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Author SHA1 Message Date
wspear
93c34039e4 python-editor: added new package at v1.0.4 (#13126) 2019-10-17 08:46:34 +02:00
Christoph Junghans
6cd997e743
eospac: avoid conflict with linux's getopt (#13241) 
* eospac: avoid conflict with linux's getopt

* Update package.py
 2019-10-16 18:46:26 -07:00
Jeffrey Salmond
e17df2e8f5 add python version 3.8.0 (#13218) 2019-10-16 14:42:36 -07:00
Christoph Junghans
b0543005b2
expat: don't pick up external docbook (#13228) 2019-10-16 05:59:51 -07:00
Jeffrey Salmond
f08f4201c7 add latest version of vim (#13203) 2019-10-15 20:43:03 -07:00
Satish Balay
5ea0eed287 hypre: add version 2.18.1 (#13224) 2019-10-15 13:05:51 -07:00
Axel Huebl
dc3a9618a0 ADIOS2: Default no Python (#13220) 
Turn off the python variant by default.
 2019-10-15 14:55:45 -04:00
Andrey Prokopenko
41e7e5693e arborx: update v0.8-beta to v0.8-beta2 (#13143) 
- Require Kokkos with c++14
- Update the case of CMake options
 2019-10-15 11:19:16 +02:00
Andrey Prokopenko
ce5333c1fd kokkos: add cxxstd variant (#13142) 2019-10-15 11:14:37 +02:00
Tim Haines
27a339eeb2 Add version 0.177 of elfutils (#13129) 
* Add version 0.177

* Fix spacing
 2019-10-14 22:22:11 -07:00
t-karatsu
8f69c9d334 ntpoly: Define module directry when compiling with Fujitsu compiler. (#13120) 
* ntpoly: Define module directry when compiling with Fujitsu compiler.

* Delete quotes.
 2019-10-14 22:20:52 -07:00
Massimiliano Culpo
5cd28847e8 filter_file uses "surrogateescape" error handling (#12765) 
From Python docs:
--
'surrogateescape' will represent any incorrect bytes as code points in
the Unicode Private Use Area ranging from U+DC80 to U+DCFF. These
private code points will then be turned back into the same bytes when
the surrogateescape error handler is used when writing data. This is
useful for processing files in an unknown encoding.
--

This will allow us to process files with unknown encodings.

To accommodate the case of self-extracting bash scripts, filter_file
can now stop filtering text input if a certain marker is found. The
marker must be passed at call time via the "stop_at" function argument.
At that point the file will be reopened in binary mode and copied
verbatim.

* use "surrogateescape" error handling to ignore unknown chars
* permit to stop filtering if a marker is found
* add unit tests for non-ASCII and mixed text/binary files
 2019-10-14 20:35:14 -07:00
Greg Becker
3f46f03c83
bugfix: install --only dependencies works in env (#13090) 
* bugfix: install --only dependents works in env

includes regression testing
 2019-10-14 17:50:38 -07:00
Satish Balay
a63e64f1c4
py-petsc4py: add version 3.12.0 (#13209) 
* py-petsc4py: add version 3.12.0

* fix typo wrt maintainer
 2019-10-14 15:27:28 -05:00
William F Godoy
dafee9df31 Complete cleanup of the adios2 package configuration (#13107) 
Provide up to date specs for build options
Remove non-production versions
Format using autopep8 and flake8
Separate cmake options in adios2 2.4.0 version
Keep default as True as much as possible
Support for Python 2 and 3 for adios2 versions <= 2.4.0
Starting v2.5.0 only Python 3 is supported
Addressing review suggestions
 2019-10-14 12:47:55 -07:00
Hadrien G
be8f8856ce New ACTS versions (#12484) 
* Add new ACTS releases

* Update ACTS dependency requirements

* We can actually be more specific here

* The material plugin is gone as of ACTS v0.10.0

* Add 0.10.4 release

* Remove material mapping plugin

It was merged into core as of 0.10.x, and given ACTS' youth it is unlikely to have actual users at this point in time.
 2019-10-14 14:01:53 -05:00
wspear
48b7370265 py-pymongo: added new package at version 3.9.0 (#13132) 2019-10-14 20:57:54 +02:00
wspear
8a1e5f68f4 py-alembic: fixed missing dependencies. (#13127) 2019-10-14 10:53:01 +02:00
Jeffrey Salmond
2bb1bae2ae dialign: added new package at version 2.2.1 (#13130) 
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-10-14 10:49:31 +02:00
Justin S
c851cfd122 py-smart-open: new package at 1.8.4 (#13135) 2019-10-14 10:42:49 +02:00
wspear
bdcf9ba5cd py-python-memcached: added new package at version 1.59 (#13133) 
* Added package py-python-memcached, a dependency of python-oauth2

* Fixed line lengths
 2019-10-14 10:35:41 +02:00
wspear
04af0eb5a2 py-redis: added new package at version 3.3.8 (#13134) 2019-10-14 10:34:37 +02:00
Adam J. Stewart
27ad28e51a
Add py-kiwisolver 1.1.0 (#13170) 2019-10-13 22:26:49 -07:00
Satish Balay
846daa0404 amrex: add version 19.10 (#13206) 2019-10-13 19:57:11 -05:00
Satish Balay
20c2fa62aa slepc: use spack specified python in configure (#13207) 2019-10-13 19:56:27 -05:00
Satish Balay
1f29785b88 omega-h: add version 9.29.0 (#13208) 2019-10-13 19:54:41 -05:00
Adam J. Stewart
ce6bf5fba1
Add apr-util 1.6.1 (#13145) 2019-10-13 19:52:58 -05:00
Adam J. Stewart
c121ddb300
Add apr 1.7.0 (#13146) 2019-10-13 19:52:40 -05:00
Adam J. Stewart
7b21ac3188
Add bison 3.4.2 (#13147) 2019-10-13 19:52:10 -05:00
Adam J. Stewart
30c5f88255
Add freetype 2.10.1 (#13149) 2019-10-13 19:51:53 -05:00
Adam J. Stewart
518a7c5bb9
Add libpng 1.6.37 (#13153) 2019-10-13 19:51:04 -05:00
Adam J. Stewart
b3fcfc1cb2
Add lz4 1.9.2 (#13155) 2019-10-13 19:50:44 -05:00
Adam J. Stewart
48cd455cc1
Add mercurial 5.1.2 (#13156) 2019-10-13 19:50:19 -05:00
Adam J. Stewart
e5d1810bec
Add subversion 1.12.2 (#13158) 2019-10-13 19:49:53 -05:00
Adam J. Stewart
143afbd3a0
Add py-attrs 19.2.0 (#13163) 2019-10-13 19:49:29 -05:00
Adam J. Stewart
4b2b548981
Add py-cython 0.29.13 (#13166) 2019-10-13 19:49:07 -05:00
Adam J. Stewart
2884a862e8
Add py-docutils 0.15.2 (#13167) 2019-10-13 19:47:25 -05:00
Adam J. Stewart
83a96755ef
Add py-joblib 0.14.0 (#13169) 2019-10-13 19:47:07 -05:00
Adam J. Stewart
e72c20bc47
Add py-more-itertools 7.2.0 (#13171) 2019-10-13 19:46:13 -05:00
Adam J. Stewart
d61743561b
Add py-pillow 6.2.0 (#13175) 
* Add py-pillow 6.2.0

* Flake8 fix
 2019-10-13 19:45:23 -05:00
Adam J. Stewart
ec3b891714
Add py-py 1.8.0 (#13177) 2019-10-13 19:44:08 -05:00
Adam J. Stewart
f7b3524765
Add py-pyflakes 2.1.1 (#13178) 2019-10-13 19:43:50 -05:00
Adam J. Stewart
1276a182b6
Add py-pygments 2.4.2 (#13179) 2019-10-13 19:43:34 -05:00
Adam J. Stewart
8c2096aac5
Add py-pyparsing 2.4.2 (#13180) 2019-10-13 19:43:14 -05:00
Adam J. Stewart
d6f6c41d58
Add py-pytz 2019.3 (#13182) 2019-10-13 19:42:55 -05:00
Adam J. Stewart
2835e9bf17
Add py-setuptools-scm 3.3.3 (#13183) 2019-10-13 19:42:35 -05:00
Adam J. Stewart
ea4f9ebbde
gmp: fix make check on catalina (#13201) 2019-10-12 20:21:45 -05:00
Adam J. Stewart
08d448bc54
mpfr: fix make check on catalina (#13200) 2019-10-12 20:21:23 -05:00
Adam J. Stewart
41e0b069d7
Fix external numpy package support (#13197) 2019-10-12 20:21:03 -05:00
Adam J. Stewart
3df6b05c04
Add py-setuptools 41.4.0 (#13184) 2019-10-12 20:20:41 -05:00
Adam J. Stewart
ebfd06d248
Add py-pytest 5.2.1 (#13181) 2019-10-12 20:18:31 -05:00
Adam J. Stewart
328583decc
Add py-pluggy 0.13.0 (#13176) 2019-10-12 20:14:12 -05:00
Adam J. Stewart
2ced690efb
Add py-pandas 0.25.1 (#13174) 2019-10-12 20:12:41 -05:00
Adam J. Stewart
50e9dc5e2e
Add py-packaging 19.2 (#13173) 2019-10-12 20:12:19 -05:00
Adam J. Stewart
101c287e7b
Add py-numexpr 2.7.0 (#13172) 2019-10-12 20:11:57 -05:00
Adam J. Stewart
db4d06f953
Add py-importlib-metadata 0.23 (#13168) 2019-10-12 20:08:33 -05:00
Adam J. Stewart
1d7eab10ac
Add py-certifi 2019.9.11 (#13165) 2019-10-12 20:05:00 -05:00
Adam J. Stewart
a59e77e374
Add missing test dependency to py-bottleneck (#13164) 2019-10-12 20:04:34 -05:00
Adam J. Stewart
1078dfb6cc
Add py-atomicwrites 1.3.0 (#13162) 2019-10-12 20:03:01 -05:00
Adam J. Stewart
b18e4ad142
Add missing libiconv dependency to wget (#13161) 2019-10-12 20:02:41 -05:00
Adam J. Stewart
7a43817205
Add missing gettext dependency to watch (#13160) 2019-10-12 20:02:24 -05:00
Adam J. Stewart
6beb5da497
Fix valgrind concretization on macOS (#13159) 2019-10-12 20:02:05 -05:00
Adam J. Stewart
22e9aafe5f
Add SCons 3.1.1 (#13157) 2019-10-12 20:00:28 -05:00
Adam J. Stewart
73b2b2a70f
Add LLVM OpenMP 9.0.0 (#13154) 2019-10-12 19:57:36 -05:00
Adam J. Stewart
94d57446c7
Add libjpeg-turbo 2.0.3 (#13152) 2019-10-12 19:55:44 -05:00
Adam J. Stewart
1e2754f0d2
Add help2man 1.47.11 (#13151) 2019-10-12 19:55:14 -05:00
Adam J. Stewart
681c5bcceb
Add graphviz 2.42.2 (#13150) 2019-10-12 19:54:46 -05:00
Adam J. Stewart
0a8be4e311
Add cmake 3.15.4 (#13148) 2019-10-12 19:52:47 -05:00
Adam J. Stewart
18ab375968
Add utf8proc package (#13144) 2019-10-12 19:40:05 -05:00
Nichols A. Romero
ebb5ce4b69 F18 Oct2019 Minor Update (#13192) 
* Minor clean-up of package information.

* Add variants, fix dependencies, and add conflicts for compilers that do not support C++17.

* Correct dependency type for CMake.
 2019-10-12 12:30:43 -05:00
Todd Gamblin
64bdc3251f checksums: enforce that all mainline packages use sha256 checksums 
- Add a test that verifies checksums on all packages

- Also add an attribute to packages that indicates whether they need a
  manual download or not, and add an exception in the tests for these
  packages until we can verify them.
 2019-10-12 07:19:43 -07:00
Todd Gamblin
8cbd349cb4 checksums: fix packages that needed new download locations 
Some packages had incorrect checksums because they needed to be
downloaded from a new place or the package needed tweaking somehow.
These packages to sha256 and the new checksums have been verified by
fetching over https.
 2019-10-12 07:19:43 -07:00
Todd Gamblin
45a9cfcdd7 packages: remove packages that are no longer fetchable 
These packages have either been retired or are no longer retrievable from
any site we can find. They also aren't needed by other packages, so we're
removing them from Spack.

- allinea-reports: is now arm performance reports
- globus-toolkit: retired, globus is now a paid service.
- uberftp: used globus-toolkit, github site is retired.
- mpiblast: site is dead; no longer fetchable.
- py-mxnet: site and github are gone
- soap2, soapindel, soapsnp: site is gone, unfetchable
- arlecore: could not verify md5 securely
 2019-10-12 07:19:43 -07:00
Todd Gamblin
00f91ab22b checksums: Remove or fix up unfetchable or unverifiable md5 versions 
This commit either removes remaining md5 checksums, or it replaces them
with sha256 checksums verified by fetching over https.
 2019-10-12 07:19:43 -07:00
Todd Gamblin
62927654dd checksums: use sha256 checksums everywhere 
We'd like to use a consistent checksum scheme everywhere so that we can:

    a) incorporate archive checksums into our specs and have a
       consistent hashing algorithm across all specs.

    b) index mirrors with a consistent type of checksum, and not one that
       is dependent on how spack packages are written.

- [x] convert existing md5, sha224, sha512, sha1 checksums to sha256
 2019-10-12 07:19:43 -07:00
Matthew LeGendre
87fa7c15fc Add adiak package, version 0.1.1 2019-10-11 21:22:33 -07:00
Massimiliano Culpo
fd97f5c491
Fixed constraints in recipes for packages that depends on fftw (#13125) 2019-10-11 07:55:15 +02:00
Nichols A. Romero
884964d551 Fix f18 install method (#13123) 
* Install method is broken and not needed. Built-in install method works fine. Just delete.

* Change version to master.
 2019-10-10 21:52:29 -05:00
Adam J. Stewart
7af8c206ac
Add patches and missing dependency to bash (#13084) 2019-10-10 12:48:49 -05:00
Adam J. Stewart
c131a725af
Add mpfr 4.0.2 (#13091) 2019-10-10 12:48:32 -05:00
Adam J. Stewart
06dffaefed
Add tar 1.32 (#13099) 2019-10-10 12:48:16 -05:00
Jannek Squar
02564ef4ab sublime-text: New version, adapt install process (#13074) 
* Added new version, reworked installation process

* Removed explicit addition to PATH
 2019-10-10 12:13:00 -05:00
Adam J. Stewart
e925dbcefe
Add expat 2.2.9 (#13085) 2019-10-10 12:10:48 -05:00
Adam J. Stewart
f940e8616c
Add gettext 0.20.1 (#13086) 2019-10-10 12:10:19 -05:00
Adam J. Stewart
4d2b300da0
Add isl 0.21 (#13087) 2019-10-10 12:10:03 -05:00
Adam J. Stewart
15d7e2efd5
Add libiconv 1.16 (#13088) 2019-10-10 12:09:46 -05:00
Adam J. Stewart
c570c09cbf
Add libsigsegv 2.12 (#13089) 2019-10-10 12:09:28 -05:00
Adam J. Stewart
db8178d99a
Add latest openssl releases (#13092) 2019-10-10 12:09:02 -05:00
Adam J. Stewart
ace11d857f
Add latest Perl releases (#13093) 2019-10-10 12:08:40 -05:00
Adam J. Stewart
f35c845330
Add pkgconf 1.6.3 (#13094) 2019-10-10 12:08:19 -05:00
Adam J. Stewart
0cf6980437
Add readline 8.0 (#13095) 2019-10-10 12:07:48 -05:00
Adam J. Stewart
4a5bdd1afd
gdbm: https -> http (#13096) 2019-10-10 12:07:24 -05:00
Adam J. Stewart
01b87259e2
ncurses: https -> http (#13097) 2019-10-10 12:07:05 -05:00
Adam J. Stewart
f904e47c4e
Add sqlite 3.30.0 (#13098) 2019-10-10 12:06:44 -05:00
Satish Balay
dd64bdc313 hypre: add compatibility patch for petsc/mfem build failures (#13116) 2019-10-10 09:11:15 -05:00
wspear
a042a7e91e Added new versions to py-tornado (#13080) 
* Added new versions to py-tornado

* Removed all but the latest new version
 2019-10-10 09:06:01 -05:00
Matthias Wolf
e69efded32 py-line-profiler: add 2.1.2, re-run cython if needed (#13102) 
* py-line-profiler: add 2.1.2, re-run cython if needed

See rkern/line_profiler#166.

* Update var/spack/repos/builtin/packages/py-line-profiler/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-10-10 11:34:50 +02:00
Rob Latham
d93cacfa5c libfabric: new upstream release 1.8.1 (#13053) 2019-10-09 22:24:17 -05:00
wspear
c8289fcd90 Added latest versions of SQLAlchemy 1.3.X, 1.2.X and 1.1.X (#13078) 
* Added latest versions of SQLAlchemy 1.3.X, 1.2.X and 1.1.X

* Added missing dependencies
 2019-10-09 22:23:55 -05:00
wspear
e7e67fdfec Added latest versions to py-traitlets (#13079) 
* Added latest versions to py-traitlets

* Added missing dependencies
 2019-10-09 22:23:33 -05:00