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Author SHA1 Message Date
Michael Kuron
55300d1181 pnfft: new package (#2646) 
* pnfft: new package

* Convert some packages with overridden install from AutotoolsPackage to Package

* pnfft: fix URL

* Switch FFTW-derived packages back to AutotoolsPackage

* Disable unneeded build phases in FFTW and derived packages

* Separate build phases for FFTW and derived packages

* Fix broken merge

* fftw: pfft_patches for 3.3.6

* fftw: address @adamjstewart’s review comments
 2017-03-25 14:27:52 -05:00
Brian Van Essen
3af971165a Added a package for Nvida NCCL (#3552) 2017-03-24 17:53:16 -07:00
Adam J. Stewart
6461737bba Add latest version of util-linux (#3551) 2017-03-24 16:44:54 -05:00
Adam J. Stewart
821155470c Add mozjs package (#3550) 2017-03-24 16:31:59 -05:00
Adam J. Stewart
c97d79b150 Add old version of zlib (#3549) 2017-03-24 16:31:31 -05:00
Adam J. Stewart
5297d3d2ff Add NSPR package (#3548) 2017-03-24 16:23:01 -05:00
Adam J. Stewart
78301396f0 Add linux-headers package (#3547) 2017-03-24 16:22:36 -05:00
Adam J. Stewart
50f4f0827d Add libcap package (#3546) 2017-03-24 16:02:01 -05:00
Adam J. Stewart
0b4c39a9e0 Various updates to the intltool package (#3545) 2017-03-24 15:45:08 -05:00
Adam J. Stewart
df777bf077 Add autogen package (#3542) 2017-03-24 15:44:34 -05:00
Adam J. Stewart
eca8f548dc coreutils can no longer be built in-source (#3543) 2017-03-24 15:44:01 -05:00
George Hartzell
b5acd5e44b Fix r package, tk no longer has an X variant (#3544) 
Tk recently lost its X variant (it now always uses X).

That broke r, this commit fixes it.

Tested on CentOS 7.
 2017-03-24 15:43:25 -05:00
Adam J. Stewart
08799eac23 Add latest version of GNU Guile (#3541) 2017-03-24 15:20:52 -05:00
Adam J. Stewart
a60210f6b2 Add latest version of bdw-gc (#3539) 2017-03-24 15:20:25 -05:00
Adam J. Stewart
8a463c07ea Convert libatomic-ops to AutotoolsPackage (#3540) 2017-03-24 15:13:05 -05:00
Adam J. Stewart
3c96749622 Add latest version of libunistring (#3538) 2017-03-24 14:57:42 -05:00
Adam J. Stewart
1fe987949f Clean up the gcc package (#3511) 
* Clean up the gcc package

* Add preliminary testing support

* Older versions of GCC do not depend on MPC

* DejaGnu 1.4.4 cannot be built in parallel

* Fix GCC test dir

* Add two more deps required to run the testsuite
 2017-03-24 14:56:22 -05:00
Mark Olesen
268d48b407 CONFIG: update mxml versions (#3534) 2017-03-24 14:22:26 -05:00
Jimmy Tang
be5bb33aac Initial add of dev package (#3533) 
* Initial add of dev package

* Use a more acceptable URL
 2017-03-24 13:12:57 -05:00
健美猫
c68295df2c Add cuda support for gromacs. (#3527) 2017-03-24 07:48:08 -05:00
George Hartzell
4a36f23fa8 Add release info for git v2.12.1 (#3532) 
Add info for git and git-manpages.

Built/tested on CentOS7.
 2017-03-23 17:43:28 -05:00
Adam J. Stewart
929a3317e9 Add env vars for Intel VTune Amplifier (#3531) 
* Add env vars for Intel VTune Amplifier

* Flake8 fix
 2017-03-23 15:58:12 -05:00
Adam J. Stewart
10b49fd845 Add DejaGnu package (#3518) 2017-03-23 14:35:38 -05:00
Adam J. Stewart
4ecfc39e1e Add Expect package (#3517) 
* Add Expect package

* Ignore patches during flake8 tests for package.py files

* Remove controversial changes
 2017-03-23 14:35:11 -05:00
Adam J. Stewart
ace890af49 Only configure requested lammps features (#3526) 
* Only configure requested lammps features

* Run configure from root and make from src
 2017-03-23 12:28:17 -05:00
Adam J. Stewart
4e8a59a062 Add patch to fix xcb-proto make check (#3520) 2017-03-22 16:17:01 -05:00
Howard Pritchard
7c82db07ac Open MPI: add new packages (#3519) 
there were various updated packages, both for the 2.x, 2.0.x,
and 1.10.x release branches of Open MPI.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
(cherry picked from commit 3b671935783fc3af76dc642a54461c2f02ab8ebf)
 2017-03-22 16:16:32 -05:00
Jeffrey Salmond
f225741d07 configure vtk with external hdf5 and netcdf packages (#3504) 
* configure vtk with external hdf5 and netcdf packages

* remove ~mpi constraints from hdf5 and netcdf
 2017-03-22 14:53:05 -05:00
Erik Schnetter
7e7045e0ca llvm: Install utilities into libexec (#3516) 2017-03-22 09:01:10 -07:00
Jimmy Tang
31e28f9662 Update googletest (#3514) 2017-03-22 06:57:20 -05:00
Gregory Lee
606c5fbc5f patch readline to fix ipython seg fault (#3512) 2017-03-21 16:24:13 -07:00
Adam J. Stewart
07397e8ef7 Convert gettext to AutotoolsPackage (#3510) 2017-03-21 17:40:45 -05:00
Adam J. Stewart
657110f9d7 Convert isl to AutotoolsPackage (#3507) 2017-03-21 12:11:03 -05:00
Adam J. Stewart
ed9dec2259 Add recommended patches to mpfr package (#3506) 2017-03-21 11:25:14 -05:00
Kim Serradell
3923bdca90 Replacing failing git clone by valid url (#3505) 
* Replacing failing git clone by valid url

* Moving to previous version package (0.163)

* Removing automake and autoconf dependencies and adding url_list to pick up newer versions

* Corrected typo

* Reorder versions and removed libtool
 2017-03-21 10:50:34 -05:00
健美猫
babeb32c6d Add package openfst. (#3324) 2017-03-21 09:53:58 -05:00
Erik Schnetter
75c6c9f1ee llvm: Don’t copy “prefix/bin” into “prefix” during install (#3460) 2017-03-20 20:46:29 -05:00
Adam J. Stewart
777acb4c03 Fix: setuptools is a runtime dependency for pudb (#3502) 2017-03-20 18:08:45 -05:00
Adam J. Stewart
d31bbe450b Add latest version of binutils (#3500) 2017-03-20 18:07:37 -05:00
Michael Kuhn
0be9cee984 Update leveldb to 1.20 (#3441) 2017-03-20 15:07:24 -05:00
Erik Schnetter
79d0e7a5d7 gasnet: Update to 1.28.2 (#3496) 2017-03-20 15:05:23 -05:00
Erik Schnetter
ae8380c4fb cereal: Update to 1.2.2 (#3499) 2017-03-20 15:05:02 -05:00
Erik Schnetter
91dd854694 jemalloc: Update to 4.5.0 (#3497) 2017-03-20 15:04:34 -05:00
Erik Schnetter
68a4706b1e py-yt: Update to 3.3.5 (#3498) 2017-03-20 15:04:17 -05:00
Erik Schnetter
22f3c9de84 fftw: Update to 3.3.6-pl1 (#3495) 2017-03-20 12:35:08 -07:00
健美猫
1655161ebb Add ffmpeg package. (#3470) 2017-03-19 10:12:34 -05:00
健美猫
fb248f17fb Substitue ftp:// with http:// (#3491) 2017-03-19 10:11:06 -05:00
健美猫
14c181e480 Add new version for intel package: 16.0.4 17.0.2 . (#3490) 2017-03-19 07:57:06 -05:00
Erik Schnetter
a0ab3c2523 hdf5: Clean up building self-tests (#3483) 
* hdf5: Clean up building self-tests

* hdf5: Clean up running self-tests
 2017-03-18 20:14:47 -05:00
Adam J. Stewart
4866b4592f Add missing dependencies to gawk (#3481) 
* Add missing dependencies to gawk

* Fix make check

* Add mawk packages and awk virtual dependency

* Use mawk instead of gawk to build ncurses

* Rearrange order of patches and dependencies
 2017-03-18 19:13:32 -05:00
Adam J. Stewart
9d0a3c6b05 Fix deptype of various dependencies on Python packages (#3486) 2017-03-18 15:20:16 -05:00
Javier
6b97f538cf Adding new packages: py-argparse and py-importlib (#3488) 2017-03-18 13:45:29 -05:00
Adam J. Stewart
773357e20f setuptools is a runtime dependency of virtualenv (#3485) 2017-03-17 16:25:48 -05:00
Erik Schnetter
a2235fed41 julia: Create cacert directory manually to ensure correct permissions (#3482) 2017-03-17 16:07:49 -05:00
Javier
b0d9088603 Adding new package: py-future (#3401) 
* Adding new package: py-future

* Commenting out deps needed when installing python@2.6
 2017-03-17 13:59:38 -05:00
Adam J. Stewart
5f13e40655 Add package for ESMF (#2831) 
* Add package for ESMF

* Apparently mvapich2 is supported?
 2017-03-17 09:21:25 -05:00
Adam J. Stewart
2c39f16d44 Add version constraints to VTK patch (#3357) 2017-03-17 09:19:44 -05:00
Erik Schnetter
19b3afebc9 hpx5: Convert to AutotoolsPackage, several updates (#3456) 
* hpx5: Convert to AutotoolsPackage, several updates

- convert to AutotoolsPackage
- add several variants
- add several dependencies
- add new version 4.0.0
- don’t set compiler flags explicitly

* hpx5: Don’t import os

* hpx5: Clean up configure arguments

* hpx5: Correct libffi configure declaration

Also add new variant “+instrumentation”.

* hpx5: Correct CUDA, MPI, OpenCL configuration

* hpx5: Use built-in libffi

Spack’s libffi installs its headers in a strange place, and hpx5 can’t pick them up.
 2017-03-17 09:11:02 -05:00
Erik Schnetter
e7bf8034b0 libpciaccess: Convert to AutotoolsPackage, remove Darwin work-around (#3459) 
* libpciaccess: Convert to AutotoolsPackage, remove Darwin work-around

Other packages that depend on libpciaccess can do so via a conditional dependency (via a variant); we don’t need a dummy package for Darwin any more.

* Disable libpciaccess dependency on non-Darwin platforms

* hwloc: Remove direct dependency on libpciaccess
 2017-03-17 09:09:09 -05:00
Michael Kuhn
1124bdc99e Add packages libbson and libmongoc (#3440) 2017-03-16 23:16:30 -07:00
Erik Schnetter
9c1885022e simulationio: New package (#3422) 
* simulationio: New package

* simulationio: Rename development version to “develop”

* simulationio: Try to make flake8 happy

* simulationio: Correct flake8 error

* simulationio: Extend Python

* simulationio: Remove unused imports
 2017-03-16 23:06:47 -07:00
Adam J. Stewart
386462c0cb Add latest version of NCO (#3469) 2017-03-16 21:39:41 -07:00
Brian Van Essen
3f17f761fe Py keras extension (#3468) 
* Added support for building Theano with GPU support.  Added a package
for the libgpuarry libary needed for Theano.

* Added dependency on py-pexpect package which ipython requires.
 2017-03-16 21:24:36 -07:00
Todd Gamblin
328b2142f5 Fix Qt4 build on Yosemite (10.11) (#3444) 2017-03-16 17:55:06 -07:00
Erik Schnetter
4f05fb4b3f gasnet: Convert to AutotoolsPackage, update (#3455) 
* gasnet: Convert to AutotoolsPackage, update

- convert to AutotoolsPackage
- add new version 1.28.0
- create variants for IB and MPI support

* gasnet: Don’t specify prefix explicitly

* gasnet: Add missing variant descriptions

* gasnet: Correct syntax error
 2017-03-16 18:12:25 -05:00
Adam J. Stewart
99ef28b5d2 Add latest version of lmod (#3467) 2017-03-16 12:50:30 -05:00
Adam J. Stewart
4c7a721341 Add latest version of git, convert to AutotoolsPackage (#3466) 2017-03-16 12:50:10 -05:00
Erik Schnetter
2eda08f192 julia: New variant +simd (#3458) 2017-03-16 11:49:37 -05:00
Erik Schnetter
83fe65e121 hwloc: Add missing dependencies (#3457) 
* hwloc: Add missing dependencies

- add several missing dependencies
- add variants for various features
- add new version 1.11.6

* hwloc: Add descriptions to variants
 2017-03-16 11:48:39 -05:00
Erik Schnetter
53ca628d8b qthreads: New version 1.12 (#3464) 2017-03-16 10:08:48 -05:00
Erik Schnetter
a609d22b95 pocl: Introduce virtual package “opencl” (#3461) 
OpenCL is a standard like MPI, with several versions and several implementations.
 2017-03-16 09:47:46 -05:00
Erik Schnetter
d6a7000aee py-numpy: Correct typos in comment (#3462) 2017-03-16 09:45:09 -05:00
Erik Schnetter
19a90ccc19 py-scipy: New version 0.19.0 (#3463) 2017-03-16 09:39:26 -05:00
Javier
9e1e3a203a Adding new package: py-jpype (#3402) 
* Adding new package: py-jpype

* Moving jdk dependency
 2017-03-16 06:37:09 -05:00
Adam J. Stewart
4518ff0150 Add latest version of lua (#3454) 2017-03-15 21:28:56 -05:00
Adam J. Stewart
a40ccc24d6 Add latest version of pcre (#3453) 2017-03-15 21:28:29 -05:00
Adam J. Stewart
72890f4840 Add latest version of readline (#3452) 2017-03-15 20:36:24 -05:00
Adam J. Stewart
caf209bdd7 Add latest version of libiconv (#3451) 2017-03-15 20:08:01 -05:00
Gregory Lee
d0060bc318 added parallel studio composer edition 2017.2 (#3450) 2017-03-15 18:51:18 -05:00
Adam J. Stewart
7be728d551 Add latest version of libsigsegv (#3449) 2017-03-15 18:00:17 -05:00
Adam J. Stewart
9f1af5913b Add latest version of cURL (#3447) 2017-03-15 16:01:10 -05:00
Adam J. Stewart
41114c3e76 Add latest version of Intel Parallel Studio (#3445) 2017-03-15 13:46:48 -05:00
健美猫
9af7bef10b Add version 4.0 for foam-extend. (#3442) 2017-03-15 13:02:36 -05:00
Adam J. Stewart
dca4d2b15e Consistent docs and usage of env mod methods (#3351) 2017-03-14 22:26:44 -07:00
Adam J. Stewart
64bd7adefa Fix vim ~gui behavior (#3432) 2017-03-14 07:45:17 -07:00
Adam J. Stewart
5430d45db1 Add latest version of openpyxl and missing dependencies (#3431) 2017-03-14 07:44:46 -07:00
Adam J. Stewart
b203058891 Fix zlib %pgi build (#3436) 2017-03-14 07:43:54 -07:00
Erik Schnetter
415c9398d2 ncurses: Use gawk as awk (#3425) 2017-03-14 07:43:02 -07:00
Erik Schnetter
9121599145 New package pocl (#3413) 
* New package pocl

* pocl: Update dependencies, add self-test

* pocl: Don't require LLVM shared libraries

LLVM build fails with shared libraries.

* Add patch

* Update

* Update

* Make build and install work; install test still fails

* Split pocl into pocl proper and pocl-test

* Add debug output

* pocl: Update to 0.14-rc

* pocl: Correct flake8 error

* pocl: Heed code review recommendations

* pocl: Add newline at end of file

* pocl: Correct flake8 error

I don’t want to use an even longer line by putting the whole variant declaration onto a single line, nor do I think that having an overlong line and adding `# noqa` at the end is more readable than splitting a string over three lines.

* pocl: Correct dependency type for libtool
 2017-03-12 12:52:18 -05:00
Denis Davydov
0b948da74c gnuplot: fixed broken package and add variants (#3185) 
* gnuplot: fix conflict in header via a simple patch; add variants

* gtkplus: fix missing dependency

* wx: fix build on macOS; switch to AutotoolsPackage

* gnuplot: add missing dependencies

* wx: put back parallel build
 2017-03-12 09:37:26 -05:00
Erik Schnetter
d8f1446265 julia: New version 0.5.1 (#3418) 
* julia: New version 0.5.1

* julia: Define url on a single line
 2017-03-11 21:04:44 -06:00
Erik Schnetter
9a14597493 autoconf: Correct m4 dependency declaration (#3415) 
* autoconf: Correct m4 dependency declaration

Closes #3406.

* autoconf: Correct m4 dependency type

* autoconf: Update comment
 2017-03-11 21:04:18 -06:00
Erik Schnetter
02db630985 hwloc: Disable OpenCL (#2854) 
* hwloc: Disable OpenCL

* hwloc: Convert `install` to `configure_args`
 2017-03-11 20:59:06 -06:00
Erik Schnetter
41a3957540 libxsmm: Add header-only variant (#3419) 
* libxsmm: Add header-only variant

* libxsmm: Implement requestes from code review

* libxsmm: Correct error in previous simplification

* libxsmm: Raise error if `header-only` variant is not supported by version

* libxsmm: Correct flake8 errors
 2017-03-11 16:00:47 -06:00
Erik Schnetter
18ac76b320 bison: Declare m4 dependency correctly (#3424) 
* bison: Declare m4 dependency correctly

* bison: Declare m4 as run-time dependency
 2017-03-11 15:58:57 -06:00
Erik Schnetter
23d4a60639 funhpc: New package (#3421) 
* funhpc: New package

* funhpc: Rename development version to “develop”

* funhpc: Try to make flake8 happy

* funhpc: Correct flake8 error
 2017-03-11 15:58:09 -06:00
Erik Schnetter
7e3eaba899 hdf5-blosc: Update compiler selection in self-test (#3417) 2017-03-11 12:50:54 -06:00
Erik Schnetter
093ffdfa45 cuda: Allow using unknown compilers (#3416) 
* cuda: Allow using unknown compilers

* cuda: Correct flake8 error
 2017-03-11 12:42:02 -06:00
Erik Schnetter
b30637e1ce py-yt: New version 3.3.4 (#3420) 2017-03-11 12:39:33 -06:00
Erik Schnetter
48640cf2fa binutils: Add gettext dependency (#3423) 2017-03-11 12:38:51 -06:00
Elsa Gonsiorowski
eef2021d91 pdsh basic package (#3408) 
* added basic pdsh package

* need link to actual archive file
 2017-03-11 09:12:26 -06:00
Todd Gamblin
e3101808ae Make multimethods work with inheritance. (#3411) 
Previously, this would fail with a NoSuchMethodError:

    class Package(object):
        # this is the default implementation
        def some_method(self):
            ...

    class Foo(Package):
        @when('platform=cray')
        def some_method(self):
            ...

        @when('platform=linux')
        def some_method(self):
            ...

This fixes the implementation of `@when` so that the superclass method
will be invoked when no subclass method matches.

Adds tests to ensure this works, as well.
 2017-03-11 05:48:36 -08:00
Mario Melara
15f80ed15c Add paths to PKG_CONFIG_PATH to find cray .pc file (#3378) 
* Add paths to PKG_CONFIG_PATH to find cray .pc file

Adds two paths: /usr/lib64/pkgconfig and /usr/local/lib64/pkgconfig.

cray pkg-config looks at two different paths which are not included
in PKG_CONFIG_PATH environment variable. This PR addresses #3167.

* Flake8 fixes

* flake8 fix again
 2017-03-10 16:29:20 -08:00
Javier
68f5b9adf8 Adding new package: py-lxml (#3403) 
* Adding new package: py-lxml

* Adding missing version
 2017-03-10 13:18:17 -06:00
Javier
a1e8644f63 Adding new package: py-elasticsearch (#3398) 
* Adding new package: py-elasticsearch

* Adding missing dependency
 2017-03-10 12:48:41 -06:00
Javier
0c9ddeafe4 Adding new package: py-keras (#3400) 
* Adding new package: py-keras (and dependencies)

* Fixing dependencies
 2017-03-10 12:48:22 -06:00
Jon Rood
6066526492 Confining CPPFLAGS=-P to only happen for GCC. (#3404) 2017-03-10 12:48:03 -06:00
Javier
22d7f9da40 Adding new package: py-py4j (#3390) 
* Adding new package: py-py4j

* Adding missing depedency
 2017-03-10 07:30:28 -06:00
Javier
a7f35b3db6 Adding new package: py-joblib (#3399) 2017-03-10 07:30:01 -06:00
Javier
84db03b5a8 Adding new package: vdt (#3396) 2017-03-10 07:08:41 -06:00
Javier
901f044bbf Adding new package: vc (#3397) 2017-03-10 07:08:17 -06:00
Javier
f0fd0156de Adding new package: py-pathos (and dependencies) (#3391) 
* Adding new package: py-pathos (and dependencies)

* Fixing required versions
 2017-03-09 17:28:32 -06:00
George Hartzell
611df0bebf New gcc uses C++14 mode, this fixes implicit conversion (#3392) 
* New gcc uses C++14 mode, this fixes implicit conversion

The issue is described in depth [here][desc].  C++14 no longer
allows implicit conversion from iostream classes to void*.

This patch comes directly from [PR #6][patch].

[desc]: http://stackoverflow.com/questions/38659115/make-fails-with-error-cannot-convert-stdistream-aka-stdbasic-istreamchar
[patch]: https://github.com/agordon/libgtextutils/pull/6

* mend
 2017-03-09 17:27:56 -06:00
Javier
ebd5066d07 Adding new package: py-4suite-xml (#3389) 2017-03-09 13:44:37 -06:00
Gregory Lee
604b75c1f9 created elf virtual package and updated dependent packages (#3317) 
* created elf virtual package and updated dependent packages
* added `hide_files` context manager to handle moving files.
 2017-03-09 10:36:32 -08:00
Erik Schnetter
2ac343e92e cosmomc: New package CosmoMC (#3292) 
* cosmomc: New package CosmoMC

* cosmomc: Improve version numbering scheme

* planck-likelihood: New package

* cosmomc: Pacify flake8

* cosmomc: Code cleanup as requested in the review

* cosmomc: Various updates suggested during review

* cosmomc: Limit compiler versions (as documented in the build instructions)

* cosmomc: Correct flake8 error

* cosmomc: Use `libs` instead of `lapack_libs`

* planck-likelihood: Make makefile output more verbose and readable

* planck-likelilhood: Correct order of libraries when calling linker

* cosmomc: Clean up check for suitable compiler

* planck-likelihood: Use modern mechanism to set environment variables
 2017-03-09 08:14:13 -06:00
Brian Van Essen
21e913bac5 Updated the spectrum-mpi package to get the right compiler names when (#3381) 
we use spectrum.
 2017-03-09 08:11:59 -06:00
Michael Kuhn
44b165461a udunits2: Add build dependency on texinfo (#3383) 2017-03-09 08:11:23 -06:00
Michael Kuhn
c1f8fbed34 ncl: Update to 6.4.0 (#3384) 2017-03-09 08:11:06 -06:00
Javier
e8c8e444e8 Fixing checkum of py-coverage v4.3.4 (#3386) 2017-03-09 08:10:45 -06:00
Massimiliano Culpo
f2c1cbdcd3 patch: configure and build out of source fixes #3387 (#3388) 2017-03-09 07:40:05 -06:00
Brian Van Essen
acf95c92a6 Fixes the Elemental and LBANN packages to conform to the new syntax (#3382) 
introduced by PR https://github.com/LLNL/spack/pull/1875
 2017-03-08 14:32:26 -06:00
healther
bacb60457d Add package py-guiqwt and dependencies (#3334) 
* add package py-guiqwt with dependencies

* fixed url

* fixed url2

* Update package.py

* Update package.py
 2017-03-08 10:18:57 -06:00
AP97
3d9cd72e33 Adding farmhash package from google (#3239) 
* Adding farmhash package from google
 2017-03-07 07:02:08 -08:00
Aidan San
5d1a16805e Added gemmlowp package (#3240) 2017-03-07 07:00:53 -08:00
Hans Pabst
2ae1ebbbe8 LIBXSMM 1.7.1 (#3371) 
* Cleanup list of offered versions (only the latest update release of each minor version is kept: 1.4.4, 1.5.2, 1.6.6, 1.7.1); introduced master revision (via Git). Slightly more selective installation of the documentation; copy README.md and LICENSE files to documentation folder. Removed outdated build options (make_args); generally stay with LIBXSMM's defaults (general purpose build). Introduced one build variant ("debug").

* Incorporated comments of PR #3371 (https://github.com/LLNL/spack/pull/3371).

* Fixed flake8 complaints.

* Made the full list of versions available starting with version 1.4 (there are earlier releases, however those have been released before the Spack specification became available; original spec. also started with 1.4).

* Made DBG and TRACE actually two separate arguments.
 2017-03-07 06:58:17 -08:00
Erik Schnetter
55e1550a59 openblas: Run tests only when requested (#3370) 
The tests fail on some systems (e.g. Comet at SDSC) that impose limits on the number of processes or threads one can run simultaneously on the head node. Thus the tests should not be run by default.
 2017-03-05 12:29:02 -06:00
Barry Smith
00d6cb9a8f Fixes veclibfort which was broken by PR1875 (#3368) 
Funded-by: IDEAS
Project: IDEAS/xSDK
Thanks-to: Adam J. Stewart
 2017-03-05 07:34:38 -06:00
healther
a7bab8a418 add package py-py-cpuinfo (#3339) 
* add package py-py-cpuinfo

* renamed package to py-cpuinfo
 2017-03-04 20:12:37 -06:00
Adam J. Stewart
a2d70a45fb Allow find_libraries to accept lists or strings (#3363) 
* Allow find_libraries to accept lists or strings

* Convert one more example from list to string
 2017-03-04 11:23:57 -06:00
Massimiliano Culpo
192a4b30f0 atlas: added a missing property decorator (#3366) 2017-03-04 10:24:48 -06:00
Denis Davydov
a36ed7fb9b fix blas/lapack usage after PR 1875 (#3365) 2017-03-04 09:42:02 -06:00
serbanmaerean
c3ac86310e ADIOS: change subclassing from Package to AutotoolsPackage (#3230) 
* ADIOS: change the invocation of python script that generates test files

The python script ADIOS*/utils/gpp/gpp.py is invoked directly in the
ADIOS*/tests/genarray/Makefile and the name of the python interpreter
can be quite long if it is one built under spack, i.e. longer than the
80 characters allowed by the #! line in bash.  The name of the shbang
line is truncated at 80 characters and bash cannot find the python
interpreter specified.

This fix changes how the script is executed, by invoking it under
python. This way, the shbang line is ignored.

* adios: fixed flake8 errors from previous commit.

* adio: Switch to AutotoolsPackage class from Package class

Switched in order to add support for the ppc64le platform.
 2017-03-04 07:53:50 -06:00
Jon Rood
0c1441c3e3 Using fPIC in PERL when using an Intel compiler. (#3355) 2017-03-04 07:50:38 -06:00
Adam J. Stewart
d52ac82f95 Convert gl2ps to CMakePackage (#3360) 
* Convert gl2ps to CMakePackage

* Remove unused spec variable
 2017-03-04 07:49:57 -06:00
Erik Schnetter
3e4fced7d8 ncurses: Work around an awk bug (#3361) 2017-03-04 07:49:12 -06:00
healther
1e6871add1 correct ipython dependency (#3332) 
* correct ipython dependency

* needed to introduce a github download for py-jedi

* corrected dependencies

* restrict appnope dependency to darwin>10.8

* flake8 fix
 2017-03-04 07:45:07 -06:00
healther
16c08fb5b3 add package py-junit-xml (#3336) 
* add package py-junit-xml

* Update package.py

* flake8 fix
 2017-03-04 07:44:36 -06:00
eklee15
c4e7cfe02b Added magma package (#3273) 
* Added magma package

* Incorporated Serban's change

* Removed cmake dependency
 2017-03-03 21:37:29 -06:00
healther
f34cd4be2b add package py-neo and py-quantities (#3337) 
* add package py-neo and py-quantities

* Update package.py

* fixed errors
 2017-03-03 21:34:20 -06:00
healther
ec81643906 add package py-pyminifier (#3340) 2017-03-03 21:34:04 -06:00
healther
b6ebfdaa60 add package py-serial (#3341) 
* add package py-serial

* fixed setuptools dependency
 2017-03-03 21:33:48 -06:00
healther
16e77086e0 add package py-pyfftw (#3342) 
* add package py-pyfftw

* Update package.py
 2017-03-03 21:33:31 -06:00
Adam J. Stewart
e7b019bf48 Revert "Make libgcc_s relocatable on Macos by adding @rpath to installname" (#3349) 2017-03-03 21:32:44 -06:00
Denis Davydov
003e841016 openblas: fix flags (#3344) 2017-03-03 19:30:35 -06:00
Andrew Holler
1cf8dbd200 features/highwayhash (#3242) 
* Adding highwayhash package from Google

* Added the highwayhash package for Tensorflow

* Fixed the numerous flake8 issues

* fixed requested changes

* added conditionals for some installs

* forgot an import

* create install directories before you install anything in them
 2017-03-03 19:00:43 -06:00
healther
8333c56ab8 add versions to package py-pandas (#3338) 2017-03-03 16:35:04 -06:00
Adam J. Stewart
678603f3cc scipy build fails when built in parallel (#3275) 2017-03-03 16:31:03 -06:00
Erik Schnetter
37eb59622d opencoarrays: Correct download url, update version (#3322) 2017-03-03 16:29:56 -06:00
健美猫
9ec148e484 Add package sga. (#3330) 2017-03-03 16:28:34 -06:00
healther
dfbe3278c4 add package py-lmfit (#3333) 
* add package py-lmfit

* needed to deactivate testing in openblas due to spec.cppflags being undefined

* undid openblas modification
 2017-03-03 16:27:32 -06:00
healther
7dff5e7646 add package py-myhdl (#3335) 
* add package py-myhdl

* Update package.py
 2017-03-03 16:27:14 -06:00
健美猫
d63a53e691 Fix simul by diabling inline and replacing mpicc command. (#3323) 2017-03-03 10:19:17 -06:00
healther
191bf1e132 add package py-elephant (#3302) 
* add package py-elephant

* add variants for docs and pandas
 2017-03-03 08:39:06 -06:00
healther
ba21940409 add resource manpages to package git (#3299) 
* add resource manpages to package git

* Update package.py

* added manpages per version

* added explaining comment

* fixed synatx error
 2017-03-03 08:07:50 -06:00
healther
def42f156d add flex variant to cscope (#3252) 
* add flex variant to cscope

* fixed dependency

* fixed typo
 2017-03-03 08:06:25 -06:00
健美猫
9df2649d02 Add package mdtest. (#3303) 2017-03-03 08:05:16 -06:00
健美猫
f443490f34 Add package sctk. (#3325) 2017-03-03 08:04:01 -06:00
健美猫
e4a0d8a78e Add packag gradle. (#3326) 2017-03-03 08:02:32 -06:00
healther
bb997d2de5 add package py-spyder (#3312) 
* add package py-spyder

* fixed dependencies

* py-flake8 -> py-pycodestyle

* fixed packagename

* Update package.py

* Update package.py
 2017-03-03 08:01:20 -06:00
healther
818118c589 add package py-qtawesome (#3308) 
* add package py-qtawesome

requires py-qtpy

* fixed url

* remove unnecessary comment
 2017-03-03 08:00:21 -06:00
healther
2d395d7d75 add package py-qtpy (#3307) 
* add package py-qtpy

* (re)added qt dependence

* changed url
 2017-03-03 08:00:01 -06:00
healther
ac0fa0ca6e add package py-numpydoc (#3311) 
* add package py-numpydoc

* removed unnecessary dependency

* added dependency
 2017-03-03 07:59:28 -06:00
健美猫
7511c9cd1a Add a new version for bamtools 2.4.1. (#3328) 2017-03-03 07:58:41 -06:00
healther
15c311fbeb add package notmuch and dependencies (#3329) 
* add package notmuch and dependencies

depends on
* gmime

* flake8 again
 2017-03-03 07:57:47 -06:00
healther
4494233c93 add package gmime (#3327) 
* add package gmime

* flake8 fix..
 2017-03-03 07:57:15 -06:00
Adam J. Stewart
7fcd414050 Fixes to allow Boost to build with Python 3 (#3293) 
* Fixes to allow Boost to build with Python 3

* Restrict patch to Python 3 only
 2017-03-02 18:36:10 -06:00
Adam J. Stewart
bde0a67415 Add new package for PaGMO/PyGMO (#3210) 
* Add new package for PaGMO/PyGMO

* Rename py-pygmo to pagmo

* Fix concretization bug

* Correct Python detection, use correct flags

* Install PyGMO to the pagmo prefix, not the Python prefix
 2017-03-02 18:35:19 -06:00
Federico Padua
ecca9abc72 Ior package: fix build issues (#3276) 
This commits address build issues reported in issue #3268.
In particular, makes cleaner the dependency on parallel-netcdf
when +ncmpi variant is requested and adds CFLAGS=-D H5_USE_16_API
to handle the fact that Ior uses old 1.6 style APIs when +hdf5 is
requested.
These changes make Ior build fine and create modules for HDF5 versions
1.8.x and 1.10.0.
Even though build is successfull the modules haven't been tested in a
run.
 2017-03-02 18:33:36 -06:00
Adam J. Stewart
a7be0d4e5d Convert icu4c to AutotoolsPackage (#3316) 2017-03-02 18:32:04 -06:00
Patrick Gartung
4afb7a729c Make libgcc_s relocatable on Macos by adding @rpath to installname (#1671) 
* Make libgcc_s relocatable

* spack specifies full path to lib64

* don't need trailing /

* setting rpath is different on macos

* add -headerpad_max_install_names linker options

* formatting fixes

* Add Adam's recommendation
 2017-03-02 16:39:05 -06:00
healther
7baefa83b9 add package py-jedi (#3313) 2017-03-02 16:29:01 -06:00
healther
c67b8173e3 add package py-rope (#3314) 2017-03-02 16:28:42 -06:00
healther
a562d684b7 add various variants to vim (#3255) 
* add various variants to vim

* default to --enable-fail-if-missing

* vim package: -{python,ruby,lua,perl} sets build option to `no`

* vim's interpreter build options are `--enable-XXXXinterp={yes,no,dynamic}`
* dynamic seems to work only on windows builds
* `=no` is the default => use it in spack if the variant is disabled
 2017-03-02 14:26:52 -06:00
healther
d0835289e8 add package py-chardet (#3310) 2017-03-02 13:50:21 -06:00
healther
73836fccd2 add package py-boltons (#3279) 
* add package py-boltons

* added description

* fixed non-utf8 characters
 2017-03-02 12:51:00 -06:00
Michael Kuhn
6d0fbe7d96 Update adios to 1.11.1 (#3221) 
Add a zfp variant and a patch that resets the interpreter for gpp.py.
 2017-03-02 12:44:43 -06:00
healther
acb72c7037 add package py-brian (#3280) 
* add package py-brian

* fixed typo

* removed unnecessary dependency

* fixed typo2
 2017-03-02 12:44:09 -06:00
healther
c610c197ba Feature/py doxypy (#3283) 
* add package py-doxypy

* fixed template and url
 2017-03-02 12:44:01 -06:00
healther
9607c55eac add package py-doxypypy (#3284) 2017-03-02 12:43:43 -06:00
healther
98baff0167 add package py-fasteners (#3285) 
* add package py-fasteners

* fixed dependencies
 2017-03-02 12:43:34 -06:00
healther
a8c57d65c1 add package py-flexx (#3288) 2017-03-02 12:43:24 -06:00
healther
2f0c3d81aa add version 2.0.0 for py-matplotlib (#3289) 2017-03-02 12:43:13 -06:00
healther
0c014bf36c add package py-lazyarray (#3290) 
* add package py-lazyarray

* added numpy dependency

* flake8 fixes
 2017-03-02 12:43:02 -06:00
healther
7bcc12a3c1 add package py-lazy (#3291) 2017-03-02 12:42:33 -06:00
健美猫
0c1ccd5180 Add simul. (#3300) 2017-03-02 12:42:15 -06:00
Brian Van Essen
5bb22c3024 Added a recipe for the Caffe deep learning toolkit. (#3232) 
* Added a recipe for the Caffe deep learning toolkit.

* Added code to extend python and fixed flake8 error.

* Fixed Flake8 error
 2017-03-02 12:30:00 -06:00
Massimiliano Culpo
ed582cef68 New interface for passing build information among specs (#1875) 
- Added a new interface for Specs to pass build information
  - Calls forwarded from Spec to Package are now explicit
  - Added descriptor within Spec to manage forwarding
  - Added state in Spec to maintain query information
  - Modified a few packages (the one involved in spack install pexsi) to showcase changes

- This uses an object wrapper to `spec` to implement the `libs` sub-calls.
  - wrapper is returned from `__getitem__` only if spec is concrete
  - allows packagers to access build information easily
 2017-03-02 10:01:29 -08:00
Denis Davydov
88f97c07de fix build of 64bit PETSc and Trilinos in the same deal.II DAG (#3223) 
Declare that (i) Trilinos can be only built against 32bit Hypre
(ii) SLEPc can not be built with Arpack when 64bit indices are used
(iii) reflect those constraints in deal.II's depends_on
While there, add extra release flags for best performance.
 2017-03-02 08:16:58 -06:00
Jon Rood
8f915de610 Updating SAMRAI package with new urls and new versions (#3188) 
* Updating SAMRAI package file with new urls and new versions. Also using Spack's MPI compilers.

* Using default optimization for Samrai and setting type to build for m4 dependency.

* Adding debug variant to Samrai.

* Converting Samrai to AutotoolsPackage.
 2017-03-02 06:52:53 -06:00
healther
ffce6e1c4e add variant shared to yaml-cpp (#3254) 2017-03-01 16:36:46 -06:00
healther
20360f6727 add package py-current (#3282) 2017-03-01 15:34:04 -06:00
eklee15
8b52a87285 Add xl and spectrum mpi support for mumps (#3231) 
* Add xl and spectrum mpi support for mumps

* Incorporated Denis's comments. fPIC and if-else
 2017-03-01 15:33:41 -06:00
eklee15
4e601bb6d3 Exclude a few packages to build with xl (#3270) 2017-03-01 14:46:58 -06:00
healther
fa294a25db add version 2.2.0 to package bear (#3278) 2017-03-01 13:37:47 -06:00
healther
1ee470c37e Add package: git-review (#3088) 
* Add git-review

* Fix flake8 errors

* use PythonPackage for git-review

* added dependencies for git-review

* fix flake8

* moved url's to pypi.io based urls

* fixed flake8... again

* mostly url fixes, not tested, will do tomorrow

* flake8 fix

* changed URL for py-pysocks

* Fixed URL for pysocks

* fixed url
 2017-03-01 12:29:22 -06:00
healther
5fe96dec27 add packages vcsh (#3256) 
* add packages vcsh

* added git dependency

* added comment regarding makefile
 2017-03-01 07:51:36 -06:00
healther
6a1a2d5ec1 add package units (#3257) 
* add package units

* removed unnecessary dependency

* readded python dependency
 2017-03-01 07:51:17 -06:00
healther
2fb179f55b add package py-xmlrunner and fix unittest2 dependency (#3260) 
* add package py-xmlrunner and fix unittest2 dependency

* add setuptools dependency
 2017-03-01 07:51:05 -06:00
healther
d5884bdb78 add package py-symfit (#3264) 
* add package py-symfit

* added missing dependency

* fixed ordering of versions
 2017-03-01 07:50:54 -06:00
healther
4e433f8a03 add package py-statsmodels and py-patsy (#3265) 
* add package py-statsmodels and py-patsy

* fixed typo

* fixed urls

* removed rc version
 2017-03-01 07:50:28 -06:00
Adam J. Stewart
186d990791 pip requires setuptools during runtime (#3272) 2017-03-01 07:49:57 -06:00
Gregory Lee
ecc8f578af added urls for Intel Parallel Studio (#3220) 2017-02-28 14:57:10 -06:00
healther
37c36cf04e add package py-tqdm (#3262) 
* add package py-tqdm

* added py-setuptools dependency
 2017-02-28 13:36:32 -06:00
eklee15
bce2accb69 xl support for suite-sparse (#3226) 
* xl support for suite-sparse

* make_args.extend([
    'CFLAGS={0}'.format(self.compiler.pic_flag),
    'FFLAGS={0}'.format(self.compiler.pic_flag)
])
 2017-02-28 11:26:49 -08:00
eklee15
9be0c06b98 Patch hypre to support ppc64le (#3238) 
- Patch applies through v2.11.1
 2017-02-28 11:24:43 -08:00
healther
c32a9416ec add package py-tabulate (#3263) 
* add package py-tabulate
* added py-setuptools dependency
 2017-02-28 11:20:46 -08:00
Jean-Paul Pelteret
86276cd734 Update Adol-C to AutotoolsPackage; Change develop repository (#3246) 
The new repository for the development version points to the most
up-to-date official source for Adol-C. The previous SVN repository was
only occasionally sync'd with this repository.
 2017-02-28 13:18:40 -06:00
Thierry
315dfe0970 nfft distclean before configure patch (#3241) 2017-02-28 13:05:01 -06:00
healther
d1040b7111 add package py-sh (#3266) 
* add package py-sh

* removed constraint on py-setuptools
 2017-02-28 12:59:43 -06:00
Adam J. Stewart
c1382f9d02 Fix infinite recursion in swig build (#3249) 2017-02-28 12:58:08 -06:00
Bryce Allen
b2784f3664 add sz package (#3251) 2017-02-28 12:57:16 -06:00
healther
dee2259f3a add package py-saga-python and dependencies (#3267) 
* add package py-saga-python and dependencies

* fixed url and dependencies
 2017-02-28 12:56:36 -06:00
healther
70d0cdcd0a add package py-attrs (#3253) 2017-02-28 10:51:31 -06:00
healther
be0033ac91 add py-ranger package (#3258) 2017-02-28 10:21:06 -06:00
healther
25f10cca48 add package py-xarray (#3259) 2017-02-28 10:17:43 -06:00
healther
a43f2a49cb add version 0.29.0 to py-wheel (#3261) 2017-02-28 10:12:51 -06:00
Denis Davydov
b5b1e58843 numdiff: add 5.9.0 (#3243) 2017-02-26 08:17:17 -06:00
Eric Müller
ef55b01906 Add py-mock version 2.0.0 (#3234) 2017-02-24 08:05:49 -06:00
Eric Müller
06f366c53f Add bazel version 0.4.4 (#3233) 2017-02-24 08:05:21 -06:00
Javier
9650afd97e Fixing graphviz issue when calling spec (#3225) 2017-02-23 07:56:39 -06:00
Denis Davydov
60b7e13e1a fix py-setuptools (#3217) 2017-02-22 15:15:23 -08:00
Pramod Kumbhar
c9f705ffc2 Add SCOREC Core package for unstructured mesh simulations. (#3202) 
* Add SCOREC Core package for unstructured mesh simulations.
 2017-02-22 14:03:11 -08:00
Pramod Kumbhar
f86dcd8b4c Fix scotch build on bg-q (#3196) 
* Fix build issue #3190 on bg-q :
 - disable parallel build as it produces weired linker errors
   in cross compiling environment
 - update ldflags for bg-q as per Makefile provided Makefile.inc.ppca2_ibm_bgq
* Added note about -lpthread vs -pthread
 2017-02-22 11:04:14 -08:00
Kim Serradell
871a94ee41 Updating homepages and sources from two BSC packages (#3216) 
* Corrected extrae package homepage and url
* Corrected paraver package homepage and url
* To fix 'undefined reference to libintl_dgettext' appearing in extrae package when using binutils+libiberty
* Adding support to previous paraver version and reverting binutils changes to open another PR
 2017-02-22 11:03:25 -08:00
Todd Gamblin
539a454900 Convert Jaspert to AutotoolsPackage (#3212) 2017-02-22 09:29:34 -08:00
eklee15
52fab8fff3 Boost modification for IBM xl compiler (#3205) 
Tested with:
spack install boost@1.62.0+iostreams%xl_r^zlib%gcc^bzip2%gcc
 2017-02-21 16:40:09 -08:00
healther
177c54ecbf Add packages: mosh (#3098) 
* Add packages: mosh

Perl is a run dependency. See https://github.com/mobile-shell/mosh/wiki/Build-Instructions
 2017-02-21 09:50:06 -08:00
Javier
3195264546 Fix malformed py-appdirs patch (#3203) 2017-02-21 07:51:19 -06:00
healther
7827a0ff67 Default to OpenSSL 1.0 (#3100) 
* Added version 1.1 to openssl
* restore note explaining preferred=True for 1.0.2k
 2017-02-20 18:21:27 -08:00
Carlos Bederián
6681fc1a47 parallel-netcdf: use spack_cc for sequential code instead of system gcc (#3143) 2017-02-20 18:19:45 -08:00
Adam J. Stewart
d2a52d6dd6 Fix setuptools bootstrapping now that dependencies are no longer vendored (#3198) 
* Fix setuptools bootstrapping now that dependencies are no longer vendored
* Reorder patch and comments
* Use exact same patch as https://github.com/ActiveState/appdirs/pull/84
* Use exact same patch as https://sourceforge.net/p/pyparsing/patches/10/
 2017-02-20 18:09:03 -08:00
Javier
fbbcf456e9 Updating package: geant4 (#3197) 2017-02-20 17:33:32 -08:00
Adam J. Stewart
5b6d2754d9 Add MATLAB package (#2614) 
* Add MATLAB package
* Remove auto-accept license feature
 2017-02-20 16:10:06 -08:00
Barry Smith
ab2d6285c4 Add installer for petsc4py and slepc4py (#3187) 
* Add installer for petsc4py and slepc4py
* @adamjstewart requested changes on this pull request; make these type=('build', 'run')
* @citibeth suggestion  Remove unneeded indirect dependencies
 2017-02-20 15:43:33 -08:00
Adam J. Stewart
0203545eb8 Update CUDA docstring, no longer need to download manually (#3191) 
* Update CUDA docstring, no longer need to download manually
 2017-02-20 15:41:31 -08:00
Denis Davydov
031cde6e25 openblas: add develop version to make it work with Kabylake CPUs (#3192) 
* openblas: add develop version to make it work with Kabylake CPUs
* dealii: fix develop branch
 2017-02-20 15:40:46 -08:00
Pramod Kumbhar
8c2f5baa19 Fix zoltan installation issue on bg-q #3193 (#3194) 
Zoltan expects mpi libraries with option --with-mpi-libs.
If this option is not provided then it uses '-lmpi' which
may not be correct. To avoid this, we have to explicitly
pass empty string.

This adds notes to the source explaining the change.
 2017-02-20 15:39:51 -08:00
Adam J. Stewart
4de85ab4b7 Add new versions of several Python packages (#3195) 2017-02-20 15:38:30 -08:00
healther
8ebd49c962 add symlink variant (needed for AFS) (#3147) 
* add symlink variant (needed for AFS)

* fix flake8

* added missing return statement
 2017-02-20 17:14:44 -06:00
healther
c8cfe317c2 Added version 1.49.2 to gobject-introspection (#3090) 2017-02-20 07:53:33 -06:00
Carlos Bederián
4b9a37a357 silo: adding patch to support newer versions of hdf5 (#3162) 2017-02-19 17:45:19 -08:00
Barry Smith
7edea4361f Add installer for SAWs (#3186) 2017-02-19 17:44:16 -08:00
健美猫
a211795a0c Add Intel Parallel Studio XE 2016u4 and 2015u6. (#3182) 2017-02-18 19:12:05 -08:00
Adam J. Stewart
49d7f9db3d Add patches to allow PGI to build Tar properly (#3177) 2017-02-18 19:09:50 -08:00
Adam J. Stewart
4397ce8118 Replace GCC-specific warning flags with valid PGI flags (#3137) 2017-02-18 16:42:45 -06:00
Adam J. Stewart
341b78a96d Add patch to allow M4 make check to pass for PGI (#3108) 2017-02-18 16:42:13 -06:00
Denis Davydov
7f89bc1e1d octave: fix missing --without statements (#3178) 2017-02-18 16:13:00 -06:00
healther
1a5b3e184f Add package: log4cxx (#3097) 
* Add log4cxx package

* add missing patch files to log4cxx

* remove unnecessary dependencies

* this fails at 'make check'

* this is the AutotoolsPackage version

* fixed install bug
 2017-02-18 16:10:15 -06:00
healther
63a0ca729d Added 2017 Intel libraries (#3084) 2017-02-18 16:02:33 -06:00