Commit graph

6553 commits

Author SHA1 Message Date
Harmen Stoppels
b1b8500eba
ci: print colored specs in concretization progress (#40711) 2023-10-30 15:29:27 +01:00
Harmen Stoppels
060a1ff2f3
tty: flush immediately (#40774) 2023-10-30 15:07:30 +01:00
Harmen Stoppels
2f3801196d
binary_distribution.py: fix type annotation singleton (#40572)
Convince the language server it's really just a BinaryCacheIndex,
otherwise it defaults to thinking it's Singleton, and can't autocomplete
etc.
2023-10-30 12:52:47 +01:00
Massimiliano Culpo
6983db1392
ASP-based solver: avoid cycles in clingo using hidden directive (#40720)
The code should be functonally equivalent to what it was before,
but now to avoid cycles by design we are using a "hidden"
feature of clingo
2023-10-30 07:38:53 +01:00
John W. Parent
148dce96ed
MSVC: detection from registry (#38500)
Typically MSVC is detected via the VSWhere program. However, this may
not be available, or may be installed in an unpredictable location.
This PR adds an additional approach via Windows Registry queries to
determine VS install location root.

Additionally:

* Construct vs_install_paths after class-definition time (move it to
  variable-access time).
* Skip over keys for which a user does not have read permissions
  when performing searches (previously the presence of these keys
  would have caused an error, regardless of whether they were
  needed).
* Extend helper functionality with option for regex matching on
  registry keys vs. exact string matching.
* Some internal refactoring: remove boolean parameters in some cases
  where the function was always called with the same value
  (e.g. `find_subkey`)
2023-10-27 16:58:50 -07:00
John W. Parent
069762cd37
External finding: update default paths; treat .bat as executable on Windows (#39850)
.bat or .exe files can be considered executable on Windows. This PR
expands the regex for detectable packages to allow for the detection
of packages that vendor .bat wrappers (intel mpi for example).

Additional changes:

* Outside of Windows, when searching for executables `path_hints=None`
  was used to indicate that default path hints should be provided,
  and `[]` was taken to mean that no defaults should be chosen
  (in that case, nothing is searched); behavior on Windows has
  now been updated to match.
* Above logic for handling of `path_hints=[]`  has also been extended
  to library search (for both Linux and Windows).
* All exceptions for external packages were documented as timeout
  errors: this commit adds a distinction for other types of errors
  in warning messages to the user.
2023-10-27 10:40:44 -07:00
Harmen Stoppels
195f965076
OCI buildcache (#38358)
Credits to @ChristianKniep for advocating the idea of OCI image layers
being identical to spack buildcache tarballs.

With this you can configure an OCI registry as a buildcache:

```console 
$ spack mirror add my_registry oci://user/image # Dockerhub

$ spack mirror add my_registry oci://ghcr.io/haampie/spack-test # GHCR

$ spack mirror set --push --oci-username ... --oci-password ... my_registry  # set login credentials
```

which should result in this config:

```yaml
mirrors:
  my_registry:
    url: oci://ghcr.io/haampie/spack-test
    push:
      access_pair: [<username>, <password>]
```

It can be used like any other registry

```
spack buildcache push my_registry [specs...]
```

It will upload the Spack tarballs in parallel, as well as manifest + config
files s.t. the binaries are compatible with `docker pull` or `skopeo copy`.

In fact, a base image can be added to get a _runnable_ image:

```console
$ spack buildcache push --base-image ubuntu:23.04 my_registry python
Pushed ... as [image]:python-3.11.2-65txfcpqbmpawclvtasuog4yzmxwaoia.spack

$ docker run --rm -it [image]:python-3.11.2-65txfcpqbmpawclvtasuog4yzmxwaoia.spack
```

which should really be a game changer for sharing binaries.

Further, all content-addressable blobs that are downloaded and verified
will be cached in Spack's download cache. This should make repeated
`push` commands faster, as well as `push` followed by a separate
`update-index` command.

An end to end example of how to use this in Github Actions is here:

**https://github.com/haampie/spack-oci-buildcache-example**


TODO:

- [x] Generate environment modifications in config so PATH is set up
- [x] Enrich config with Spack's `spec` json (this is allowed in the OCI specification)
- [x] When ^ is done, add logic to create an index in say `<image>:index` by fetching all config files (using OCI distribution discovery API)
- [x] Add logic to use object storage in an OCI registry in `spack install`.
- [x] Make the user pick the base image for generated OCI images.
- [x] Update buildcache install logic to deal with absolute paths in tarballs
- [x] Merge with `spack buildcache` command
- [x] Merge #37441 (included here)
- [x] Merge #39077 (included here)
- [x] #39187 + #39285
- [x] #39341
- [x] Not a blocker: #35737 fixes correctness run env for the generated container images

NOTE:

1. `oci://` is unfortunately taken, so it's being abused in this PR to mean "oci type mirror". `skopeo` uses `docker://` which I'd like to avoid, given that classical docker v1 registries are not supported.
2. this is currently `https`-only, given that basic auth is used to login. I _could_ be convinced to allow http, but I'd prefer not to, given that for a `spack buildcache push` command multiple domains can be involved (auth server, source of base image, destination registry). Right now, no urllib http handler is added, so redirects to https and auth servers with http urls will simply result in a hard failure.

CAVEATS:

1. Signing is not implemented in this PR. `gpg --clearsign` is not the nicest solution, since (a) the spec.json is merged into the image config, which must be valid json, and (b) it would be better to sign the manifest (referencing both config/spec file and tarball) using more conventional image signing tools
2. `spack.binary_distribution.push` is not yet implemented for the OCI buildcache, only `spack buildcache push` is. This is because I'd like to always push images + deps to the registry, so that it's `docker pull`-able, whereas in `spack ci` we really wanna push an individual package without its deps to say `pr-xyz`, while its deps reside in some `develop` buildcache.
3. The `push -j ...` flag only works for OCI buildcache, not for others
2023-10-27 15:30:04 +02:00
Adam J. Stewart
b4b25dec64
PythonPackage: allow archive_files to be overridden (#40694) 2023-10-26 15:25:56 -05:00
Harmen Stoppels
e96f31c29d
spack checksum pkg@1.2, use as version filter (#39694)
* spack checksum pkg@1.2, use as version filter

Currently pkg@1.2 splits on @ and looks for 1.2 specifically, with this
PR pkg@1.2 is a filter so any matching 1.2, 1.2.1, ..., 1.2.10 version
is displayed.

* fix tests

* fix style
2023-10-26 09:57:55 -07:00
Xavier Delaruelle
751b64cbcd
modules: no --delim option if separator is colon character (#39010)
Update Tcl modulefile template to simplify generated `append-path`,
`prepend-path` and `remove-path` commands and improve their readability.

If path element delimiter is colon character, do not set the `--delim`
option as it is the default delimiter value.
2023-10-26 15:55:49 +02:00
Adam J. Stewart
f57c2501a3
PythonPackage: nested config_settings (#40693)
* PythonPackage: nested config_settings

* flake8
2023-10-26 08:18:02 -05:00
Harmen Stoppels
1c8073c21f
spack checksum: show long flags in usage output (#40407) 2023-10-26 14:48:35 +02:00
Xavier Delaruelle
86520abb68
modules: hide implicit modulefiles (#36619)
Renames exclude_implicits to hide_implicits

When hide_implicits option is enabled, generate modulefile of
implicitly installed software and hide them. Even if implicit, those
modulefiles may be referred as dependency in other modulefiles thus they
should be generated to make module properly load dependent module.

A new hidden property is added to BaseConfiguration class.

To hide modulefiles, modulercs are generated along modulefiles. Such rc
files contain specific module command to indicate a module should be
hidden (for instance when using "module avail").

A modulerc property is added to TclFileLayout and LmodFileLayout classes
to get fully qualified path name of the modulerc associated to a given
modulefile.

Modulerc files will be located in each module directory, next to the
version modulefiles. This scheme is supported by both module tool
implementations.

modulerc_header and hide_cmd_format attributes are added to
TclModulefileWriter and LmodModulefileWriter. They help to know how to
generate a modulerc file with hidden commands for each module tool.

Tcl modulerc file requires an header. As we use a command introduced on
Modules 4.7 (module-hide --hidden-loaded), a version requirement is
added to header string.

For lmod, modules that open up a hierarchy are never hidden, even if
they are implicitly installed.

Modulerc is created, updated or removed when associated modulefile is
written or removed. If an implicit modulefile becomes explicit, hidden
command in modulerc for this modulefile is removed. If modulerc becomes
empty, this file is removed. Modulerc file is not rewritten when no
content change is detected.

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-10-26 11:49:13 +00:00
dependabot[bot]
6bd2dd032b
build(deps): bump pytest from 7.4.2 to 7.4.3 in /lib/spack/docs (#40697) 2023-10-25 20:58:53 +02:00
John W. Parent
e1da9339d9
Windows: search PATH for patch utility (#40513)
Previously, we only searched for `patch` inside of whatever Git
installation was available because the most common installation of Git
available on Windows had `patch`. That's not true for all possible
installations of Git though, so this updates the search to also check
PATH.
2023-10-24 16:37:26 -07:00
Michael Kuhn
bf6d5df0ec
audit: add check for GitLab patches (#40656)
GitLab's .patch URLs only provide abbreviated hashes, while .diff URLs
provide full hashes. There does not seem to be a parameter to force
.patch URLs to also return full hashes, so we should make sure to use
the .diff ones.
2023-10-23 20:22:39 +02:00
Harmen Stoppels
96548047f8
concretizer verbose: show progress in % too (#40654) 2023-10-23 10:26:20 +02:00
Tamara Dahlgren
cfc5363053
Docs: Update spec variant checks plus python quotes and string formatting (#40643) 2023-10-23 09:15:03 +02:00
Tamara Dahlgren
f915489c62
Docs: Add version range example to conditional dependencies (#40630)
* Docs: Add version range example to conditional dependencies

* Add when context manager example
2023-10-22 10:52:44 +02:00
Harmen Stoppels
27a0425e5d
concretize separately: show concretization time per spec as they concretize when verbose (#40634) 2023-10-20 17:09:19 +02:00
Massimiliano Culpo
cbc39977ca
ASP-based solver: minimize weights over edges (#40632)
With the introduction of multiple build dependencies from the same package in the DAG, we need to minimize a few weights accounting for edges rather than nodes. If we don't do that we might have multiple "optimal" solutions that differ only in how the same nodes are connected together. This commit ensures optimal versions are picked per parent in case of multiple choices for a dependency.
2023-10-20 14:37:07 +02:00
Harmen Stoppels
468f6c757e
schema/compilers.py: fix validation of 2+ entries (#40627)
Fix the following syntax which validates only the first array entry:

```python
"compilers": {
    "type": "array",
    "items": [
        {
            "type": ...
        }
    ]
}
```

to

```python
"compilers": {
    "type": "array",
    "items": {
        "type": ...
    }
}
```

which validates the entire array.

Oops...
2023-10-20 09:51:49 +02:00
dependabot[bot]
405de56c71
build(deps): bump mypy from 1.6.0 to 1.6.1 in /lib/spack/docs (#40603) 2023-10-19 23:03:48 +02:00
dependabot[bot]
4c1785d5f6
build(deps): bump urllib3 from 2.0.6 to 2.0.7 in /lib/spack/docs (#40583) 2023-10-19 23:02:51 +02:00
Harmen Stoppels
72b36ac144
Improve setup build / run / test environment (#35737)
This adds a `SetupContext` class which is responsible for setting
package.py module globals, and computing the changes to environment
variables for the build, test or run context.

The class uses `effective_deptypes` which takes a list of specs (e.g. single
item of a spec to build, or a list of environment roots) and a context
(build, run, test), and outputs a flat list of specs that affect the
environment together with a flag in what way they do so. This list is
topologically ordered from root to leaf, so that one can be assured that
dependents override variables set by dependencies, not the other way
around.

This is used to replace the logic in `modifications_from_dependencies`,
which has several issues: missing calls to `setup_run_environment`, and
the order in which operations are applied.

Further, it should improve performance a bit in certain cases, since
`effective_deptypes` run in O(v + e) time, whereas `spack env activate`
currently can take up to O(v^2 + e) time due to loops over roots. Each
edge in the DAG is visited once by calling `effective_deptypes` with
`env.concrete_roots()`.

By marking and propagating flags through the DAG, this commit also fixes
a bug where Spack wouldn't call `setup_run_environment` for runtime
dependencies of link dependencies. And this PR ensures that Spack
correctly sets up the runtime environment of direct build dependencies.

Regarding test dependencies: in a build context they are are build-time
test deps, whereas in a test context they are install-time test deps.
Since there are no means to distinguish the build/install type test deps,
they're both.

Further changes:

- all `package.py` module globals are guaranteed to be set before any of the
  `setup_(dependent)_(run|build)_env` functions is called
- traversal order during setup: first the group of externals, then the group
  of non-externals, with specs in each group traversed topological (dependencies
  are setup before dependents)
- modules: only ever call `setup_dependent_run_environment` of *direct* link/run
   type deps
- the marker in `set_module_variables_for_package` is dropped, since we should
  call the method once per spec. This allows us to set only a cheap subset of
  globals on the module: for example it's not necessary to compute the expensive
  `cmake_args` and w/e if the spec under consideration is not the root node to be
  built.
- `spack load`'s `--only` is deprecated (it has no effect now), and `spack load x`
  now means: do everything that's required for `x` to work at runtime, which
  requires runtime deps to be setup -- just like `spack env activate`.
- `spack load` no longer loads build deps (of build deps) ...
- `spack env activate` on partially installed or broken environments: this is all
  or nothing now. If some spec errors during setup of its runtime env, you'll only
  get the unconditional variables + a warning that says the runtime changes for
  specs couldn't be applied.
- Remove traversal in upward direction from `setup_dependent_*` in packages.
  Upward traversal may iterate to specs that aren't children of the roots
  (e.g. zlib / python have hundreds of dependents, only a small fraction is
  reachable from the roots. Packages should only modify the direct dependent
  they receive as an argument)
2023-10-19 20:44:05 +02:00
Harmen Stoppels
79896ee85c
spack checksum: restore ability to select top n (#40531)
The ability to select the top N versions got removed in the checksum overhaul,
cause initially numbers were used for commands.

Now that we settled on characters for commands, let's make numbers pick the top
N again.
2023-10-19 11:33:01 -07:00
Scott Wittenburg
46c1a8e4c6
gitlab ci: Rework how mirrors are configured (#39939)
Improve how mirrors are used in gitlab ci, where we have until now thought
of them as only a string.

By configuring ci mirrors ahead of time using the proposed mirror templates,
and by taking advantage of the expressiveness that spack now has for mirrors,
this PR will allow us to easily switch the protocol/url we use for fetching
binary dependencies.

This change also deprecates some gitlab functionality and marks it for
removal in Spack 0.23:

    - arguments to "spack ci generate":
        * --buildcache-destination
        * --copy-to
    - gitlab configuration options:
        * enable-artifacts-buildcache
        * temporary-storage-url-prefix
2023-10-19 11:04:59 -05:00
Massimiliano Culpo
a1ca1a944a
ASP-based solver: single Spec instance per dag hash (#39590)
Reused specs used to be referenced directly into the built spec.

This might cause issues like in issue 39570 where two objects in
memory represent the same node, because two reused specs were
loaded from different sources but referred to the same spec
by DAG hash.

The issue is solved by copying concrete specs to a dictionary keyed
by dag hash.
2023-10-19 16:00:45 +02:00
Tamara Dahlgren
4f49f7b9df
Stand-alone test feature deprecation postponed to v0.22 (#40600) 2023-10-19 06:03:54 -06:00
Harmen Stoppels
a42eb0d2bd
unparse: also support generic type aliases (#40328) 2023-10-18 23:16:05 +02:00
Harmen Stoppels
294e659ae8
AutotoolsPackage / MakefilePackage: add gmake build dependency (#40380) 2023-10-18 19:56:54 +02:00
Harmen Stoppels
dc071a3995
Fix dev-build keep_stage behavior (#40576)
`spack dev-build` would incorrectly set `keep_stage=True` for the
entire DAG, including for non-dev specs, even though the dev specs
have a DIYStage which never deletes sources.
2023-10-18 11:44:26 +00:00
Aiden Grossman
2802013dc6
Add license directive (#39346)
This patch adds in a license directive to get the ball rolling on adding in license 
information about packages to spack. I'm primarily interested in just adding
license into spack, but this would also help with other efforts that people are
interested in such as adding license information to the ASP solve for 
concretization to make sure licenses are compatible.

Usage:

Specifying the specific license that a package is released under in a project's
`package.py` is good practice. To specify a license, find the SPDX identifier for
a project and then add it using the license directive:

```python
   license("<SPDX Identifier HERE>")
```

For example, for Apache 2.0, you might write:

```python
   license("Apache-2.0")
```

Note that specifying a license without a when clause makes it apply to all
versions and variants of the package, which might not actually be the case.
For example, a project might have switched licenses at some point or have
certain build configurations that include files that are licensed differently.
To account for this, you can specify when licenses should be applied. For
example, to specify that a specific license identifier should only apply
to versionup to and including 1.5, you could write the following directive:

```python
   license("MIT", when="@:1.5")
```
2023-10-18 03:58:19 -07:00
Greg Becker
37bafce384
abi.py: fix typo, add type-hints (#38216)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-10-18 11:22:55 +02:00
Peter Scheibel
9cde25b39e
Allow / in GitVersion (#39398)
This commit allows version specifiers to refer to git branches that contain
forward slashes. For example, the following is valid syntax now:

    pkg@git.releases/1.0
   
It also adds a new method `Spec.format_path(fmt)` which is like `Spec.format`,
but also maps unsafe characters to `_` after interpolation. The difference is
as follows:

    >>> Spec("pkg@git.releases/1.0").format("{name}/{version}")
    'pkg/git.releases/1.0'

    >>> Spec("pkg@git.releases/1.0").format_path("{name}/{version}")
    'pkg/git.releases_1.0'

The `format_path` method is used in all projections. Notice that this method
also maps `=` to `_`

    >>> Spec("pkg@git.main=1.0").format_path("{name}/{version}")
    'pkg/git.main_1.0'
   
which should avoid syntax issues when `Spec.prefix` is literally copied into a
Makefile as sometimes happens in AutotoolsPackage or MakefilePackage
2023-10-17 20:33:59 +02:00
Harmen Stoppels
bd165ebc4d
Support spack env activate --with-view <name> <env> (#40549)
Currently `spack env activate --with-view` exists, but is a no-op.

So, it is not too much of a breaking change to make this redundant flag
accept a value `spack env activate --with-view <name>` which activates
a particular view by name.

The view name is stored in `SPACK_ENV_VIEW`.

This also fixes an issue where deactivating a view that was activated
with `--without-view` possibly removes entries from PATH, since now we
keep track of whether the default view was "enabled" or not.
2023-10-17 15:40:48 +02:00
Massimiliano Culpo
4a96d29e69
Use string representation of deptypes for concrete specs (#40566) 2023-10-16 22:36:22 +02:00
Harmen Stoppels
a9cfa32c34
spack checksum: handle all versions dropped better (#40530)
* spack checksum: fix error when all versions are dropped

* add test
2023-10-15 15:08:11 -07:00
Harmen Stoppels
a5cb7a9816
spack checksum: improve interactive filtering (#40403)
* spack checksum: improve interactive filtering

* fix signature of executable

* Fix restart when using editor

* Don't show [x version(s) are new] when no known versions (e.g. in spack create <url>)

* Test ^D in test_checksum_interactive_quit_from_ask_each

* formatting

* colorize / skip header on invalid command

* show original total, not modified total

* use colify for command list

* Warn about possible URL changes

* show possible URL change as comment

* make mypy happy

* drop numbers

* [o]pen editor -> [e]dit
2023-10-13 19:43:22 +00:00
Harmen Stoppels
c9677b2465
Expand multiple build systems section (#39589)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-10-13 14:59:44 +02:00
Massimiliano Culpo
3752fe9e42
Better error message when wrong platform is used (#40492)
fixes #40299
2023-10-13 11:18:55 +02:00
Matthew Chan
8a0de10f60
containerize: update docs to activate env before using container templates (#40493) 2023-10-13 06:59:44 +00:00
Harmen Stoppels
64ef33767f
modules:prefix_inspections: allow empty dict (#40485)
Currently

```
modules:
  prefix_inspections:: {}
```

gives you the builtin defaults instead of no mapping.
2023-10-12 09:28:16 -07:00
dependabot[bot]
aa7dfdb5c7
build(deps): bump python-levenshtein in /lib/spack/docs (#40461)
Bumps [python-levenshtein](https://github.com/maxbachmann/python-Levenshtein) from 0.22.0 to 0.23.0.
- [Release notes](https://github.com/maxbachmann/python-Levenshtein/releases)
- [Changelog](https://github.com/maxbachmann/python-Levenshtein/blob/main/HISTORY.md)
- [Commits](https://github.com/maxbachmann/python-Levenshtein/compare/v0.22.0...v0.23.0)

---
updated-dependencies:
- dependency-name: python-levenshtein
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-10-12 14:38:33 +00:00
Massimiliano Culpo
3935e047c6
Remove deprecated "extra_instructions" option for containers (#40365) 2023-10-12 12:12:15 +02:00
Scott Wittenburg
d9cb1a1070
buildcache: Tell servers not to cache index or hash (#40339) 2023-10-11 18:13:57 -06:00
Victor Brunini
7a4b479724
cmake: drop CMAKE_STATIC_LINKER_FLAGS (#40423)
Because those end up being passed to ar which does not understand linker
arguments. This was making ldflags largely unusuable for statically
linked cmake packages.
2023-10-11 23:30:44 +02:00
Massimiliano Culpo
861bb4d35a
Update bootstrap buildcache to support Python 3.12 (#40404)
* Add support for Python 3.12
* Use optimized build of clingo
2023-10-11 19:03:17 +02:00
Harmen Stoppels
65e7ec0509
spider: respect <base> tag (#40443) 2023-10-11 08:49:50 -07:00
dependabot[bot]
e3b71b32aa
build(deps): bump mypy from 1.5.1 to 1.6.0 in /lib/spack/docs (#40424)
Bumps [mypy](https://github.com/python/mypy) from 1.5.1 to 1.6.0.
- [Commits](https://github.com/python/mypy/compare/v1.5.1...v1.6.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-10-11 12:35:41 +00:00