Commit graph

22993 commits

Author SHA1 Message Date
Robert Pavel
3f7c111e29
Added ML Suite to ECP Proxy App Suite (#22728) 2021-04-01 17:52:17 -07:00
Shintaro Iwasaki
7e6048fef5
argobots: add Argobots 1.1 and 1.0.1 (#22729) 2021-04-01 18:49:11 -06:00
Jose E. Roman
49b222442f
Update SLEPc and slepc4py to version 3.15 (#22714)
Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2021-04-01 17:38:47 -07:00
AMD Toolchain Support
252f42f115
Fix for static library export issue in blis package (#22673) 2021-04-01 16:57:46 -07:00
Amiya Maji
73a4a5d394
gdal package needs to import the 'os' module (#22731)
* 'gdal+java' build needs to import the 'os' module (line 191).

* Make style-check happy.
2021-04-01 17:52:04 -06:00
Michael Kuhn
c89fa98b16
Fix pkgconfig dependencies (#22702)
pkgconfig is the correct virtual provider.
2021-04-01 23:45:01 +00:00
Simon Bolding
9c139bf7a2
mpark-variant: ICC Patch (#22727)
* Add patch for Intel C++ compiler

- On some machines (in particular MacOSX Catalina), the icpc in some way
utilizes the preprocessor of the associated "developer tools" used by
icpc. This leads to, in some cases, a preprocessor claiming support for
__tuple_element_packs, even though icpc (as of version 21.1) can't
actually parse such code. Just use the MPARK_TUPLE_ELEMENT_PACK impl
with __icc until icpc supports it, to avoid issues with developer tools
that are untested.
- The same patch has been PRed against mpark-variant
2021-04-01 23:15:25 +00:00
mic84
2ae7e25501
amrex: new version 21.04 (#22730) 2021-04-01 14:11:14 -07:00
Elizabeth Fischer
82e97124c8
bugfix: compiler wrappers should handle extra spaces between arguments (#22725)
In the face of two consecutive spaces in the command line, the compiler wrapper would skip all remaining arguments, causing problems building py-scipy with Intel compiler. This PR solves the problem.

* Fixed compiler wrapper in the face of extra spaces between arguments

Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2021-04-01 18:39:06 +00:00
Daniel Arndt
cf1b8dd72b
xSDK: add ArborX (#22619) 2021-04-01 11:59:05 -05:00
iarspider
1e70ee38a2
New version of OpenLoops (#22240)
New version of OpenLoops; new list of processes; update lcg process collection
Add script to scrape openloops website for process list
2021-04-01 17:06:03 +02:00
Nick Forrington
e22b2ff5c9
arm-forge: cleanup and upgrade to forge v21.0 (#22015)
Backwards incompatible cleanup to target single-tarball-per-arch builds
going forwards.

* Replace per-distro versions with new per-arch builds, and add
  url_for_version to avoid specifying per tarball.
* Customise environment setup to avoid adding lib to LD_LIBRARY_PATH.
* Update homepage and licensing URLs.
* Avoid shell interpretation when running textinstall.sh.
* Added NickRF as maintainer.
2021-04-01 15:47:32 +02:00
iarspider
034211f993
Extra environment variables for Qt (#22717) 2021-04-01 12:40:56 +00:00
Chris Richardson
5ed00560cd
Fenicsx package updates for basix install (#22679)
Co-authored-by: Garth N. Wells <gnw20@cam.ac.uk>
2021-04-01 14:35:01 +02:00
Robert Mijakovic
efaa2c160f
py-cython: new version (#22712)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-04-01 14:28:12 +02:00
William Downs
db87f62aa5
gchp: add version 13.0.1 and remove release candidate (#22572) 2021-04-01 14:07:13 +02:00
Rémi Lacroix
67f182bb6d
MUMPS: Various improvements to the package (#22575)
Use `conflicts` directive whenever possible.
This allows failing early when conflicting variants are used.

Do not silently ignore `+parmetis` variant when `~metis`.
Instead throw an error during concretization.

Simplify the "Makefile.inc" generation.
This will make easier to add new variants in the future.
2021-04-01 14:06:22 +02:00
Michael Kuhn
4a059aad17
libfabric: add 1.12.0 (#22694) 2021-04-01 06:01:19 -06:00
Michael Kuhn
76424c1a91
sqlite: add 3.35.3 (#22697) 2021-04-01 13:57:20 +02:00
Michael Kuhn
2556490cb0
leveldb: add 1.23 (#22695) 2021-04-01 13:56:25 +02:00
Michael Kuhn
5a10c6f822
glib: add 2.66.8 (#22691) 2021-04-01 13:44:09 +02:00
Amiya Maji
09dcb16a70
qt: restrict patch to 5.12.7 (#22705) 2021-04-01 04:38:06 +00:00
Michael Kuhn
bfece29858
pkgconf: add 1.7.4 (#22696) 2021-03-31 21:37:02 -07:00
Michael Kuhn
f7d7cbfacf
readline: add 8.1 (#22698) 2021-03-31 21:36:40 -07:00
Michael Kuhn
487ea02044
tar: add 1.34 (#22700) 2021-03-31 21:36:20 -07:00
Michael Kuhn
2922068fdc
curl: add 7.76.0 (#22693) 2021-03-31 21:36:01 -07:00
Anthony J. Zukaitis
1c084cd4dd
Added version patch for 1.4.0 tag on mpark-variant (#22496)
* Added version patch for 1.4.0 tag on mpark-variant

Redirected urls to git and github tags.

* Updated to commit hashes

* Update var/spack/repos/builtin/packages/mpark-variant/package.py

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update var/spack/repos/builtin/packages/mpark-variant/package.py

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>

* Update var/spack/repos/builtin/packages/mpark-variant/package.py

Co-authored-by: Anthony J Zukaitis <zukaitis@lanl.gov>
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-03-31 22:35:00 -06:00
Michael Kuhn
4f2a972c2f
util-linux(-uuid): add 2.36.2 (#22701) 2021-03-31 21:32:07 -07:00
takanori-ihara
3e532db04d
fujitsu-ssl2: Add the headers method (#22629)
* fujitsu-ssl2: Add the headers method

* fujitsu-ssl2: Fix for comments

* fujitsu-ssl2: Fix for comments
2021-04-01 03:59:10 +00:00
Greg Becker
7daf582357 CachedCMakePackage for using *.cmake initial config files (#19316)"
Original commit message:
This feature of CMake allows packages to increase reproducibility, especially between
Spack- and manual builds. It also allows packages to sidestep certain parsing bugs in
extremely long ``cmake`` commands, and to avoid system limits on the length of the
command line.

Adding:
Co-authored by: Chris White <white238@llnl.gov>

This reverts commit c4f0a3cf6c.
2021-03-31 18:38:22 -07:00
Chris White
c4f0a3cf6c Revert "CachedCMakePackage for using *.cmake initial config files (#19316)"
This reverts commit 764c170530.
2021-03-31 18:34:45 -07:00
Sreenivasa Murthy Kolam
3b59af8b2b
Changes to packages for rocm-4.1.0 release (#22687) 2021-04-01 00:30:56 +00:00
Greg Becker
764c170530
CachedCMakePackage for using *.cmake initial config files (#19316)
CachedCMakePackage is a specialized class for packages built using CMake initial cache.

This feature of CMake allows packages to increase reproducibility, especially between
Spack- and manual builds. It also allows packages to sidestep certain parsing bugs in
extremely long ``cmake`` commands, and to avoid system limits on the length of the
command line.
2021-03-31 23:55:19 +00:00
Satish Balay
6242f102fb
petsc@3.15.0, py-petsc4py@3.15.0 (#22688)
* petsc@3.15.0, py-petsc4py@3.15.0

* Update var/spack/repos/builtin/packages/petsc/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-03-31 23:04:23 +00:00
Asher Mancinelli
3205c6f940
Bump HiOp version to v0.4 (#22689) 2021-03-31 22:50:14 +00:00
Adam J. Stewart
315124e219
py-matplotlib: add v3.4.1 (#22680) 2021-03-31 16:01:16 -06:00
Todd Gamblin
cf9adfd748
hotfix: make ifx work with autoconf <= 2.69 in Spack (#22683)
Autoconf before 2.70 will erroneously pass ifx's -loopopt argument to the
linker, requiring all packages to use autoconf 2.70 or newer to use ifx.

This is a hotfix enabling ifx to be used in Spack. Instead of bothering
to upgrade autoconf for every package, we'll just strip out the
problematic flag if we're in `ld` mode.

- [x] Add a conditional to the `cc` wrapper to skip `-loopopt` in `ld`
      mode. This can probably be generalized in the future to strip more
      things (e.g., via an environment variable we can constrol from
      Spack) but it's good enough for now.

- [x] Add a test ensuring that `-loopopt` arguments are stripped in link
      mode, but not in compile mode.
2021-03-31 21:47:38 +00:00
Todd Gamblin
a1d9a56a43 specs: remove "or ''" from Spec comparisons
Since `lazy_lexicographic_ordering` handles `None` comparison for us, we
don't need to adjust the spec comparators to return empty strings or
other type-specific empty types. We can just leverage the None-awareness
of `lazy_lexicographic_ordering`.

- [x] remove "or ''" from `_cmp_iter` in `Spec`
- [x] remove setting of `self.namespace` to `''` in `MockPackage`
2021-03-31 14:39:23 -07:00
Todd Gamblin
01a6adb5f7 specs: use lazy lexicographic comparison instead of key_ordering
We have been using the `@llnl.util.lang.key_ordering` decorator for specs
and most of their components. This leverages the fact that in Python,
tuple comparison is lexicographic. It allows you to implement a
`_cmp_key` method on your class, and have `__eq__`, `__lt__`, etc.
implemented automatically using that key. For example, you might use
tuple keys to implement comparison, e.g.:

```python
class Widget:
    # author implements this
    def _cmp_key(self):
        return (
            self.a,
            self.b,
            (self.c, self.d),
            self.e
        )

    # operators are generated by @key_ordering
    def __eq__(self, other):
        return self._cmp_key() == other._cmp_key()

    def __lt__(self):
        return self._cmp_key() < other._cmp_key()

    # etc.
```

The issue there for simple comparators is that we have to bulid the
tuples *and* we have to generate all the values in them up front. When
implementing comparisons for large data structures, this can be costly.

This PR replaces `@key_ordering` with a new decorator,
`@lazy_lexicographic_ordering`. Lazy lexicographic comparison maps the
tuple comparison shown above to generator functions. Instead of comparing
based on pre-constructed tuple keys, users of this decorator can compare
using elements from a generator. So, you'd write:

```python
@lazy_lexicographic_ordering
class Widget:
    def _cmp_iter(self):
        yield a
        yield b
        def cd_fun():
            yield c
            yield d
        yield cd_fun
        yield e

    # operators are added by decorator (but are a bit more complex)

There are no tuples that have to be pre-constructed, and the generator
does not have to complete. Instead of tuples, we simply make functions
that lazily yield what would've been in the tuple. If a yielded value is
a `callable`, the comparison functions will call it and recursively
compar it. The comparator just walks the data structure like you'd expect
it to.

The ``@lazy_lexicographic_ordering`` decorator handles the details of
implementing comparison operators, and the ``Widget`` implementor only
has to worry about writing ``_cmp_iter``, and making sure the elements in
it are also comparable.

Using this PR shaves another 1.5 sec off the runtime of `spack buildcache
list`, and it also speeds up Spec comparison by about 30%. The runtime
improvement comes mostly from *not* calling `hash()` `_cmp_iter()`.
2021-03-31 14:39:23 -07:00
Todd Gamblin
fd12cba18b specs: speed up traversal by avoiding redundant canonicalization 2021-03-31 14:39:23 -07:00
Rémi Lacroix
bb60dbd2ad
OpenFOAM-org: Add version 2.3.1. (#22473) 2021-03-31 23:19:37 +02:00
Rémi Lacroix
772dd7bcb2
Molden: Add new versions (#22685)
Fix the download URL and add new versions.
2021-03-31 13:28:06 -07:00
Scott McMillan
25747a037a
Do not set CPATH in nvhpc package (#22652)
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-03-31 12:19:17 -06:00
Jungwon Kim
2196c24e97
papyrus: setup environment variables #22681 (#22682) 2021-03-31 11:08:18 -07:00
kurtsansom
904867703e
fix: modify for change in meson options (#22678) 2021-03-31 11:25:18 -06:00
Glenn Johnson
1ed7762327
new package: py-uproot (#22658) 2021-03-31 10:57:34 -05:00
Michael Kuhn
bee9e34b50
wget: add 1.21 (#22675) 2021-03-31 10:55:15 -05:00
AMD Toolchain Support
1144666c09
AOCC support for QE 6.7 (#22664)
Adding qe_6.7_aocc_support
2021-03-31 09:34:21 -06:00
yellowhat
802f5afac0
hpl: FIX ^intel-oneapi-mkl (#22674) 2021-03-31 08:17:27 -07:00
AMD Toolchain Support
9a453b2e74
adding AOCC support for CP2K 7.1 (#22641) 2021-03-31 13:22:04 +02:00