Commit graph

4841 commits

Author SHA1 Message Date
Christoph Junghans
b3f678c1c0
gasnet: add 1.30.0 (#6167)
* gasnet: add 1.30.0

* gasnet: expose more options as variants

* gasnet: change defaults
2017-11-08 19:43:13 -07:00
Audrey Thoma
877bee3cb5 guidance: new package (#6079)
* guidance: new package

* not really fixed yet

* adding loop

* fixing url

* dang typos
2017-11-08 14:07:13 -07:00
lingnanyuan
dd3a6d7f18 r-ampliqueso: Create new package. (#6132) 2017-11-08 14:05:53 -07:00
Yifan Zhu
96f70606e8 r-tiff: created new package (#6134) 2017-11-08 14:05:33 -07:00
lingnanyuan
f73b409968 r-anaquin: Create new package. (#6138) 2017-11-08 14:05:17 -07:00
lingnanyuan
2cba0d4d5f r-qvalue: Create new package. (#6137) 2017-11-08 14:05:00 -07:00
baip
4273ebac3c libxsmm: add libs property (#6193) 2017-11-08 14:04:26 -07:00
lingnanyuan
17b9a479b6 r-aneufinderdata: Create new package. (#6192) 2017-11-08 14:03:35 -07:00
lingnanyuan
bb619aa091 r-aneufinder: Create new package. (#6191) 2017-11-08 14:03:22 -07:00
Christoph Junghans
d8db861fec
flecsi: fix build (#6168) 2017-11-08 14:03:05 -07:00
lingnanyuan
04f32377b2 r-rhtslib: Create new package. (#6164) 2017-11-08 14:02:12 -07:00
Audrey Thoma
3fcc911737 kraken: new package (#6163) 2017-11-08 14:01:55 -07:00
Audrey Thoma
743a87abb3 fpc: new package (#6162) 2017-11-08 14:01:31 -07:00
lingnanyuan
6556a5c914 r-cowplot: Create new package. (#6190) 2017-11-08 13:58:57 -07:00
Yifan Zhu
5f70d578ec r-maldiquant: created new package (#6188) 2017-11-08 13:58:43 -07:00
lingnanyuan
860834e094 r-reordercluster: Create new package. (#6187) 2017-11-08 13:58:21 -07:00
Yifan Zhu
605c8e65b3 r-mzid: created new package (#6186) 2017-11-08 13:58:04 -07:00
Yifan Zhu
98baf49ba6 r-xde: created new package (#6185) 2017-11-08 13:57:46 -07:00
lingnanyuan
3943bc945b r-ggdendro: Create new package. (#6184) 2017-11-08 13:57:30 -07:00
lingnanyuan
241e1b56b5 r-dnacopy: Create new package. (#6183) 2017-11-08 13:57:15 -07:00
Yifan Zhu
92a582d5f8 r-mergemaid: created new package (#6182) 2017-11-08 13:56:59 -07:00
lingnanyuan
146db9adef r-bamsignals: Create new package. (#6181) 2017-11-08 13:56:34 -07:00
Yifan Zhu
87aafeb78a r-xmapbridge: created new package (#6180) 2017-11-08 13:56:15 -07:00
Sergey Kosukhin
c7a855ba57 Missing dependency for 'cdo'. (#6175) 2017-11-08 13:55:57 -07:00
baip
ed00757265 gcc: add 5.5.0 (#6171) 2017-11-08 20:27:08 +01:00
vishalkenchan
392929ba77 lammps: add more packages (#6174)
* lammps : adding new varients and dependencies therein

* Update package.py

* removing trailing whitespaces
2017-11-08 09:01:14 -07:00
Matthew Scott Krafczyk
00d48e60bf Fix for nghttp2 installation (#5904)
nghttp2 depends on python, and requires the install directory to exist,
and contain the python module directory which it will eventually
install the python modules into.
2017-11-07 15:59:15 -08:00
James Dickson
841d42b308 TyphonIO: new package + Updated MACSio package (#6177) 2017-11-07 13:13:06 -07:00
Audrey Thoma
8bae192d5c repeatmasker: new package (#6108) 2017-11-06 17:27:42 -07:00
Michael Kuhn
ca73103dac Introduce static_to_shared_library function (#6092)
The static_to_shared_library function takes an existing static library
and produces a shared library based on it.
2017-11-06 17:21:46 -07:00
Satish Balay
dc78e60c83 trilinos: update hdf5 dependency to use 'hdf5+hl' (#6025)
* trilinos: update hdf5 dependency to use 'hdf5+hl'

Without this change - I get the following error [triggered by 161dca6d5 c9810f808 changes]

$ ./bin/spack install trilinos+hdf5
==> Error: An unsatisfiable variant constraint has been detected for spec:

    hdf5@1.10.1%gcc@7~cxx~debug~fortran~hl+mpi+pic+shared~szip~threadsafe arch=linux-fedora27-x86_64

while trying to concretize the partial spec:

    netcdf+mpi
        ^m4
        ^mpich@3.3a2%gcc@7 device=ch3 +hydra netmod=tcp +pmi+romio~verbs arch=linux-fedora27-x86_64
        ^zlib@1.2.11%gcc@7+optimize+pic+shared arch=linux-fedora27-x86_64

netcdf requires hdf5 variant +hl, but spec asked for ~hl

* fix flake8 warning
2017-11-06 13:03:06 -08:00
Luigi Calori
f0d33df3a9 some missing X11 "*proto" dependencies (#6158)
* fix xinput deps

* adding other x11 proto missing deps, see #6157
2017-11-06 13:02:05 -08:00
Satish Balay
436ebc4490 petsc: update petsc dependency on superlu-dist (#6159) 2017-11-06 12:52:10 -08:00
Yifan Zhu
cd4d26705e Bioconductor package url change (#5797) 2017-11-06 11:17:59 -07:00
Michael Kuhn
450f2fa034 likwid: Use external lua if possible (#6009) 2017-11-06 11:14:34 -07:00
Douglas Duckworth
47b15feec3 added new package - MotionCor2 (#6151) 2017-11-06 11:09:46 -07:00
Denis Davydov
f538b7ac3e dealii: make sure bundled libs are not used (#6106) 2017-11-06 12:38:59 +01:00
Besnard Jean-Baptiste
84c6fea32e Graphviz : Add a GTS variant (#6149)
Enable support for the GNU Triangulated Surface Library

	- New variant +gts for graphviz
	- Optionnal dependency for GTS (already packaged)
2017-11-05 16:55:44 -08:00
Douglas Duckworth
ccc51cea7d added relion v 2.1 (#6023)
* added relion v 2.1

* relion 2.1 - misssed comma

* relion now pulling from master branch - removed 2.03 - added cuda 8 as dependency given 9 does not yet work with relion per https://github.com/3dem/relion/issues/296
2017-11-05 15:01:21 -08:00
Ben Boeckel
22df09315f Re-add list_url for all R packages (#6110)
* r-igraph: find old packages in the archive

Fixes #6104.

* r-irlba: find old packages in the archive

Fixes #6101.

* r-lazyeval: find old packages in the archive

Fixes #6102.

* packages: set list_url for all packages hosted on CRAN

* packages: consistently use the CRAN archive URLs
2017-11-05 13:42:24 -08:00
Adam Moody
2a8c97d440 dtcmp: add v1.1.0 (#6146) 2017-11-05 09:25:03 -08:00
Satish Balay
d34d0d6cbc petsc: update to version 3.8.1 (#6150)
* petsc: update to version 3.8.1

* petsc: add in conflict between petsc-3.8.0 & mkl
2017-11-05 09:24:42 -08:00
Axel Huebl
5d9dd24daa ISAAC 1.3.3 (#6152)
Add a new release of ISAAC.
2017-11-05 09:24:18 -08:00
Todd Gamblin
05fa302655
Replace github.com/llnl/spack with github.com/spack/spack (#6142)
We moved to a new GitHub org! Now make the code and docs reflect that.
2017-11-04 17:08:04 -07:00
vishalkenchan
386e0af089 add rol variant (#6105) 2017-11-04 12:14:46 -07:00
Yifan Zhu
9d234c4f8e r-yapsa: created new package (#6121) 2017-11-03 14:21:00 -06:00
Yifan Zhu
fb1160d052 r-keggrest: created new package (#6120) 2017-11-03 14:20:36 -06:00
lingnanyuan
3921948b03 r-statmod: Create new package. (#6119) 2017-11-03 14:20:14 -06:00
lingnanyuan
b204c7e793 r-deseq: Create new package. (#6118) 2017-11-03 14:19:38 -06:00
lingnanyuan
f91c25ddee r-samr: Create new package. (#6117) 2017-11-03 14:19:16 -06:00