Commit graph

33628 commits

Author SHA1 Message Date
Mark W. Krentel
d1c722a49c
hpcviewer: add version 2023.04 (#37556) 2023-05-08 12:30:10 -07:00
eugeneswalker
3446feff70
use latest trilinos for +cuda variants (#37164) 2023-05-08 12:29:54 -07:00
eugeneswalker
41afeacaba
new package: psalg (#37357)
* new package: psalg

* use new maintainer syntax

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-05-08 12:26:19 -07:00
Massimiliano Culpo
0139288ced
Add a "requires" directive, extend functionality of package requirements (#36286)
Add a "require" directive to packages, which functions exactly like
requirements specified in packages.yaml (uses the same fact-generation
logic); update both to allow making the requirement conditional.

* Packages may now use "require" to add constraints. This can be useful
  for something like "require(%gcc)" (where before we had to add a
  conflict for every compiler except gcc).
* Requirements (in packages.yaml or in a "require" directive) can be
  conditional on a spec, e.g. "require(%gcc, when=@1.0.0)" (version
  1.0.0 can only build with gcc).
* Requirements may include a message which clarifies why they are needed.
  The concretizer assigns a high priority to errors which generate these
  messages (in particular over errors for unsatisfied requirements that
  do not produce messages, but also over a number of more-generic
  errors).
2023-05-08 10:12:26 -07:00
eugeneswalker
d0cba2bf35
caliper +rocm: use hipcc for CMAKE_CXX_COMPILER (#35219) 2023-05-08 09:40:23 -07:00
Mark W. Krentel
6afa2d6298
libmonitor: add version 2023.03.15 (#37434) 2023-05-08 08:58:11 -07:00
Seth R. Johnson
947445ccdd
Fix pixman macOS build and add missing build deps (#36982) 2023-05-08 08:47:51 -07:00
snehring
b605cd0151
trinity: adding version 2.15.1 (#37076) 2023-05-08 08:32:05 -07:00
Mikael Simberg
273bccbccf
Add HPX 1.9.0 (#37426) 2023-05-08 12:24:02 +02:00
Alec Scott
d5d596a851
pkgconf: add v1.9.4 (#36437) 2023-05-07 23:27:28 +02:00
eugeneswalker
0ddb5de27c
caliper +rocm: patch missing libunwind include dir (#37461)
* patch missing libunwind include dir

* caliper +libunwind +sampler: patch libunwind include dir
2023-05-07 12:49:46 -07:00
eugeneswalker
8942909852
petsc@3.19.1 +rocm: conflicts with rocprim@5.3.0 (#37474)
* petsc@3.19.1 +rocm: conflicts with rocprim@5.3.0

* conflict with rocprim@5.3.0:5.3.2 when +rocm
2023-05-07 17:27:52 +00:00
Alec Scott
0143d5bf01
libtiff: add v4.5.0 (#37523) 2023-05-07 12:22:56 -04:00
Harmen Stoppels
e17d6d5eee
gitlab ci: bump tutorial image (#37544) 2023-05-07 16:24:33 +02:00
Alec Scott
2a54cda953
libblastrampoline: add v5.8.0 (#37538) 2023-05-07 10:45:34 +02:00
Alec Scott
097d3e15b4
libpcap: add v1.10.4 (#37451) 2023-05-05 22:02:57 -07:00
Tamara Dahlgren
374264f610
Packaging Guide: build-time test updates: option and test logs (#37093)
* Packaging Guide: build-time test updates: option and test logs
* Fix a couple of typos
2023-05-05 22:19:06 -06:00
Chris Green
d6bf9bc8f1
[elfutils] iconv is required (see ./configure --help) (#37464) 2023-05-05 22:16:03 -06:00
Harmen Stoppels
fa7719a031
Improve version, version range, and version list syntax and behavior (#36273)
## Version types, parsing and printing

- The version classes have changed: `VersionBase` is removed, there is now a
  `ConcreteVersion` base class. `StandardVersion` and `GitVersion` both inherit
  from this.

- The public api (`Version`, `VersionRange`, `ver`) has changed a bit:
  1. `Version` produces either `StandardVersion` or `GitVersion` instances.
  2. `VersionRange` produces a `ClosedOpenRange`, but this shouldn't affect the user.
  3. `ver` produces any of `VersionList`, `ClosedOpenRange`, `StandardVersion`
     or `GitVersion`.

- No unexpected type promotion, so that the following is no longer an identity:
  `Version(x) != VersionRange(x, x)`.

- `VersionList.concrete` now returns a version if it contains only a single element
  subtyping `ConcreteVersion` (i.e. `StandardVersion(...)` or `GitVersion(...)`)

- In version lists, the parser turns `@x` into `VersionRange(x, x)` instead
  of `Version(x)`.

- The above also means that `ver("x")` produces a range, whereas
  `ver("=x")` produces a `StandardVersion`. The `=` is part of _VersionList_
  syntax.

- `VersionList.__str__` now outputs `=x.y.z` for specific version entries,
  and `x.y.z` as a short-hand for ranges `x.y.z:x.y.z`.

- `Spec.format` no longer aliases `{version}` to `{versions}`, but pulls the
  concrete version out of the list and prints that -- except when the list is
  is not concrete, then is falls back to `{versions}` to avoid a pedantic error.
  For projections of concrete specs, `{version}` should be used to render
  `1.2.3` instead of `=1.2.3` (which you would get with `{versions}`).
  The default `Spec` format string used in `Spec.__str__` now uses
  `{versions}` so that `str(Spec(string)) == string` holds.

## Changes to `GitVersion`

- `GitVersion` is a small wrapper around `StandardVersion` which enriches it
   with a git ref. It no longer inherits from it.

- `GitVersion` _always_ needs to be able to look up an associated Spack version
  if it was not assigned (yet). It throws a `VersionLookupError` whenever `ref_version`
  is accessed but it has no means to look up the ref; in the past Spack would
  not error and use the commit sha as a literal version, which was incorrect.
   
- `GitVersion` is never equal to `StandardVersion`, nor is satisfied by it. This
  is such that we don't lose transitivity. This fixes the following bug on `develop`
  where `git_version_a == standard_version == git_version_b` does not imply
  `git_version_a == git_version_b`. It also ensures equality always implies equal
  hash, which is also currently broken on develop; inclusion tests of a set of
  versions + git versions would behave differently from inclusion tests of a
  list of the same objects.

- The above means `ver("ref=1.2.3) != ver("=1.2.3")` could break packages that branch
  on specific versions, but that was brittle already, since the same happens with
  externals: `pkg@1.2.3-external` suffixes wouldn't be exactly equal either. Instead,
  those checks should be `x.satisfies("@1.2.3")` which works both for git versions and
  custom version suffixes.

- `GitVersion` from commit will now print as `<hash>=<version>` once the
  git ref is resolved to a spack version. This is for reliability -- version is frozen
  when added to the database and queried later. It also improves performance
  since there is no need to clone all repos of all git versions after `spack clean -m`
  is run and something queries the database, triggering version comparison, such
  as potentially reuse concretization.

- The "empty VerstionStrComponent trick" for `GitVerison` is dropped since it wasn't
  representable as a version string (by design). Instead, it's replaced by `git`,
  so you get `1.2.3.git.4` (which reads 4 commits after a tag 1.2.3). This means
  that there's an edge case for version schemes `1.1.1`, `1.1.1a`, since the
  generated git version `1.1.1.git.1` (1 commit after `1.1.1`) compares larger
  than `1.1.1a`, since `a < git` are compared as strings. This is currently a
  wont-fix edge case, but if really required, could be fixed by special casing
  the `git` string.

- Saved, concrete specs (database, lock file, ...) that only had a git sha as their
  version, but have no means to look the effective Spack version anymore, will
  now see their version mapped to `hash=develop`. Previously these specs
  would always have their sha literally interpreted as a version string (even when
  it _could_ be looked up). This only applies to databases, lock files and spec.json
  files created before Spack 0.20; after this PR, we always have a Spack version
  associated to the relevant GitVersion).

- Fixes a bug where previously `to_dict` / `from_dict` (de)serialization would not
  reattach the repo to the GitVersion, causing the git hash to be used as a literal
  (bogus) version instead of the resolved version. This was in particularly breaking
  version comparison in the build process on macOS/Windows.


## Installing or matching specific versions

- In the past, `spack install pkg@3.2` would install `pkg@=3.2` if it was a
  known specific version defined in the package, even when newer patch releases
  `3.2.1`, `3.2.2`, `...` were available. This behavior was only there because
  there was no syntax to distinguish between `3.2` and `3.2.1`. Since there is
  syntax for this now through `pkg@=3.2`, the old exact matching behavior is
  removed. This means that `spack install pkg@3.2` constrains the `pkg` version
  to the range `3.2`, and `spack install pkg@=3.2` constrains it to the specific
  version `3.2`.

- Also in directives such as `depends_on("pkg@2.3")` and their when
  conditions `conflicts("...", when="@2.3")` ranges are ranges, and specific
  version matches require `@=2.3.`.

- No matching version: in the case `pkg@3.2` matches nothing, concretization
  errors. However, if you run `spack install pkg@=3.2` and this version
  doesn't exist, Spack will define it; this allows you to install non-registered
  versions.

- For consistency, you can now do `%gcc@10` and let it match a configured
  `10.x.y` compiler. It errors when there is no matching compiler.
  In the past it was interpreted like a specific `gcc@=10` version, which
  would get bootstrapped.

- When compiler _bootstrapping_ is enabled, `%gcc@=10.2.0` can be used to
  bootstrap a specific compiler version.

## Other changes

- Externals, compilers, and develop spec definitions are backwards compatible.
  They are typically defined as `pkg@3.2.1` even though they should be
  saying `pkg@=3.2.1`. Spack now transforms `pkg@3` into `pkg@=3` in those cases.

- Finally, fix strictness of `version(...)` directive/declaration. It just does a simple
  type check, and now requires strings/integers. Floats are not allowed because
  they are ambiguous `str(3.10) == "3.1"`.
2023-05-05 22:04:41 -06:00
Alec Scott
f6497972b8
apr: add v1.7.4 (#37445) 2023-05-05 18:28:58 -04:00
Alec Scott
5c3ec5f47c
fms: add v2023.01 (#37450) 2023-05-05 18:24:10 -04:00
Manuela Kuhn
16bddf152e
py-palettable: add 3.3.3 (#37443) 2023-05-05 18:23:33 -04:00
Mittagskogel
4403df4f08
hdf5: Add conflict for older cmake versions. (#37463)
See HDFGroup/hdf5 issue 2906
2023-05-05 18:19:39 -04:00
Alec Scott
7cf45442a7
phast: add v1.6 (#37455) 2023-05-05 18:14:45 -04:00
Alec Scott
edb8bc91b2
mmg: add v5.7.1 (#37453) 2023-05-05 18:14:23 -04:00
Alec Scott
9610ecb936
octave: add v8.2.0 (#37454) 2023-05-05 18:09:16 -04:00
Eric Berquist
b2a8e8734e
Fix typos in packaging guide (#37460) 2023-05-05 22:08:58 +00:00
Alec Scott
c287dbbf13
logrotate: add v3.21.0 (#37452) 2023-05-05 18:08:54 -04:00
Alec Scott
1808ce11de
extrae: add v4.0.4 (#37449) 2023-05-05 18:03:55 -04:00
Alec Scott
13b0b1d574
cli11: add v2.3.2 (#37447) 2023-05-05 11:33:49 -07:00
snehring
261a34a7a4
Adding ncbi-vdb 3.0.2 (#37435)
* ncbi-vdb: adding version 3.0.2
* sra-tools: adding version restriction for newer versions
2023-05-05 11:06:07 -07:00
Alec Scott
222b44bd45
biobloom: add v2.3.5 (#37446) 2023-05-05 11:01:22 -07:00
Alec Scott
c105ac07bb
editline: add v1.17.1 (#37448) 2023-05-05 10:57:47 -07:00
Harmen Stoppels
9ef062fcca
Add spack buildcache push (alias to buildcache create) (#34861)
`spack buildcache create` is a misnomer cause it's the only way to push to
an existing buildcache (and it in fact calls binary_distribution.push).

Also we have `spack buildcache update-index` but for create the flag is
`--rebuild-index`, which is confusing (and also... why "rebuild"
something if the command is "create" in the first place, that implies it
wasn't there to begin with).

So, after this PR, you can use either

```
spack buildcache create --rebuild-index
```

or

```
spack buildcache push --update-index
```

Also, alias `spack buildcache rebuild-index` to `spack buildcache
update-index`.
2023-05-05 19:54:26 +02:00
Harmen Stoppels
ddea33bdc0
Update tutorial pipeline to Ubuntu 22.04 (#35451) 2023-05-05 17:52:07 +02:00
Harmen Stoppels
803425780e
ci: stop downloading recent gmake (#37458) 2023-05-05 17:09:56 +02:00
Chris Green
d600aef4f4
Relax environment manifest filename requirements and lockfile identification criteria (#37413)
* Relax filename requirements and lockfile identification criteria

* Tests

* Update function docs and help text

* Update function documentation

* Update Sphinx documentation

* Adjustments per https://github.com/spack/spack/pull/37413#pullrequestreview-1413540132

* Further tweaks per https://github.com/spack/spack/pull/37413#pullrequestreview-1413971254

* Doc fixes per https://github.com/spack/spack/pull/37413#issuecomment-1535976068
2023-05-05 07:40:49 -05:00
Harmen Stoppels
af9b9f6baf
binutils: enable debug section compression with zlib by default (#37359) 2023-05-05 14:14:48 +02:00
Harmen Stoppels
bbc779f3f0
cc: deal with -Wl,-rpath= without value, deal with NAG (#37215)
Spack never parsed `nagfor` linker arguments put on the compiler line: 
```
nagfor -Wl,-Wl,,-rpath,,/path
````
so, let's continue not attempting to parse that.
2023-05-05 12:16:31 +02:00
Harmen Stoppels
3ecb84d398
elfutils: unconditionally depend on zstd (#37368) 2023-05-05 10:40:14 +02:00
Michael Kuhn
b2c3973d4a
meson: change default build type to "release" (#37436)
The same was done for CMake in #36679.
2023-05-05 10:35:40 +02:00
Harmen Stoppels
35e1dc8eba
spack uninstall: reduce verbosity with named environments (#34001) 2023-05-05 10:23:08 +02:00
Harmen Stoppels
bf71b78094
deprecate buildcache create --rel, buildcache install --allow-root (#37285)
`buildcache create --rel`: deprecate this because there is no point in
making things relative before tarballing; on install you need to expand
`$ORIGIN` / `@loader_path` / relative symlinks anyways because some
dependencies may actually be in an upstream, or have different
projections.

`buildcache install --allow-root`: this flag was propagated through a
lot of functions but was ultimately unused.
2023-05-05 09:51:53 +02:00
Sergey Kosukhin
85730de055
mpich: avoid '-fallow-argument-mismatch' in the compiler wrappers (#33323) 2023-05-05 09:37:12 +02:00
Alec Scott
bc88b581b4
cleaveland4: add v4.5 (#37319) 2023-05-05 03:03:47 -04:00
Alec Scott
1ae556829a
Revert "lua: add v5.4.5 (#37334)" (#37431)
This reverts commit 59e2ef6ad6.
2023-05-05 02:58:45 -04:00
Massimiliano Culpo
0c5a5e2ce0
Remove "blacklist" and "whitelist" from module configuration (#37432)
The sections were deprecated in v0.19
2023-05-05 00:28:34 -04:00
Greg Becker
c3593e5b48
Allow choosing the name of the packages subdirectory in repositories (#36643)
Co-authored-by: becker33 <becker33@users.noreply.github.com>
2023-05-04 23:36:21 +02:00
Robert Cohn
3c40d9588f
intel-oneapi-mkl: include mpi libs when using +cluster (#37386) 2023-05-04 14:46:55 -04:00
Massimiliano Culpo
16613408e4
Place an upper bound on urllib3 to build docs (#37433) 2023-05-04 19:40:43 +02:00