Commit graph

7749 commits

Author SHA1 Message Date
Kelly (KT) Thompson
b2b91a1f00 Random123 - provide a patch to fix compiles with IBM XL (#11028)
* Newer versions of IBM XL no longer define `__xlC__`, but define `__ibmxl__`
  instead.  This one-line patch fixes this problem in Random123.
* This patch was also provided to the Random123 maintiners
  (Random123@DEShawResearch.com). I don't expect a new release from them for a
  while, so I believe that this patch is the correct path forward (for now).
2019-03-28 17:20:28 -05:00
Satish Balay
06e82edf15
hypre: add a modified superlu-dist patch for @:2.14.0 (#11032) 2019-03-28 14:57:51 -05:00
Peter Scheibel
a6511fbafc Consistent patch ordering (#10879)
* preserve the order in which patches are applied by packages (in spite of grouping them by 'when')

* add tests confirming patch order
2019-03-28 11:25:44 -07:00
Peter Scheibel
99f35c3338 spack chain (#8772)
* initial work to make use of an 'upstream' spack installation: this uses the DB of the upstream installation to check if a package is installed

* need to query upstream dbs when adding new record to local db

* prevent reindexing upstream DBs

* set prefix on specs read from DB based on path stored in install record

* check that Spack does not install packages that are recorded as installed in an upstream db

* externals do not add their path to install records - need to use 'external_path' to get path of upstream externals

* views need to check for upstream installations when linking metadata

* package and spec now calculate upstream installation properties on-demand themselves rather than depending on concretization to set these properties up-front. The added tests for upstream installations don't work with this new strategy so they need to be updated

* only refresh modules for local specs (not those in upstream packages); optionally generate local module files for packages installed upstream

* when a user tries to locate a module file for a package installed upstream, tell them to use the upstream spack instance to locate it

* support recursive upstream databases (allow upstream databases to use their own upstream databases)

* separate upstream config into separate file with its own schema; each entry now also includes a name

* metadata_dir is no longer customizable on a per-instance basis for YamlDirectoryLayout

* treat metadata_dir as an instance variable but dont set it from kwargs; this follows several other hardcoded variables which must be consistent between upstream and downstream DBs. Also update DirectoryLayout.metadata_path to work entirely with Spec.prefix, since Spec.prefix is set from the DB when available (so metadata_path was duplicating that logic)
2019-03-27 13:06:46 -07:00
Elsa Gonsiorowski, PhD
8a4e762bec libyogrt package: add versions, scheduler support (#10884)
* Add latest libyogrt versions
* Add url_for_version to handle differing url formats for different
  versions
* Add 'scheduler' variant to configure scheduler. Currently only
  slurm can be installed with Spack. A value of 'system' indicates
  to use the scheduler installed on the system
2019-03-27 10:25:31 -07:00
Michael Kuhn
7df70154dd lzo package: add version 2.10 (#11015) 2019-03-26 15:40:48 -05:00
Michael Kuhn
44311da0de c-blosc package: add version 1.16.3 (#11014) 2019-03-26 15:40:24 -05:00
Justin Stanley
35d439b1f7 beast1 package: add version 1.10.4, use url_for_version (#11009) 2019-03-26 15:39:42 -05:00
Gregory Lee
d2bd4f86dd py-netcdf package: add py-cftime dependency (#11005) 2019-03-26 15:39:10 -05:00
Eric Martin
69bd67385c py-xopen: Add version 0.5.0 (#10995) 2019-03-26 15:32:09 -05:00
Mark W. Krentel
675bb23431 intel-xed package: add versions 2019.03.01 and develop (#10987)
Also add conflicts for PPC
2019-03-26 15:31:28 -05:00
ajw1980
7a4712b90a New package: py-scikit-optimize (#10973) 2019-03-26 15:10:35 -05:00
ajw1980
48a8ee0363 New package: py-pyodbc (#10972) 2019-03-26 15:09:55 -05:00
ajw1980
99a51e7ed1 New package: py-luigi (#10970) 2019-03-26 15:08:20 -05:00
ajw1980
40121eddd9 Py-jupyter package: dependency fixes (#10966)
* py-prompt-toolkit: Add newer version for required for newer
  py-ipython versions
* py-ipykernel:
  * Add newer py-ipykernel version
  * Depend on py-setuptools so a python egg isn't attempted to be
    built
  * Update dependency for newer py-ipykernel versions
* py-jupyter-console: Remove py-prompt-toolkit dependency since it is
  picked up in py-ipython
* py-ipython:
  * Add missing py-backcall dependency
  * Adjust py-prompt-toolkit dependencies for newer versions of
    ipython
* py-jupyter-notebook: Require newer version of py-ipykernel since
  jupyter is broken with previous versions
2019-03-26 15:05:39 -05:00
ajw1980
9437cf88f0 node-js package: Depend on zlib when +zlib (#10965) 2019-03-26 14:43:30 -05:00
ajw1980
994b8afedc py-numba package: Depend on py-setuptools so an egg isn't built (#10964) 2019-03-26 14:42:57 -05:00
ajw1980
4b76602914 py-dateutil package: add version 2.7.5 (#10961) 2019-03-26 14:42:31 -05:00
ajw1980
6a6a51922f py-pytz package: add version 2018.4 (#10959) 2019-03-26 14:41:09 -05:00
Justin M Wozniak
4719bf25dd r-rinside package: add version 0.2.15 (#10949) 2019-03-26 14:37:49 -05:00
Brian Spilner
308a39eca3 ruby package: add version 2.6.2 (#10945) 2019-03-26 14:34:33 -05:00
Andrew Gaspar
1e6da47b4e Kokkos package: pthreads feature and new kokkos versions (#10943) 2019-03-26 14:31:48 -05:00
Chris Green
670ef9bd7c nix package: improve dependencies based on prerequisites from manual. (#10927) 2019-03-26 13:39:40 -05:00
Michael Kuhn
63ddc44db6 ior package: Add patch to fix 3.2.0 with hdf5 (#10923) 2019-03-26 13:36:54 -05:00
fcannini
f08c9aa601 quantum-espresso: Enable EPW installation (#10637) 2019-03-26 13:33:10 -05:00
Chris Green
763549fe7c mysql: Support client-only, cxxstd and more versions (#10911)
* add cxxstd variant
* add CMake constraints based on platform/version
* add older versions
* update boost dependency version constraints (which are closely
  tied to mysql version) and update boost cxxstd choice to be
  the same as the cxxstd chosen for mysql
* add client-only support (including a patch for 5.5.x)
* record the mysql package as a provider of the mysql-client virtual
2019-03-26 13:19:06 -05:00
Chris Green
1bd8c0c460 boost: Fix build of versions < 1.62.0 (#10910)
Improve management of the Fiber library and C++ standard support:

* Remove Fiber from list of libraries to build
* Improve variant management for Fiber; add variants for Context and
  Coroutine libraries.
* Add known conflict with C++17 for boost < 1.63.0
* Remove C++ standard "default" option, which left the choice of
  C++ standard to the compiler used to build boost
2019-03-26 12:50:06 -05:00
Michael Kuhn
8434e7803d lz4: Add 1.8.3 (#11013) 2019-03-26 15:34:25 +01:00
Michael Kuhn
58d186fc00 zstd: Add 1.3.8 (#11012) 2019-03-26 15:33:26 +01:00
clellsolomon
31d7df7860 ninja-fortran package: add newer versions (#10921) 2019-03-25 20:38:45 -05:00
bfovet
cc2ff82027 New package: MMG (#10902) 2019-03-25 20:24:40 -05:00
Dustin Lagoy
14acfb65c4 netcdf-cxx package: Add optional netCDF4 support (#10899) 2019-03-25 20:22:15 -05:00
Chris Green
17da285cfb range-v3 package: Add notes, conflicts and doc dependencies. (#10887)
* record conflicts with compiler versions which don't provide
  required c++ standard support
* add doxygen (build) dependency
* add note that range-v3 is header-only as of 0.3.6 and update
  package description
2019-03-25 20:10:01 -05:00
Chris Green
a4bf8de09b gl2ps: add missing dependencies and doc variant. (#10886)
Makes building of documentation optional.
2019-03-25 20:04:33 -05:00
Dustin Lagoy
4c68d2e14e py-netcdf4: avoid using system installs of dependencies (#10885)
Use environment variables to point setup.py to Spack installations
of hdf5/netcdf
2019-03-25 20:03:02 -05:00
Chris Green
c124b1f471 postgresql package: build enhancements. (#10877)
We add new variants to handle readline vs libedit, a client-only
build and install, and bindings to TCL, Python and Perl. We also add
new versions and the ability to detect remote versions not otherwise
dealt with.
2019-03-25 19:51:51 -05:00
simo-tuomisto
6478a32598 New package: elmer-fem (#10860)
Elmer finite element method solver; builds Elmer, ElmerICE and
contributed solvers with MPI support.
2019-03-25 19:47:15 -05:00
Omar Padron
bf03edb51b LLVM package: disable CUDA (#10858)
This avoids using a system-installed CUDA package. In the future a
variant can be added to allow using Spack-installed CUDA, but for
now CUDA support is always disabled.
2019-03-25 19:43:18 -05:00
Brian Van Essen
a88b540723 Conduit package: add option to build with hdf5 versions > 1.8 (#10913)
Added a variant to allow conduit to build with newer versions of
HDF5.  Set the default for the variant to prefer compatibility mode
with HDF5 v1.8
2019-03-25 12:26:30 -05:00
Satish Balay
365c17a3d5
xsdk: enable sundials@4.1.0 for xsdk@develop (#10989)
- disable sundials varaiant for dealii and mfem - as they are incomatible with sundials@4.1.0
2019-03-24 22:17:20 -05:00
Satish Balay
8c165494f2
hypre: add superlu-dist variant (#10985)
- add a patch to fix build error with superlu-dist
2019-03-24 22:16:47 -05:00
Satish Balay
d7e984bcf8
amrex: current @develop - and future releases require cmake@3.13 or higher (#10953) 2019-03-24 22:15:49 -05:00
Navdeep Rana
fb946e51a4 Added a package for chapel. (#11002)
* Added a package for chapel.

* flake8 compliance.
2019-03-24 17:18:19 -05:00
Xavier Delaruelle
95a0e9c693 environment-modules: add version 4.2.3 (#11003) 2019-03-24 17:17:50 -05:00
Denis Davydov
64acce557d petsc: workaround xcode stub-out-of-sync issue (#10999) 2019-03-24 10:38:40 -05:00
Daryl W. Grunau
7081dba9ee Packages/zoltan (#10432)
* serialize the F90 interface build

* serialize the F90 interface build
2019-03-23 13:38:29 +01:00
Stephen McDowell
878b122f45 add ninja v1.9.0 (#10994) 2019-03-22 10:05:14 -05:00
Eric Martin
ec45c22808 netgen: update broken URL (#10882)
* netgen: update broken URL

* netgen: fix url_for_version URL
2019-03-22 10:01:07 -05:00
Michael Kuhn
b6185d4ad7 openfoam-com: Fix flex dependency (#10956)
openfoam-com needs flex's FlexLexer.h, which can only be found if flex
is also a link dependency.
2019-03-22 12:46:53 +01:00
Eric Martin
ba5f37ee26 vdt: Add version 0.4.3 (#10982) 2019-03-22 11:57:30 +01:00