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Author SHA1 Message Date
alalazo
22bb0562fe Revert "flake8 : fixed all issues?" 
This reverts commit 71e49e289a.
 2016-05-11 16:09:47 +02:00
alalazo
b215b19cae modules : added docs 2016-05-11 15:42:48 +02:00
Denis Davydov
809ded74c9 add functions for simple unit tests; refactor openblas to use them 2016-05-11 15:10:13 +02:00
Benedikt Hegner
0b7b25487f improve error message for wrong config section names 2016-05-11 13:29:27 +02:00
Todd Gamblin
6d6eb0f2d1 Remove config.py from flake checking for now. 2016-05-11 02:32:13 -07:00
Todd Gamblin
fc8d18ebdc Merge branch 'bugfix/config' of git://github.com/hegner/spack into hegner-bugfix/config 2016-05-11 02:31:20 -07:00
Todd Gamblin
9030541e4b Merge pull request #929 from epfl-scitas/differentiate_framework_from_packages 
QA : make qa checking less painful
 2016-05-11 02:26:07 -07:00
Benedikt Hegner
c1e6b52184 first round of coding rules 2016-05-11 00:28:12 +02:00
Benedikt Hegner
05b6c3f8cf add test for list parameters 2016-05-11 00:14:24 +02:00
Benedikt Hegner
6e462abb4d hmm... test before commit 2016-05-10 23:31:29 +02:00
Benedikt Hegner
5d477bc956 fix setting config for list parameters 2016-05-10 23:19:30 +02:00
Todd Gamblin
98faee1d5c Minor tweaks to flock docs. 2016-05-10 11:19:17 -07:00
Todd Gamblin
a49662276d Merge branch 'fix-doc-flock' of git://github.com/luca-heltai/spack into luca-heltai-fix-doc-flock 2016-05-10 11:10:07 -07:00
Luca Heltai
4cb91d6f7b Added documentation on lockf/flock. 2016-05-10 19:46:24 +02:00
alalazo
7d74e209f3 qa : this should still fail due to F821 2016-05-10 19:20:26 +02:00
alalazo
979b53cab6 qa : modifying 2 packages and a framework file just for the sake of it 2016-05-10 18:33:07 +02:00
alalazo
71e49e289a flake8 : fixed all issues? 2016-05-10 17:19:22 +02:00
alalazo
c3f3f26632 modules : added warning if a user tries to add prerequisite with dotkit 2016-05-10 16:16:50 +02:00
alalazo
0b7c673205 modules : changed syntax for environment modifications 2016-05-10 15:48:37 +02:00
alalazo
f8f71b1c2c modules : prefix_inspections moved to modules.yaml 2016-05-10 13:37:03 +02:00
alalazo
9eee71edf7 Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 2016-05-10 11:13:19 +02:00
Todd Gamblin
42edb6840e Merge pull request #905 from adamjstewart/features/rpath_flag 
Allow compilers to specify their own rpath linking flags
 2016-05-10 01:56:49 -07:00
Todd Gamblin
a2528a86b4 Merge pull request #692 from mathstuf/quoted-command-lines 
executable: quote arguments
 2016-05-10 01:42:26 -07:00
Todd Gamblin
8ce45d2161 Merge pull request #775 from epfl-scitas/fixes/config_update 
fix: proper update of config file
 2016-05-10 01:35:56 -07:00
Todd Gamblin
57e495943f Merge pull request #757 from glennpj/extend_r 
Make R extendable
 2016-05-10 01:30:13 -07:00
Todd Gamblin
69f6baf28e Merge pull request #842 from hegner/compiler_lookup_order 
Bugfix - preserve lookup order in PATH when invoking 'spack compiler add'
 2016-05-10 01:11:18 -07:00
Todd Gamblin
cbfba84aa2 Merge pull request #849 from brettviren/bugfix/share-pkgconfig 
Add  to sub dirs checked for pkg-config files.
 2016-05-10 00:59:01 -07:00
Gregory Becker
c6ac709d70 WIP fixing all the things that broke when I changed the anonymous spec names 2016-05-09 17:06:21 -07:00
Gregory Becker
a7026da45c cleanup 2016-05-09 16:24:26 -07:00
Gregory Becker
222c84d9be Changed anonymous specs to have name=None instead of empty string 2016-05-09 16:22:17 -07:00
Adam J. Stewart
6665a996e6 Add documentation for rpath_flag handling 2016-05-09 17:04:14 -05:00
Adam J. Stewart
58733eb26a Comment change 2016-05-09 16:59:39 -05:00
Adam J. Stewart
b211829fb1 Testing typo 2016-05-09 16:59:39 -05:00
Adam J. Stewart
4473311bdb Allow compilers to specify their own rpath linking flags 2016-05-09 16:59:39 -05:00
Denis Davydov
7a2d65967c wrap tty.die to 80 chars 2016-05-09 22:04:34 +02:00
Todd Gamblin
73107d6b0f cleanup 2016-05-09 03:40:34 -07:00
Todd Gamblin
0c853ac3ea Make _hash private to discourage access; fix dag_hash length handling. 2016-05-09 03:39:08 -07:00
Todd Gamblin
7151fd8836 Restore cc from mainline; clean up some cflags stuff. 2016-05-09 03:37:27 -07:00
Gregory Becker
d392056457 Cleaning up print statements for debugging 2016-05-06 18:05:30 -07:00
Gregory Becker
1523ebe9f7 Working properly to display but not reuse old specs from yaml 2016-05-06 18:03:43 -07:00
Gregory Becker
06b9433351 Fixed previous commit 2016-05-06 12:35:43 -07:00
Gregory Becker
bc087cfefb Fixed database to account for hashes when reading install records 2016-05-06 12:28:46 -07:00
Gregory Becker
9f37e4c907 Made spec hashes immutable once concrete -- improved 2016-05-06 12:05:51 -07:00
Gregory Becker
addcde4f35 Made spec hashes immutable once concrete 2016-05-06 12:05:27 -07:00
Gregory Becker
2f821b9e9b temp 2016-05-05 18:13:56 -07:00
Gregory Becker
9a39ccea8f Every old spec has empty compiler flags 2016-05-05 17:49:30 -07:00
Gregory Becker
1bb7bfaf7f Versioning the database -- automatic reindex 2016-05-05 17:38:51 -07:00
Gregory Becker
3fc1344865 temp 2016-05-05 17:11:09 -07:00
Gregory Becker
11b62114bb versioning the database 2016-05-05 16:58:00 -07:00
Todd Gamblin
9fb1a9537d Merge branch 'develop' into features/cflags 2016-05-05 10:49:15 -07:00
Denis Davydov
c37ea9aff5 document usage of compiler flags properties 2016-05-05 11:56:58 +02:00
Denis Davydov
f84f04591b substitute cxx14_flag by a property with the same name to be overridden in derived classes 2016-05-05 10:48:31 +02:00
Denis Davydov
c6fb6bde40 remove cxx11_flag from Compiler as it is now substituted by a property with the same name 2016-05-05 10:47:02 +02:00
Denis Davydov
ddcb97f953 add a temporary Nag.cxx11_flag property 2016-05-05 10:44:41 +02:00
Denis Davydov
473a5542be compiler: make default openmp_flag() and cxx11_flag() die when these properties are not implemented in a derived class 2016-05-05 10:44:41 +02:00
Denis Davydov
30b65d3114 fix comment in Compiler class 2016-05-05 10:44:41 +02:00
Denis Davydov
e28ca3922f compiler: cleanup Nag.cxx11_flag and Pgi.cxx11_flag 2016-05-05 10:44:41 +02:00
Denis Davydov
d5a760776a compiler: add default implementation of openmp_flag() and css11_flag() 2016-05-05 10:44:41 +02:00
Denis Davydov
6a418cfb8d compiler: simplify Clang.is_apple 2016-05-05 10:44:41 +02:00
Denis Davydov
f2f1c49c90 compilers: one more missing import statement 2016-05-05 10:44:41 +02:00
Denis Davydov
07fd0ccc9a compiler: add Clang.is_apple property which checks if Clang is from Apple or not using version 2016-05-05 10:44:41 +02:00
Denis Davydov
592045cd54 compilers: make Intel::openmp_flag() return -openmp and -qopenmp based on the compiler version 2016-05-05 10:44:41 +02:00
Denis Davydov
3cd3052c56 compilers: minor fixes to Clang::cxx11_flag() and Clang::openmp_flag() 2016-05-05 10:44:41 +02:00
Denis Davydov
c078deaab1 compilers: add missing import statements 2016-05-05 10:44:41 +02:00
Denis Davydov
9776dc0433 compilers: add openmp_flag() method 2016-05-05 10:44:41 +02:00
Denis Davydov
2cdfe14e5a compilers: make sure cxx11_flag() is defined for all compilers 2016-05-05 10:44:41 +02:00
Todd Gamblin
13e52962ee Merge pull request #802 from gartung/std-cpp14 
Handle c++11 and c++14 correctly
 2016-05-05 01:41:55 -07:00
Gregory Becker
90b7b7ba5c Reworked compiler finding/storing/format to allow for multiple compilers with the same spec for different operating systems. TODO: fix config tests. All others up to date 2016-05-04 21:42:59 -07:00
Denis Davydov
c3317819cb mpi: add self.spec.[mpicc|mpicxx|mpifc|mpif77] to avoid hardcoding MPI wrappers names 2016-05-04 10:37:52 +02:00
Gregory Becker
4ba73dac34 Unit tests for cflags PR 2016-04-28 14:01:38 -07:00
Todd Gamblin
8cd13d4b35 Make arch command print out the platform. 2016-04-28 12:49:21 -07:00
Gregory Becker
3b84345b77 Changed yaml format for node_dicts to mitigate future incompatibilities 2016-04-28 11:05:59 -07:00
Todd Gamblin
c35994d5bf Merge pull request #850 from mathstuf/partial-downloads 
fetch_strategy: download to temporary files
 2016-04-28 10:22:43 -07:00
Gregory Becker
ae5198e5e7 Merged in current develop to cflags 042716 2016-04-27 19:38:51 -07:00
Todd Gamblin
8773a0b747 Merge pull request #847 from epfl-scitas/features/test_install_with_time 
test-install command : added elapsed time + xml is prettyprinted
 2016-04-27 17:32:21 -07:00
Ben Boeckel
e53571d2f0 fetch_strategy: download to temporary files 
This supports graceful recovery if spack is killed via a signal (e.g.,
SIGINT) while downloading a file.

Fixes #287.
 2016-04-27 14:49:27 -04:00
Brett Viren
b5ebd12fe2 Add to sub dirs checked for pkg-config files. 
This lets me build against the pure-include package Eigen.
 2016-04-27 13:45:05 -04:00
Massimiliano Culpo
b1ba869b37 test-install : fixed error in logic exposed by tests 2016-04-27 19:28:13 +02:00
Massimiliano Culpo
4846ab70d8 test-install : python 2.6 compatibility 2016-04-27 18:21:36 +02:00
Massimiliano Culpo
ec5bb88820 test-install : unit tests (hopefully) fixed for real 2016-04-27 18:06:41 +02:00
alalazo
42fab1591d test-install : fixed unit tests 2016-04-27 17:19:03 +02:00
alalazo
12dbd65f4c test-install : first draft that works 2016-04-27 13:56:32 +02:00
Benedikt Hegner
b7c064142e preserve lookup order in PATH when invoking 'spack compiler add' 2016-04-27 01:23:53 +02:00
Ben Boeckel
603467785b Compiler find docs (#831) 
* docs: mention `spack compiler find`

* docs: fix some weird wording.
 2016-04-26 10:00:54 -07:00
alalazo
99b52e6e71 test-install : wip to add other information 2016-04-26 16:41:33 +02:00
Ben Boeckel
ff9145f8a5 executable: quote arguments 
This allows command line arguments with spaces to be shown. The quoting
madness is because a single quote cannot appear within a single quoted
argument on the command line. To do so, you have to stop the single
quote argument, double quote the single quote, then open the single
quote again:

    $ echo 'before'"'"'after'
    before'after

Fixes #174
 2016-04-25 09:44:17 -04:00
Ben Boeckel
ed16bd133a compiler: add "find" subcommand (#818) 
And make "add" an alias to it.

Fixes #713.
 2016-04-23 13:34:51 -07:00
alalazo
67a01ef2ee tcl : extended conflict to be an array of strings 2016-04-22 10:50:24 +02:00
Todd Gamblin
fa02f94ca4 Regression test for not adding RPATHs with ld -r (#809, #821) 
- ld -r is only broken with rpaths on OSX; this tests that
  specific case.

- test should still work cross-platform.
 2016-04-21 23:12:33 -07:00
Denis Davydov
a0989ad672 minor cleanup of environment-modules documentation (#814) 
* minor cleanup of environment-modules documentation

* environment modules: update usage instructions
 2016-04-21 19:26:19 -07:00
Patrick Gartung
d5d1e89cbd remove use of unknown environment variable in lib/spack/env/cc (#821) 2016-04-21 19:15:54 -07:00
Adam Lyon
e92da6a6ba Handle c++11 and c++14 correctly 2016-04-19 16:52:08 -05:00
alalazo
5deaaa278c modules : added a few unit tests 2016-04-19 14:25:12 +02:00
alalazo
bce276d573 fix : missing autoload, failing validation 2016-04-18 17:51:53 +02:00
alalazo
50b148ca22 modules : tcl modules handle 'conflict' directive. This should completely cover the functionality in #498 2016-04-18 13:22:50 +02:00
alalazo
18a241fe21 modules : added hook for module specific extensions 2016-04-18 13:22:31 +02:00
alalazo
c69acfa5c8 naming work correctly 2016-04-18 13:22:04 +02:00
alalazo
00f44d558a modules : started working on naming schemes and conflict 2016-04-18 13:21:41 +02:00
alalazo
1b4c4be151 modules : category is a single word (as I am not sure how dotkit will react to spaces) 2016-04-13 12:44:51 +02:00
alalazo
c422ce7c1d modules : added doc strings, fixed minor style issues, filtered from dependencies blacklisted modules 2016-04-13 11:26:22 +02:00
alalazo
fcd58a95dd Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 2016-04-13 10:49:00 +02:00
alalazo
27280ea8be fix : added regression tests 2016-04-12 17:28:23 +02:00
alalazo
80678b2188 fix : proper update of config file (before it was discarding architectures that were not the current one) fixes #774 2016-04-12 16:54:51 +02:00
alalazo
41f365112c modules : added provenance comment in tcl header 2016-04-12 09:13:50 +02:00
alalazo
3959ca6270 modules : added possibility to blacklist or whitelist module files 2016-04-11 18:10:06 +02:00
alalazo
0e2b1359e3 modules : fixed bug preventing the creation of modulefiles autoloading only direct dependencies 2016-04-11 11:01:47 +02:00
Massimiliano Culpo
a5a5dbc408 tcl module file : added new-lines in autoload (per @glennpj bug report) 2016-04-10 13:21:41 +02:00
Mario Melara
3a281b2399 Commented out the add_x_from_string methods since we don't need to worry about it. Also, changed the way architecture is set. Todd wanted to have users be able to input just frontend and/or backend in the architecture spec. This will be able to parse those inputs. 2016-04-08 12:46:44 -07:00
Mario Melara
01a36ab333 Changed the logic of concretize. We don't have to worry about whether the part of the spec is a string since any string parsed is made into an object via the Arch constructor. Any dependencies will take the root arch spec as well 2016-04-08 12:44:27 -07:00
Mario Melara
5bcd1e7ccd If we already have the name and the platform, then we should probably go ahead and concretize it in the constructor. Else leave it as None and concretize it later. 2016-04-08 12:43:08 -07:00
Mario Melara
618b3f5f2d Changed default to default_target so the tests can pass 2016-04-08 11:18:30 -07:00
Mario Melara
277efc1dfb Added test that works on every type of combination the user could possibly enter for arch spec 2016-04-08 11:17:56 -07:00
Matthew LeGendre
1af88be371 Spack was no longer using $TMPDIR for its stage area at LLNL. Spack's directory search was unnecessarily putting candidates that contained your username at the end of its search list. 2016-04-08 11:06:14 -07:00
Mario Melara
0d1a1b7526 Changed _set_architecture so if user inputs only the target, then os is None. This prevents the os being referenced before assignment error 2016-04-08 10:29:37 -07:00
Mario Melara
6ff6c805af Assigned self.front_os, and back_os to self.default. Helps with testing. If we're on a darwin or linux machine, chances are there is no back end or front end operating system, but rather than have those as None, I just assign them the default which is detected via python platform. 2016-04-08 10:28:30 -07:00
Mario Melara
7b777568ed Added new concretization of architecture tests, test each combination of user input to make sure the correct os and target are chosen 2016-04-07 14:38:43 -07:00
Mario Melara
0ad317213c Changed architecture parser so that if user just enters in frontend or backend, then both the os and target will take those names. In the concretize method the frontend target/os and backend target/os will be picked to match each other 2016-04-07 14:38:04 -07:00
Mario Melara
07df403203 Cleaned up the concretize_architecture method by removing commented out code 2016-04-07 14:37:00 -07:00
Mario Melara
143a4d7f76 Changed default to default_target, also added frontend and backend to operating system 2016-04-07 14:36:26 -07:00
alalazo
1714f410f0 Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 2016-04-07 10:48:16 +02:00
alalazo
7dc1524c08 modules : added stub for dotkit (to be verified) 2016-04-07 10:48:05 +02:00
Glenn Johnson
b19d6ab9c5 Check for non-numeric bits in the stem. 2016-04-06 19:08:01 -05:00
Glenn Johnson
fbabfc593d Make R extensable and add a couple of packages for verification. 
Added R as a build system so that the create template will have the
correct configure line.
Added a regex for version parsing as the R URLs are a little odd.
 2016-04-06 16:44:22 -05:00
Mario Melara
99117cbc90 pulled from current repo the build_environment.py. Added module loading methods from our cray port 2016-04-06 14:07:22 -07:00
Mario Melara
918ad28a93 Changed all target values to architecture. Also added a sort_key method so that older architecture specs can be sorted with the newer ones 2016-04-06 13:58:29 -07:00
Massimiliano Culpo
4001663982 leftover from cherry-pick 2016-04-06 22:19:07 +02:00
alalazo
73b6214a13 module files : proper cleanup on uninstall fixes #216 
Conflicts:
	lib/spack/spack/test/database.py
 2016-04-06 22:10:04 +02:00
Mario Melara
749508af01 Found loops calling all_compilers that were always reading in the config file which lead to a slowdown, the fix is to cache the config file so we don't waste time re-reading the config file in again. 2016-04-06 12:05:29 -07:00
Mario Melara
3bf75fab3f Cleaned up architecture. Changed operating_system from dictionary method 2016-04-06 12:03:26 -07:00
alalazo
21b7734d92 modules : removed debug leftover 2016-04-06 17:08:31 +02:00
alalazo
7904f75782 modules : all the other strings are lower case 2016-04-06 17:05:47 +02:00
alalazo
e4cfe74887 modules : customization based on specs 2016-04-06 16:42:56 +02:00
alalazo
e993c17f89 modules : added environment modifications from configuration file 2016-04-06 14:02:27 +02:00
alalazo
d636b4fdde modules : more sensible name to blacklist environment variables 
modules : added skeleton to permit modifications based on specs
 2016-04-06 13:42:47 +02:00
Todd Gamblin
e104592e1f Merge pull request #738 from eschnett/eschnett/cleanup-cc 
Clean up cc script
 2016-04-05 10:50:45 -07:00
alalazo
670cb423f9 modules : iterating on all the dependencies doesn't reuire try/except KeyError 2016-04-05 18:44:40 +02:00
alalazo
5da37c573f modules : don't pass stream around 2016-04-05 18:41:38 +02:00
alalazo
2968b60ee0 module file : added autoload and prereq 2016-04-05 18:03:09 +02:00
alalazo
ca7d701007 module file : all the dependencies can affect the run_time environment, not only extendees 2016-04-05 16:10:04 +02:00
alalazo
c352249e30 EnvModules : narrowing the type of exceptions being "handled" 2016-04-05 14:55:05 +02:00
Erik Schnetter
4ce03b75bc Correct typo 2016-04-05 07:42:23 -04:00
alalazo
d546d828d3 module file : added filtering based on environment variable name 2016-04-05 13:20:28 +02:00
Mario Melara
9bfc83ac5c Changed so that py_platform.dist() grabs the major version number. 2016-04-04 15:36:10 -07:00
Todd Gamblin
0296f96c7b Resolves #739. Don't call setup_dependent_* for package itself. 2016-04-04 13:56:15 -07:00
Mario Melara
6d73c86209 Gives error on cori that [PrgEnv-xx, gcc/x.x.x] is not part of the schema. Changed it to oneOf : type : array to get rid of the error. 2016-04-04 13:45:15 -07:00
Mario Melara
9c071ea40d Changed modulecmd parameters. return_oe is not one of the parameters in the mainline spack repo. Changed the args to the appropriate ones in the new spack 2016-04-04 13:44:24 -07:00
Erik Schnetter
0ff059e388 Clean up comments and output messages 2016-04-04 16:00:09 -04:00
Erik Schnetter
83d6e04d39 Convert = to == in tests; untabify 2016-04-04 15:38:21 -04:00
Erik Schnetter
7bc28cc334 Clean up cc script 2016-04-04 14:33:48 -04:00
Todd Gamblin
5084130e71 Merge pull request #715 from citibeth/efischer/160401-EnvironmentModules 
Added Environment Modules
 2016-04-04 10:41:54 -07:00