* add a shared variant for all supported versions
* address comment from @citibeth about MacOS lib installs
* address additional comments from @citibeth about MacOS lib installs
* set +shared variant to be default behavior
* add package py-cartopy
Change-Id: Ifbe541e852921c384a381594a2c1110814556311
* fix comments and flake8
Change-Id: I8d5e994580e8252e00654e68ad79d74e06089939
* remove pip dependency... not sure why added in the first place
Change-Id: Ie2a788887dac30778cc43931a0732980a347514d
* move build, link, run to default dependencies
Change-Id: I1ec0cb7dc4a697c4ca9e68a0cc0d8694cc21c100
Provides a patch for the fix in
https://github.com/ornladios/ADIOS/pull/182
Installed ADIOS MPI-enabled libraries are with that able to also
perform serial I/O without the need to start the whole app via
`mpiexec`.
* trilinos: add more package conflicts
This was done by putting in required lib dependencies from each
package's `cmake/Dependencies.cmake`.
* trilinos: added few more trilinos packages
* trilinos: hiccup fix
* add 1.4.13.4 for SZ
* undo spack link (change llnl/spack to spack/spack) and change .zip to .tar.gz
* revise package.py for SZ 1.4.13.4 based on Adam's comments.
* adding partially completed recipe for phast. will need clapack as dependency
* try to install phast
* seems to still need CLAPCK
* using CLAPACK instead
* phast: updated
* fixed flake8 error
* phast cannot build with clapack built with external blas?
* phast: depend on clapack built without external blas
* fixed flake8 errors
* phast: updated build_directory
* pybind11: test support
Add a test functionality to pybind11.
* CMake: test also on "make check"
Some projects use non-CTest manual targets for tests.
* Fix digest for abyss@1.5.2
The digest value for v1.5.2 appears to have changed. This value works
for me, today.
The existing value v2.0.2 works as is.
* Use "download" URL for ABYSS
Following the suggestion of the project team, switch to using the
release tarballs from the "download" URL instead of the automagically
generated ones at the "archive" URL.
Converstation here: https://github.com/bcgsc/abyss/issues/232
The URL that we were using for pigz only provides the current
version. When the author released v2.4 the package became
uninstallable (unless you have the tarball cached).
It turns out that their are tarballs of the tagged source tree
available on GitHub and they're sufficient to build things (no
additional bits needed).
This commit switches the URL to the GitHub archive URL.
Sadly, this changes the v2.3.4 digest, but that version was no longer
available/install-able anyway, so "net-net we're still in positive
territory".
Installing the current version of Picard fails with:
```
==> Error: Unable to parse extension from https://github.com/broadinstitute/picard/releases/download/2.18.3/picard.jar.
If this URL is for a tarball but does not include the file extension
in the name, you can explicitly declare it with the following syntax:
version('1.2.3', 'hash', extension='tar.gz')
If this URL is for a download like a .jar or .whl that does not need
to be expanded, or an uncompressed installation script, you can tell
Spack not to expand it with the following syntax:
version('1.2.3', 'hash', expand=False)
```
Fix it, but adding `expand=False`, like the other versions.
* fix missing -lrt for Centos6, issue: #7552
* fix missing -lrt for Centos6, issue: #7552
* fix using make() as opposed to patching
* remove patch, as the fix is provided withing package.py instead
* make flake8 happy
