Commit graph

24279 commits

Author SHA1 Message Date
Marcus Boden
2018606c32
new package: py-toposort (#28171)
* new package: py-toposort

* style fix
2021-12-29 10:09:44 -06:00
Tom Payerle
eba3e1a20c
trilinos: fix x11 noheaderserror (#27966)
* trilinos: fix define_tpl to handle depspecs w/out headers

This should address #27758 (i.e. errors due to netlib-scalapack not
having headers)

* trilinos: This fixes a mismatch in variant name and spec name for x11/libx11
2021-12-29 15:28:20 +00:00
Brian Spilner
95f2b10b4f
ruby: add v3.1.0 (#28159) 2021-12-29 16:16:45 +01:00
Adam J. Stewart
04f298a34f
py-scikit-learn: add v1.0.2 (#28160) 2021-12-29 16:15:33 +01:00
Joel Falcou
bcf497a5fa
eve: new package (#28169) 2021-12-29 15:41:27 +01:00
Joseph Wang
e0d8964453
geant4: sha256sum has changed (#28158) 2021-12-28 19:01:00 -06:00
Matthieu Dorier
ae15c87bf0
[py-frozenlist] Added py-frozenlist package (#28137) 2021-12-28 14:05:09 -07:00
Matthieu Dorier
cd19782943
[py-minio] Added py-minio package (#28139)
* [py-minio] Added py-minio package

* [py-minio] added missing dependencies for py-minio

* [py-minio] added type=('build', 'run') in dependencies

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-12-28 10:44:03 -07:00
Matthieu Dorier
9d5ce4962d
[py-dh-scikit-optimize] Added new versions (#28133)
* [py-dh-scikit-optimize] Added new versions

* [py-dh-scikit-optimize] fixing dependencies

* making py-configspace a required dependency of py-dh-scikit-learn
2021-12-28 09:59:14 -07:00
Matthieu Dorier
b5b54dbd02
[py-blessed] added new versions (#28167) 2021-12-28 10:43:07 -06:00
Martin Diehl
3cd599d6f6
Fixed typos: 'wtih' instead of 'with' (#28166) 2021-12-28 09:45:43 +01:00
Morten Kristensen
2f5c8ee699
py-vermin: add latest version 1.3.3 (#28162) 2021-12-27 10:09:00 -06:00
Jen Herting
e028ee0d59
New package: py-kaggle (#28152)
* new package

* changed py-six dependency

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-12-24 10:47:44 -06:00
snehring
7fa31911fe
satsuma2: add v2021-03-04 and build error fix (#28120) 2021-12-24 09:41:07 -07:00
Wouter Deconinck
f181b6fef6
root: depends_on fcgi and re-enabled +http support (#28115) 2021-12-24 09:20:13 -07:00
Adam J. Stewart
e2bda65947
py-blessings: fix setuptools version (#28141) 2021-12-24 09:02:09 -07:00
Jen Herting
50a3e3bfd3
New package: py-pyts (#28142)
* [py-pyts] new package

* [py-pyts] removed upperbound for python

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-12-24 08:38:09 -07:00
Olivier Cessenat
eda8151fa0
banner: new package (#26743) 2021-12-24 15:12:47 +01:00
Mikael Simberg
edd55bc73d
Add HPXLocal package file (#28106)
Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
2021-12-24 15:00:40 +01:00
Cyrus Harrison
0863148c4f
conduit: add v0.8.0 release and change def for parmetis var (#28102) 2021-12-24 14:46:56 +01:00
Glenn Johnson
d098f92c4a
r-hdf5r: use pkg-config to find hdf5 (#27847)
* r-hdf5r: use pkg-config to find hdf5

Since hdf5 was switched from autotools to cmake, the hdf5 compiler
wrappers can not be used to find and configure hdf5. This PR switches to
using pkg-config for configuration.

* Add comment about configure patch
2021-12-24 14:43:13 +01:00
albestro
6ed282bb2d
ccls: add v0.20210330 (#28111) 2021-12-24 14:13:50 +01:00
Ye Luo
e945d3763b
quantum-espresso: add v7.0 (#28144) 2021-12-24 14:13:05 +01:00
albestro
262c680997
neovim: add tree-sitter dependency + add v0.6.0 (#28145) 2021-12-24 13:57:15 +01:00
Jen Herting
054149698b
py-fastprogress: new package (#28149) 2021-12-24 13:50:45 +01:00
Wouter Deconinck
a294acfb73
pythia8: bugfix for pythia8 +fastjet (#28153) 2021-12-24 13:47:18 +01:00
Cyrus Harrison
9602d0a03c
dray: add v0.1.8 and v0.1.7 (#28147) 2021-12-24 13:43:11 +01:00
snehring
a3048438c3
lordec update and gatb-core (#28119)
* lordec: version update to 0.9 adding gatb-core as dep

* gatb-core: adding new package gatb-core
2021-12-24 13:42:30 +01:00
Vicente Bolea
6331778552
ParaView: add v5.10.0 (#28121) 2021-12-24 13:40:33 +01:00
Cody Balos
1513e57eee
sundials: add v6.0.0 (#28032) 2021-12-24 13:38:36 +01:00
AMD Toolchain Support
d52e55d8de
vasp: add support for aocc (#27950)
Co-authored-by: mohan babu <mohbabul@amd.com>
2021-12-24 13:36:15 +01:00
kjrstory
9c8a75ff9c
npb package: add version 3.4.1 (#28122)
* The Class F problem has been added to seven of the benchmarks
  (BT, SP, LU, CG, MG, FT, and EP).
* The Class E problem has been added to the IS benchmark.
* In version 3.4.1, 'the number of processes' option does not apply.
* MPIFC and FC flags were added.
2021-12-23 18:52:59 -07:00
Glenn Johnson
f3035f98e1
r-htmltools: fix version 0.5.2 (#28124)
The lastest version of r-htmltools needs version 1.1.0 of r-fastmap.
This is not specified in the DESCRIPTION file.
2021-12-23 16:35:09 -07:00
Jen Herting
15951f0e6b
New package: py-fastcore (#28148)
* [py-fastcore] created template

* [py-fastcore]

- added dependencies
- added homepage
- added description
- removed fixmes

* [py-fastcore] depends on setuptools
2021-12-23 14:11:17 -07:00
Axel Huebl
1c3881b48a
HDF5 package: change 1.10.8/1.13.0 CMake Path (#28103)
These versions change the install location of CMake files used
by dependents, but most dependents don't seem to look in this
new location.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Co-authored-by: Chris White <white238@llnl.gov>
2021-12-23 12:11:50 -08:00
Jen Herting
704c81eda4
amber package: add ambertools21 for @20 (#28064)
* [amber] added 3 more patches for amber20
* [amber] updated dependencies for @20 (cuda, parallel-netcdf)
2021-12-23 11:39:09 -08:00
Massimiliano Culpo
60a5b2a85e Merge tag 'v0.17.1' into develop 2021-12-23 19:48:36 +01:00
Massimiliano Culpo
4381cb5957
New subcommand: spack bootstrap status (#28004)
This command pokes the environment, Python interpreter
and bootstrap store to check if dependencies needed by
Spack are available.

If any are missing, it shows a comprehensible message.
2021-12-23 10:34:04 -08:00
Andrew W Elble
74d64fd61a
py-pymol: update package, new version 2.5.0 (#28044)
* py-pymol: update package, new version 2.5.0

* ensure legacy plugins still load/work
2021-12-23 12:33:53 -05:00
Massimiliano Culpo
82bdda9a89 Reduce the unit tests jobs for the original concretizer
Only test Python 2.7, 3.6 and 3.9
2021-12-23 16:45:06 +01:00
Massimiliano Culpo
e974b44e86 Fix execution of style tests 2021-12-23 16:34:31 +01:00
Massimiliano Culpo
69b8cddb1b Bump version and update CHANGELOG.md 2021-12-23 16:02:09 +01:00
Tom Scogland
8e659f512e locks: allow locks to work under high contention (#27846)
* locks: allow locks to work under high contention

This is a bug found by Harshitha Menon.  

The `lock=None` line shouldn't be a release but should be 
```
return (lock_type, None)
``` 
to inform the caller it couldn't get the lock type requested without
disturbing the existing lock object in the database.  There were also a
couple of bugs due to taking write locks at the beginning without any
checking or release, and not releasing read locks before requeueing.
This version no longer gives me read upgrade to write errors, even
running 200 instances on one box.

* Change lock in check_deps_status to read, release if not installed,
  not sure why this was ever write, but read definitely is more
  appropriate here, and the read lock is only held out of the scope if
  the package is installed.

* Release read lock before requeueing to reduce chance of livelock, the
  timeout that caused the original issue now happens in roughly 3 of 200
  workers instead of 199 on average.
2021-12-23 16:02:09 +01:00
Harmen Stoppels
5daf023aec Regenerate views when specs already installed (#28113)
With this commit:
```
$ spack env activate --temp
$ spack install zlib
==> All of the packages are already installed
==> Updating view at /tmp/spack-faiirgmt/.spack-env/view
$ spack install zlib
==> All of the packages are already installed
```

Before this PR:
```
$ spack env activate --temp
$ spack install zlib
==> All of the packages are already installed
$ spack install zlib
==> All of the packages are already installed
```

No view was generated
2021-12-23 16:02:09 +01:00
Massimiliano Culpo
87abda4cdd py-pandas: fix issue reported by vermin 2021-12-23 16:02:09 +01:00
Morten Kristensen
fa5e186d4a py-vermin: add latest version 1.3.2 (#28072)
* py-vermin: add latest version 1.3.2

* [vermin] Fixed usages of super() without arguments (v3+)
2021-12-23 16:02:09 +01:00
Paul Spencer
e1cc28a30a sbang: respect package permissive package permissions for sbang (#25764)
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-12-23 16:02:09 +01:00
victorusu
17edf1ae90 Add setdefault option to tcl module (#14686)
This commit introduces the command

spack module tcl setdefault <package>

similar to the one already available for lmod

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-12-23 16:02:09 +01:00
Harmen Stoppels
79fd1c5114 Set backup=False by default in filter_file (#28036) 2021-12-23 16:02:09 +01:00
Harmen Stoppels
13e36c5457 Fix table formatting (#28037) 2021-12-23 16:02:09 +01:00