Commit graph

28608 commits

Author SHA1 Message Date
Luke Diorio-Toth
0b01c8c950
py-fastpath: new package (#34142)
* py-fastpath: new package

* Update var/spack/repos/builtin/packages/py-fastpath/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-26 15:57:45 -07:00
Eric Berquist
613d0b7e8e
emacs: add variant treesitter for Emacs 29+ (#34134) 2022-11-26 23:45:00 +01:00
Wouter Deconinck
21c29ee375
prmon: Add missing depends_on py-numpy, py-pandas when +plot (#34123) 2022-11-26 23:43:25 +01:00
Luke Diorio-Toth
e236339e5a
aragorn: add newer versions and URL (#34140) 2022-11-26 23:34:59 +01:00
Luke Diorio-Toth
7a03525c35
minced: add v0.4.2 (#34141) 2022-11-26 23:30:56 +01:00
Hans Fangohr
17ca86a309
Octopus: branch for Octopus development is now "main" (#34128)
Historically, development of the Octopus code was done on the "develop" branch
on https://gitlab.com/octopus-code/octopus but now development takes place on
"main" (since Q3 2022).

The suggestion in this PR to solve the issue is to keep the spack label
`octopus@develop` as this better indicates this is the development branch on git
than `octopus@main`, but of course to use the `main` branch (there is no choice
here - the `develop` branch is not touched anymore). Sticking to
`octopus@develop` as the version label also keeps backwards compatibility.
2022-11-26 15:29:49 -07:00
marcost2
ce71a38703
nvtop: Add 2.0.3, 2.0.4, 3.0.0 and 3.0.1 (#34145)
* And add the option to compile support for Intel GPU's
2022-11-26 21:04:48 +01:00
Satish Balay
12c23f2724
Revert "url_exists related improvements (#34095)" (#34144)
This reverts commit d06fd26c9a.

The problem is that Bitbucket's API forwards download requests to an S3 bucket using a temporary URL. This URL includes a signature for the request, which embeds the HTTP verb. That means only GET requests are allowed, and HEAD requests would fail verification, leading to 403 erros. The same is observed when using `curl -LI ...`
2022-11-26 17:56:36 +00:00
Carlos Bederián
b8ae0fbbf4
amdblis: symlink libblis-mt to libblis (#32819) 2022-11-26 00:33:29 +01:00
Sebastian Ehlert
6b5c86e0be
toml-f: add 0.2.4 and 0.3.1 (#34025) 2022-11-25 16:29:58 -07:00
Victoria Cherkas
1ed1b49c9b
metkit, fdb: Add latest versions (#33289) 2022-11-25 23:54:51 +01:00
petertea
4265d5e111
Update TotalView versions and website (#33418)
Co-authored-by: Peter Thompson <thompson81@llnl.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-11-25 23:42:56 +01:00
snehring
8c0fb91d4e
ffmpeg: adding version 5.1.2 (#33758)
* ffmpeg: add version 5.1.2 and switch to conditional variants

Also: py-torchvision: restrict ffmpeg dependency
2022-11-25 23:37:17 +01:00
Thomas Madlener
567532b9e5
lcio: Add new version and restrictions on c++ standard (#33997) 2022-11-25 23:08:23 +01:00
Adam J. Stewart
47d59e571e
py-pandas: add v1.5.2 (#34091) 2022-11-25 23:03:16 +01:00
Adam J. Stewart
93ff19c9b7
py-pytorch-lightning: add v1.8.3 (#34096) 2022-11-25 22:59:39 +01:00
Harmen Stoppels
2167cbf72c
Track locks by (dev, ino); close file handlers between tests (#34122) 2022-11-25 10:57:33 +01:00
Sergey Kosukhin
7a5e527cab
zlib: fix shared libraries when '%nvhpc' (#34039) 2022-11-24 20:10:18 +01:00
iarspider
a25868594c
Add checksum for py-uncertainties 3.1.7 (#34116) 2022-11-24 12:11:58 -06:00
Brent Huisman
dd5263694b
Arbor: Yank v0.5 (#34094)
v0.5 does not build due to a change in setting `arch` introduced in v0.5.2, compatibility with which was not kept in `arbor/package.py`. Since v0.5.2 is compatible with `arbor/package.py`, and is API compatible with v0.5, any users relying on v0.5 can rely on v0.5.2.
2022-11-24 11:19:32 +01:00
Thomas-Ulrich
5fca1c9aff
hipsycl: add v0.9.3 (#34052) 2022-11-23 23:14:01 -07:00
Tim Haines
1d7393c281
dyninst: add checksums for all supported versions (#34051) 2022-11-24 03:45:56 +01:00
Jen Herting
f0bc551718
New package: py-kt-legacy (#34104)
* first build of keras-tuner with dataset kt-legacy

* [py-kt-legacy] fixed homepage

* [py-kt-legacy] depends on setuptools

* [py-kt-legacy] fixed import

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: Sid Pendelberry <sid@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-11-23 19:26:21 -07:00
Adam J. Stewart
46b9a09843
py-cartopy: older versions don't support newer matplotlib (#34109) 2022-11-24 02:44:20 +01:00
Stephen Sachs
c0898565b9
openfoam: Fix openfoam@2012_220610 %intel (add #include <array>) (#34088) 2022-11-24 02:34:40 +01:00
Benjamin Meyers
3018e7f63d
Add py-urwid@2.1.2 (#34103)
* Add py-urwid@2.1.2

* [@spackbot] updating style on behalf of meyersbs
2022-11-23 19:25:02 -06:00
Satish Balay
dfa1a42420
petsc, slepc: enable parallel builds (#34024) 2022-11-24 02:16:20 +01:00
Adam J. Stewart
2c8ab85e6a
gnuplot: fix build with Apple Clang (#34092) 2022-11-24 01:33:33 +01:00
Nicolas Cornu
b2505aed5c
HighFive: bump to 2.6.2 (#34090) 2022-11-24 00:20:36 +01:00
Valentin Volkl
7847d4332e
docs: update info on XCode requirements (#34097) 2022-11-24 00:20:09 +01:00
Massimiliano Culpo
70bcbba5eb
ecflow: polish recipe (#34043) 2022-11-23 21:38:37 +01:00
Tom Scogland
0182603609
Control Werror by converting to Wno-error (#30882)
Using `-Werror` is good practice for development and testing, but causes us a great
deal of heartburn supporting multiple compiler versions, especially as newer compiler
versions add warnings for released packages.  This PR adds support for suppressing
`-Werror` through spack's compiler wrappers.  There are currently three modes for
the `flags:keep_werror` setting:

* `none`: (default) cancel all `-Werror`, `-Werror=*` and `-Werror-*` flags by
  converting them to `-Wno-error[=]*` flags
* `specific`: preserve explicitly selected warnings as errors, such as
  `-Werror=format-truncation`, but reverse the blanket `-Werror`
* `all`: keeps all `-Werror` flags

These can be set globally in config.yaml, through the config command-line flags, or
overridden by a particular package (some packages use Werror as a proxy for determining
support for other compiler features).  We chose to use this approach because:

1. removing `-Werror` flags entirely broke *many* build systems, especially autoconf
   based ones, because of things like checking `-Werror=feature` and making the
   assumption that if that did not error other flags related to that feature would also work
2. Attempting to preserve `-Werror` in some phases but not others caused similar issues
3. The per-package setting came about because some packages, even with all these
   protections, still use `-Werror` unsafely.  Currently there are roughly 3 such packages
   known.
2022-11-23 12:29:17 -08:00
Jen Herting
bf1b846f26
[py-antlr4-python3-runtime] Added versions 4.9.3 and 4.10 (#34102)
* Working updates to py-antlr4-python3-runtime and py-omegaconf

* [py-antlr4-python3-runtime] added version 4.9.3

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: Benjamin Meyers <bsmits@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-11-23 12:30:11 -07:00
Harmen Stoppels
d06fd26c9a
url_exists related improvements (#34095)
For reasons beyond me Python thinks it's a great idea to upgrade HEAD
requests to GET requests when following redirects. So, this PR adds a
better `HTTPRedirectHandler`, and also moves some ad-hoc logic around
for dealing with disabling SSL certs verification.

Also, I'm stumped by the fact that Spack's `url_exists` does not use
HEAD requests at all, so in certain cases Spack awkwardly downloads
something first to see if it can download it, and then downloads it
again because it knows it can download it. So, this PR ensures that both
urllib and botocore use HEAD requests.

Finally, it also removes some things that were there to support currently
unsupported Python versions.

Notice that the HTTP spec [section 10.3.2](https://datatracker.ietf.org/doc/html/rfc2616.html#section-10.3.2) just talks about how to deal
with POST request on redirect (whether to follow or not):

>   If the 301 status code is received in response to a request other
>   than GET or HEAD, the user agent MUST NOT automatically redirect the
>   request unless it can be confirmed by the user, since this might
>   change the conditions under which the request was issued.

>   Note: When automatically redirecting a POST request after
>   receiving a 301 status code, some existing HTTP/1.0 user agents
>   will erroneously change it into a GET request.

Python has a comment about this, they choose to go with the "erroneous change".
But they then mess up the HEAD request while following the redirect, probably
because they were too busy discussing how to deal with POST.

See https://github.com/python/cpython/pull/99731
2022-11-23 19:26:24 +00:00
kwryankrattiger
5d2c9636ff
E4S: Conservatively add ecp-data-vis-sdk (#33621)
* E4S: Conservatively add ecp-data-vis-sdk

* Remove ascent from CUDA SDK stack to stop hanging on Dray

* Adios2: Newer FindPython uses Python_EXECUTABLE
2022-11-23 11:01:30 -08:00
Harmen Stoppels
63e4406514
Revert "gitlab: Add shared PR mirror to places pipelines look for binaries. (#33746)" (#34087)
This reverts commit 5c4137baf1.
2022-11-23 10:41:52 -08:00
Jen Herting
d56380fc07
New package: py-imagecodecs (#34098)
* [libjpeg-turbo] Added version 2.1.3

* [imagecodecs] Added jpeg deependency commented outconglicting libraries

* [WIP]

* [py-imagecodecs] modifying setup.py to work with spack install locations

* [py-imagecodecs] Removed comments and unneeded dependencies

* [py-imagecodecs] removed some comments and fixed up some flake8 complaints

* [py-imagecodecs] flake8

* [py-imagecodecs] fixed import

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-11-23 10:39:45 -07:00
Adam J. Stewart
f89cc96b0c
libelf: fix build on macOS arm64 (#34036) 2022-11-23 09:27:44 -07:00
iarspider
cf952d41d8
Add checksum for py-cffi 1.15.1 (#34081) 2022-11-23 08:52:21 -07:00
iarspider
5f737c5a71
Add checksum for py-parsimonious 0.10.0 (#34079) 2022-11-23 08:59:30 -06:00
Bernhard Kaindl
a845b1f984
openloops: add check for added Fortran compiler (#34014) 2022-11-23 07:59:13 -07:00
Henning Glawe
b8d059e8f4
berkelygw: use mpi variant for scalapack (#33948)
The package.py assumed "+mpi" in many places, without checking for the variant.
This problem went undetected, as a hard dependency on scalapack pulled an mpi
implementation into the dependency chain (this is also fixed).

Also, the +mpi variant is used select between serial and parallel mode:

It has to enable MPI and ScaLAPACK: They are inter-dependent. Compile
fails because of checks for the other if the other is not enabled.

Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2022-11-23 07:42:03 -07:00
Cory Bloor
1006c77374
rocm: add minimum versions for amdgpu_targets (#34030) 2022-11-23 14:23:38 +01:00
Alec Scott
38d4fd7711
Add conflicts statements to flux-core to limit builds to linux based platforms (#34068) 2022-11-23 06:08:46 -07:00
Harmen Stoppels
643ce586de
libxcrypt: add v4.33 (#34069) 2022-11-23 05:36:47 -07:00
Adam J. Stewart
5b3b0130f2
Build System docs: consistent headers (#34047) 2022-11-23 13:35:55 +01:00
Harmen Stoppels
55c77d659e
make/ninja: use the right number of jobs (#34057) 2022-11-23 12:35:15 +01:00
Alexander Knieps
fe1c105161
capnproto: update to v0.10.2 (#34063)
Co-authored-by: Alexander Knieps <a.knieps@fz-juelich.de>
2022-11-23 12:32:10 +01:00
Bernhard Kaindl
09f2b6f5f5
boost: At least with older Xcode, boost can't build with lzma (#34075)
Reference: https://lists.boost.org/Archives/boost/2019/11/247380.php
As reported at the end of #33998 and this link, liblzma on older Xcode on
MacOSX 10 misses _lzma_cputhreads, so boost's can't use liblzma on those.
2022-11-23 03:36:22 -07:00
Matthieu Dorier
73fe21ba41
[mochi-margo] fixed dependency to Argobots (#34082) 2022-11-23 03:36:05 -07:00