Haines
f9bae91dea
Dyninst package: Add versions 12.0.0 and 12.0.1 (#27623) 2021-11-24 12:23:30 -08:00
iarspider
6147b47719
py-terminado package: add version 0.12.1 (#27629) 2021-11-24 12:03:04 -08:00
iarspider
191de76ccb
py-testpath package: add version 0.5.0 (#27630) 2021-11-24 12:02:18 -08:00
iarspider
b500d40a25
py-uproot package: add version 4.1.8 (#27635) 2021-11-24 12:01:25 -08:00
iarspider
43c663c5cf
py-virtualenv-clone package: add version 0.5.7 (#27636) 2021-11-24 11:58:41 -08:00
iarspider
3fdab96728
py-virtualenvwrapper package: add version 4.8.4 (#27638) 2021-11-24 11:45:36 -08:00
iarspider
fcd51d81d9
py-wcwidth package: add version 0.2.5 (#27639) 2021-11-24 11:44:51 -08:00
iarspider
83a2014ede
py-websocket-client package: add version 1.2.1 (#27640) 2021-11-24 11:43:42 -08:00
iarspider
1c38810e11
py-wheel package: add version 0.37.0 (#27641) 2021-11-24 11:42:02 -08:00
Maciej Wójcik
10ca5f1cd2
GROMACS-SWAXS package: add versions including 2021.4-0.1 (#27642) 2021-11-24 11:41:16 -08:00
iarspider
e7eaebebd4
py-yarl package: add version 1.7.2 (#27643) 2021-11-24 11:40:06 -08:00