Commit graph

14654 commits

Author SHA1 Message Date
Michael Kuhn
545fae8407
spack checksum: Use package's fetch_options (#15481)
This makes sure that a package's fetch_options are used when fetching
new versions to checksum. This allows working around problems with
slow servers or those requiring a cookie to be set.
2020-03-20 12:11:42 -07:00
Greg Becker
30b4704522 Cray bugfix: TERM missing while reading default target (#15381)
Bug: Spack hangs on some Cray machines

Reason: The TERM environment variable is necessary to run bash -lc "echo $CRAY_CPU_TARGET", but we run that command within env -i, which wipes the environment.

Fix: Manually forward the TERM environment variable to env -i /bin/bash -lc "echo $CRAY_CPU_TARGET"
2020-03-20 11:47:10 -07:00
Kai Germaschewski
09e13cf7cf Upstreams: don't write metadata directory to upstream DB (#15526)
When trying to use an upstream Spack repository, as of f2aca86 Spack
was attempting to write to the upstream DB based on a new metadata
directory added in that commit. Upstream DBs are read-only, so this
should not occur.

This adds a check to prevent Spack from writing to the upstream DB
2020-03-20 11:46:23 -07:00
Massimiliano Culpo
296d58ef6b Creating versions from urls doesn't modify class attributes (#15452)
fixes #15449

Before this PR a call to pkg.url_for_version was modifying
class attributes determining different results for subsequents
calls and an error when the urls was empty.
2020-03-20 11:45:40 -07:00
Greg Becker
ec720bf28d bugfix: fix install_missing_compilers option bug from v0.14.0 (#15416)
* bugfix: ensure bootstrapped compilers built before packages using the compiler
2020-03-20 11:44:59 -07:00
Todd Gamblin
1e42f0a545 bugfix: installer.py shouldn't be executable (#15386)
This is a minor permission fix on the new installer.py introduced in #13100.
2020-03-20 11:44:23 -07:00
eugeneswalker
2f8ff722a9
tau: add dependency on hwloc (#15589) 2020-03-20 11:44:03 -07:00
Patrick Gartung
62683eb4bf Add function replace_prefix_nullterm for use on mach-o rpaths. (#15347)
This recovers the old behavior of replace_prefix_bin that was
modified to work with elf binaries by prefixing os.sep to new prefix
until length is the same as old prefix.
2020-03-20 11:43:54 -07:00
Massimiliano Culpo
901bed48ec ArchSpec: fix semantics of satisfies when not concrete and strict is true (#15319) 2020-03-20 11:42:22 -07:00
Adam J. Stewart
cc8d9eee8e suite-sparse: fix installation for v5.X (#15326)
fixes #15184

GraphBLAS depends on m4 according to CMake error message
Do not use INSTALL= when compiling the library
2020-03-20 11:41:59 -07:00
Tamara Dahlgren
1c8f792bb5 testing: increase installer coverage (#15237) 2020-03-20 11:40:52 -07:00
Tamara Dahlgren
9a1ce36e44 bugfix: resolve undefined source_pkg_dir failure (#15339) 2020-03-20 11:40:39 -07:00
Adam J. Stewart
3f4d300c84
sentencepiece: add new package (#15596) 2020-03-20 13:39:39 -05:00
Massimiliano Culpo
59a7963785 Bugfix: resolve StopIteration message attribute failure (#15341)
Testing the install StopIteration exception resulted in an attribute error:

AttributeError: 'StopIteration' object has no attribute 'message'

This PR adds a unit test and resolves that error.
2020-03-20 11:39:28 -07:00
Tamara Dahlgren
733f9f8cfa Recover coverage from subprocesses during unit tests (#15354)
* Recover coverage from subprocesses during unit tests
2020-03-20 11:38:28 -07:00
Massimiliano Culpo
fa0a5e44aa Correct pytest.raises matches to match (#15346) 2020-03-20 11:35:49 -07:00
Tamara Dahlgren
5406e1f43d bugfix: Add dependents when initializing spec from yaml (#15220)
The new build process, introduced in #13100 , relies on a spec's dependents in addition to their dependencies. Loading a spec from a yaml file was not initializing the dependents.

- [x] populate dependents when loading from yaml
2020-03-20 11:34:23 -07:00
Seth R. Johnson
f3a1a8c6fe Uniquify suffixes added to module names (#14920) 2020-03-20 11:33:07 -07:00
Tamara Dahlgren
b02981f10c bugfix: ensure proper dependency handling for package-only installs (#15197)
The distributed build PR (#13100) -- did not check the install status of dependencies when using the `--only package` option so would refuse to install a package with the claim that it had uninstalled dependencies whether that was the case or not.

- [x] add install status checks for the `--only package` case.
- [x] add initial set of tests
2020-03-20 11:23:28 -07:00
Andrew W Elble
654914d53e Fix for being able to 'spack load' packages that have been renamed. (#14348)
* Fix for being able to 'spack load' packages that have been renamed.

* tests: add test for 'spack load' of a installed, but renamed/deleted package
2020-03-20 11:21:40 -07:00
Michael Kuhn
3753424a87 modules: store configure args during build (#11084)
This change stores packages' configure arguments during build and makes
use of them while refreshing module files. This fixes problems such as in
#10716.
2020-03-20 11:16:39 -07:00
Greg Becker
32a3d59bfa fetch_strategy: remove vestigial code (#15431) 2020-03-20 11:14:37 -07:00
Adam J. Stewart
6f3983b1c7
py-dgl: add new package (#15594) 2020-03-20 12:42:24 -05:00
Benjamin Fovet
e66a7530a1
Add NLopt version 2.6.1 (#15595) 2020-03-20 12:42:01 -05:00
Kevin Manalo
3b70c932aa
papi: add version 6.0.0 (#15590) 2020-03-20 10:08:54 -07:00
Dr. Christian Tacke
cf45d38d24
root: Add version 6.20.{00,02} (#15487)
* Add version 6.20.{00,02}, don't yet mark it preferred
* It needs zstd
* It needs numpy (at least for 6.20.00:6.20.03)
* Reorder python dependencies a bit

* Add mlp variant, default False
  Older versions always include mlp, so no conflicts there.
* Disable tmva, because it needs mlp
* tmva needs mlp, so add conflict
2020-03-20 16:55:48 +00:00
Dr. Christian Tacke
03945c2541
Show the packaga name for a missing patch sha256 (#15441)
When a patches sha256 is missing, also show the
packagename, so that analyzing is easier.
2020-03-20 11:39:04 -05:00
Matthieu Dorier
d14a6e6bc7
Added two new versions of spdlog (#15586) 2020-03-20 09:19:06 -05:00
darmac
5f63fc5316
add new package: glusterfs (#15565)
* add new package: glusterfs

* fix list_depth for url

* remove list_depth

* add list_url for glusterfs
2020-03-20 09:18:24 -05:00
darmac
6cccce4932
add new package lksctp-tools (#15564)
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-03-20 10:11:12 +01:00
Adam J. Stewart
03a88a2d3f
py-decorator: added v4.4.2 (#15581) 2020-03-20 10:10:19 +01:00
Adam J. Stewart
b4f1f42e4f
py-networkx: add 2.4 (#15582) 2020-03-20 10:09:48 +01:00
Adam J. Stewart
9a71a76461
py-tfdlpack: add new package (#15583) 2020-03-20 10:08:54 +01:00
Hadrien G
fdf363eaad
acts-core: added v0.18, updated boost dependency (#15584) 2020-03-20 10:06:45 +01:00
Andreas Baumbach
3f83d4d8f5
htop: add missing python build dependency (#15585) 2020-03-20 10:05:30 +01:00
Kevin Huck
625bf187d2
perfstubs: added new package (#15547) 2020-03-20 09:41:36 +01:00
Andrew Gaspar
e2cf6f5b1b
Improvements to Rust's Installation (#15395)
* Add sources and resources for each version of Rust

* install bootstrapping compiler into stage

* Add libgit2

* Install bootstrapping compiler correctly

* implement full rust bootstrap

* Remove support for Rust pre-1.14

Also add lots of comments

* Support only Rust 1.17 and newer

* Remove < 1.23 versions of Rust

* Change the layout of rust_releases for maintainability

* Remove LLVM variant

* Address flake8 issues

* Make libgit2 curl variant default False, conflict 0.28 and newer

* Remove binutils dependency

* Add ARM64 while we're at it

* flake8

* use the 'python' routine rather than relying on the correct python to be picked up
2020-03-19 22:57:41 -05:00
darmac
a89c5b36f0
add new package: bcache (#15563)
* add new package: bcache

* add depends: gettext for libintl
2020-03-19 22:57:04 -05:00
darmac
ce7cd7a5ab
add new package: libiscsi (#15579) 2020-03-19 22:35:59 -05:00
Nithin Senthil Kumar
b522296a5a
Update MVAPICH2 package for 2.3.3 release (#15578)
Co-authored-by: senthilkumar.16 <senthilkumar.16@nowlab.cse.ohio-state.edu>
2020-03-19 20:59:00 -05:00
Greg Becker
e5f8b093a9
Cray bugfix: TERM missing while reading default target (#15381)
Bug: Spack hangs on some Cray machines

Reason: The TERM environment variable is necessary to run bash -lc "echo $CRAY_CPU_TARGET", but we run that command within env -i, which wipes the environment.

Fix: Manually forward the TERM environment variable to env -i /bin/bash -lc "echo $CRAY_CPU_TARGET"
2020-03-19 15:11:50 -07:00
Teodor Nikolov
a61c53a5c9
cosma: added package at v2.0.2 (#15497)
* [new package] COSMA

* Use virtual dependencies
2020-03-19 14:50:12 -05:00
Jordan Ogas
f9e58a52da
add charliecloud/0.14; remove umoci/skopeo; remove builder variant (#15573)
* add charliecloud/0.14; remove umoci/skopeo; remove builder variant

* fix typo

* add maintainer; add explicit config doc options; add py-requests as run dependency

* add autoconf build dependencies
2020-03-19 14:49:11 -05:00
Kai Germaschewski
b583b0e112
petsc fix hdf5 (#15572)
* petsc: add checksum for 3.12.4

* petsc: constrain hdf5 to <= 1.10.x

Current petsc will error when being build with hdf5 1.12, so this ensures that
a compatible hdf5 will be used. Fix suggested by @balay.
2020-03-19 11:42:19 -05:00
darmac
ef68d1f5df
add new package: ntirpc (#15561) 2020-03-19 11:22:03 -05:00
darmac
8142b2dc6b
add new package: yarn (#15562) 2020-03-19 11:21:37 -05:00
Yannik Stradmann
bfa72ed926
Add package: py-deprecated (#15571)
https://github.com/tantale/deprecated
2020-03-19 11:15:19 -05:00
Todd Gamblin
3255eaba0d refactor: spack.package.possible_dependencies() handles virtuals
- [x] move some logic for handling virtual packages from the `spack
  dependencies` command into `spack.package.possible_dependencies()`

- [x] rework possible dependencies tests so that expected and actual
  output are on the left/right respectively
2020-03-19 09:00:40 -07:00
Todd Gamblin
7cfa497912 bugfix: spack.package.possible_dependencies() should return virtuals
`spack.package.possible_dependencies()` was forgetting to pass the
`visited` dict to recursive calls; this fixes it
2020-03-19 09:00:40 -07:00
Michael Kuhn
0b1b8c3936
openssl: added v1.1.1e and v1.0.2u (#15568) 2020-03-19 15:34:18 +01:00