Commit graph

13656 commits

Author SHA1 Message Date
Harmen Stoppels
b0baf42988
Fix hipcc once more (#20095) 2020-12-02 15:58:58 +01:00
Toyohisa Kameyama
e575a38d96
py-tensorlow: use mkdtemp for temporary directory. (#20212) 2020-12-02 08:45:30 -06:00
Ghorban M. Tavakoly
954a3aab62
gdbm: fix link errors with aocc (#20206) 2020-12-02 13:53:29 +01:00
ketsubouchi
d9ccce9689
py-numpy: add fj Fortran library options (#20210) 2020-12-02 13:45:03 +01:00
Massimiliano Culpo
44c1beaf3a
boost: disable find_package's config mode for boost prior to v1.70.0 (#20198) 2020-12-02 12:25:57 +01:00
ketsubouchi
47ac7da244
openexr: changed build system to autotools (#20209) 2020-12-02 11:10:47 +01:00
Nichols A. Romero
0d988700ba
QMCPACK: added v3.10.0 and updates to package recipe (#20199)
* cuda_arch value must be explictly set.

* QMCPACK LaTeX manual now converted to reStructuredText and directory no longer exists.
2020-12-02 11:07:46 +01:00
Nithin Senthil Kumar
a3005d4a7c
mvapich2: added v2.3.5 (#20211)
Co-authored-by: nithintsk <nithintsk@github.com>
2020-12-02 11:01:49 +01:00
AMD Toolchain Support
721fdddde4
namd, charmpp: patch to allow build with AMD Toolchain support (#20083)
Co-authored-by: mohan babu <mohbabul@amd.com>
2020-12-02 09:46:54 +01:00
Jieyang Chen
c0bbf5454c
Add smoke test to VTK-m package (#19816)
* add smoke test

* remove whitespaces

* fix minimum version issue

* reorder decorators & replace make with cmake build

* merge cmake build into one line

* reorganize smoke test function

Co-authored-by: Jieyang Chen <chenj3@ornl.gov>
2020-12-01 17:59:44 -06:00
MichaelLaufer
59106c4dec
Fixes compile time errors (#20006)
Co-authored-by: michael laufer <michael.laufer@toganetworks.com>
2020-12-01 16:21:19 -06:00
Seth R. Johnson
42ed6e25e1
pugixml: add 1.11 and update variants (#20175) 2020-12-01 14:26:08 -05:00
Tom Payerle
5d248a3c67
New package: py-qsymm (#19455)
* New package: py-qsymm

* py-qsymm: Convert to using tarballs from PyPi instead of git checkouts

* py-qsymm: add missing dependencies

* Update var/spack/repos/builtin/packages/py-qsymm/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-qsymm: Fix url to use pypi hidden download interface

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-12-01 13:25:12 -06:00
Harmen Stoppels
32e23f5324
mpich: fix autotools deps for mpich 3.3.x (#20176)
Issue is fixed in 3.4.x
2020-12-01 18:46:32 +01:00
Justin S
b43202f433
mummer4: add 4.0.0rc1 (#20183) 2020-12-01 17:42:15 +01:00
AMD Toolchain Support
ec1eddb6e7
AOCC-2.3.0 is now added to spack (#20089)
* AOCC-2.3.0 is now added to spack

Change-Id: I18fd9606e6fd9a288cc7dc6c6ead11ea17839a7c

* Added flag and version tests for AOCC-2.3.0

* Addressed review comments

Co-authored-by: vkallesh <Vijay-teekinavar.Kallesh@amd.com>
2020-12-01 08:07:58 -06:00
fcannini
2530d53ac6
quantum-espresso: Enables build with Environ library. (#20131) 2020-12-01 10:44:19 +01:00
Massimiliano Culpo
e2033566bf
concretizer: remove ad-hoc rule for external packages (#20193)
fixes #20040

Matching compilers among nodes has been prioritized
in #20020. Selection of default variants has been
tuned in #20182. With this setup there is no need
to have an ad-hoc rule for external packages. On
the contrary it should be removed to prefer having
default variant values over more external nodes in
the DAG.
2020-12-01 10:11:40 +01:00
Massimiliano Culpo
7fd777c3d9
concretizer: swap priority of selecting provider and default variant (#20182)
refers #20040

Before this PR optimization rules would have selected default
providers at a higher priority than default variants. Here we
swap this priority and we consider variants that are forced by
any means (root spec or spec in depends_on clause) the same as
if they were with a default value.

This prevents the solver from avoiding expected configurations
just because they contain directives like:

depends_on('pkg+foo')

and `+foo` is not the default variant value for pkg.
2020-12-01 07:45:48 +01:00
Justin S
8edc831e43
r-v8: new package at 3.4.0 (#20056)
* r-v8: new package at 3.4.0

* r-v8: remove duplicate line
2020-11-30 18:10:03 -06:00
Axel Huebl
535acdcdb1
OpenBLAS: More Precise GCC Conflicts (#20101)
* OpenBLAS: More Precise GCC Conflicts

Add more precise GCC conflicts so e.g. GCC 6 and GCC 7.5 don't fail.

* Compact syntax

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-30 18:09:37 -06:00
Chuck Atkins
7d79db2de7
Fix Mesa GLES conflicts (#20184) 2020-11-30 23:54:24 +01:00
Adam J. Stewart
868dbb24c1
libQGLViewer: add new package (#20164) 2020-11-30 10:25:40 -05:00
manifest
2072c93dc8
Added bedtools2 v2.29.2 and and py-bedtools versions up to v0.8.0 (#19744) 2020-11-30 15:55:49 +01:00
Adam J. Stewart
2a7a6d472b
CMake should be a build dependency (#20160) 2020-11-30 14:55:44 +01:00
Toyohisa Kameyama
87adda1bad
bowtie2: change to MakefilePackage and add simde dependency. (#20166) 2020-11-30 14:19:47 +01:00
Harmen Stoppels
8c8e9b71a7
New versions of reframe, singularity and slurm (#20119)
Adds new versions of reframe (3.2, 3.3), singularity (3.7.0) and slurm (20-11-0-1).

Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2020-11-30 14:01:19 +01:00
Chuck Atkins
80624213f4
llvm: conflict for CMake breaking change when treating ASM files as C (#20105) 2020-11-30 13:47:00 +01:00
Kai Torben Ohlhus
e1a35540ee
intel-mkl: added v2020.4.304 (#20167)
2020 Update 4, Build date: 21 Oct 2020.
2020-11-30 13:38:59 +01:00
Tim Moon
f139fff796
Hydrogen: disabling CPU half support also disables GPU half support (#20077)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2020-11-30 11:44:37 +01:00
Andrew W Elble
499ada708e
kicad: new package (#20074) 2020-11-30 10:43:45 +01:00
h-denpo
7b587bdda3
ffb: Fixed a recipe error when using the Intel compiler. (#20133) 2020-11-30 09:04:14 +01:00
h-denpo
4e3fd2687a
r-rpostgresql: update config.guess reusing logic from autotools (#18917) 2020-11-30 08:58:14 +01:00
fcannini
447ba23fac
dalton: New package. (#20130) 2020-11-30 08:57:26 +01:00
Andrew W Elble
8130ac3acb
gnuradio: add gui support (#20073) 2020-11-30 08:54:55 +01:00
Tom Payerle
1c2424ac29
New package: povray (#20071) 2020-11-30 08:54:05 +01:00
Dave Love
c15755e88d
memkind: Add versions :1.10.1 (#20122) 2020-11-30 08:47:45 +01:00
Toyohisa Kameyama
0d25a48a13
py-pyscf: add version 1.7.5. (#20135) 2020-11-30 08:46:38 +01:00
Kai Torben Ohlhus
52986f3b0c
octave: add version 6.1.0 (#20168) 2020-11-30 08:38:32 +01:00
Adam J. Stewart
aca8508056
Add libs properties to a few packages (#20163) 2020-11-30 08:34:13 +01:00
Adam J. Stewart
a2d156902b
freeglut: prevent linking to system deps (#20161) 2020-11-30 08:31:56 +01:00
Angel de Vicente
08c9a6e2b0
Qt: fix GCC (#19948)
tested only for gcc8.3.0 but should be safe for other compilers
2020-11-29 17:45:41 -05:00
Michael Kuhn
cc53ff162f
go: added v1.15.5 and v1.14.12 (#20142) 2020-11-29 20:08:31 +01:00
Geoffrey Oxberry
073e7569db
mfem: apply patches from #19452 when mfem@4.1: (#20151)
As part of pull request #19452, a patch method was added to the mfem
package to delete byte order marks from 3 mfem source files. These
files first appeared in a stable release of mfem as of version
4.1. Consequently, attempts to install mfem 3.4 or mfem 4.0 fail
because no files exist at the path arguments of the filter_file
commands used to execute this operation. Decorating the patch method
so it runs only on mfem versions 4.1 and later resolves the errors
that were thrown due to files not found.

This commit adds that decorator.
2020-11-29 20:04:16 +01:00
Michael Kuhn
b96a251c3d
librsvg: added v2.50.2 (#20150) 2020-11-29 20:02:44 +01:00
Michael Kuhn
117000f607
node-js: added v15.3.0 and v14.15.1 (#20145) 2020-11-29 20:02:15 +01:00
Michael Kuhn
c473741bea
npm: added v6.14.9 (#20146) 2020-11-29 20:01:13 +01:00
Michael Kuhn
1fc687e9f6
rust: Add 1.48.0 (#20149) 2020-11-29 11:39:11 -06:00
vvolkl
bd6b83c81e
[catch2] add versions and fix github branch (#20157) 2020-11-29 14:44:34 +01:00
Chuck Atkins
ada781cc8f
mesa: Require at least one front-end and back-end to be selected (#20144) 2020-11-29 14:37:45 +01:00
Seth R. Johnson
58babe81e1
Qt: add options to disable docs and gui (#20078)
* Qt: add options to disable docs and gui

- Add `~gui` option for minimal build
- Add `+doc` option to install docs, and attempt to disable the implicit
  llvm dependency if not
- Removes the 'freetype' option which hasn't worked reliably in qt5, as
  many of the gui components implicitly rely on freetype.
- Add and test version 5.15 (and skip qtlocation if disabling opengl)
- Refactor some of the dependency logic

I've tested this on linux with 5.15.2 and 4.8.7 in a couple of different
configurations.

* Address reviewer feedback and correctly disable llvm

* Fix qt doc generation
2020-11-29 02:10:25 +01:00
vvolkl
795611b652
Set default to range-v3~doc (#20153)
This is a more sensible default, I think, as it avoids the doxygen dependency.
2020-11-28 22:17:48 +01:00
Adam J. Stewart
7c26a10de8
py-rosinstall: add new package (#20110) 2020-11-28 11:01:33 -06:00
Adam J. Stewart
6f3bb73dd3
py-rosinstall-generator: add new package (#20109) 2020-11-28 11:01:18 -06:00
Adam J. Stewart
9daed27dc0
py-rosdep: add new package (#20107)
* py-rosdep: add new package

* setuptools needed at run-time

Co-authored-by: Andrew W Elble <aweits@rit.edu>

Co-authored-by: Andrew W Elble <aweits@rit.edu>
2020-11-28 11:01:05 -06:00
Adam J. Stewart
98460b6f47
py-rosdistro: add new package (#20108) 2020-11-27 20:37:15 -06:00
Adam J. Stewart
d49912a8a1
py-rospkg: add new package (#20111)
* py-rospkg: add new package

* setuptools needed at run-time

Co-authored-by: Andrew W Elble <aweits@rit.edu>

Co-authored-by: Andrew W Elble <aweits@rit.edu>
2020-11-27 17:01:36 -06:00
Adam J. Stewart
e2669eddb9
py-catkin-pkg: add new package (#20106)
* py-catkin-pkg: add new package

* setuptools is needed at run-time

Co-authored-by: Andrew W Elble <aweits@rit.edu>

Co-authored-by: Andrew W Elble <aweits@rit.edu>
2020-11-27 14:43:43 -06:00
Adam J. Stewart
77aca8153d
py-wstool: add new package (#20115) 2020-11-27 14:43:27 -06:00
Massimiliano Culpo
8dd3797d32
concretizer: treat target ranges in directives correctly (#19988)
fixes #19981

This commit adds support for target ranges in directives,
for instance:

conflicts('+foo', when='target=x86_64:,aarch64:')

If any target in a spec body is not a known target the
following clause will be emitted:

node_target_satisfies(Package, TargetConstraint)

when traversing the spec and a definition of
the clause will then be printed at the end similarly
to what is done for package and compiler versions.
2020-11-27 20:53:39 +01:00
Adam J. Stewart
e6641065af
py-vcstool: add new package (#20112) 2020-11-26 18:06:10 -06:00
Adam J. Stewart
d2a83b8318
py-vcstools: add new package (#20114) 2020-11-26 18:05:39 -06:00
AMD Toolchain Support
3252fb05fa
spack recipe for gromacs with aocc compiler support (#19745)
* spack recipe for gromacs with aocc compiler support

Change-Id: I364aab4a0aa2dcd44bc47eb50c81b2d94c99cfbd

* Removed arch and other associated compilers flags

Added cycle_subcounters variant

Co-authored-by: vkallesh <Vijay-teekinavar.Kallesh@amd.com>
2020-11-26 09:07:56 -06:00
Massimiliano Culpo
03ff89fee6
concretizer: prioritize matching compilers over newer versions (#20020)
fixes #20019

Before this modification having a newer version of a node came
at higher priority in the optimization than having matching
compilers. This could result in unexpected configurations for
packages with conflict directives on compilers of the type:

conflicts('%gcc@X.Y:', when='@:A.B')

where changing the compiler for just that node is preferred to
lower the node version to less than 'A.B'. Now the priority has
been switched so the solver will try to lower the version of the
nodes in question before changing their compiler.
2020-11-26 13:10:48 +01:00
Harmen Stoppels
adccaa7af5
Add cmake 3.19.1 (#20118) 2020-11-26 10:18:22 +01:00
Mark W. Krentel
7e2ce24060
llvm-amdgpu: fix the build for version 3.9.0 (#20029)
* llvm-amdgpu: fix the build for version 3.9.0

Adapt the fix-system-zlib-ncurses.patch for version 3.9.0.  Without
the patch, llvm-amdgpu builds, but then rocm-device-libs fails with
"cannot find -ltinfo."

Tighten the version requirements for cmake according to the
llvm/CMakeLists.txt file.

* Add a conflict for cmake 3.19.0.
2020-11-26 09:32:24 +01:00
Massimiliano Culpo
8991cc4632
concretizer: allow a bool to be passed as argument for tests dependencies (#20082)
refers #20079

Added docstrings to 'concretize' and 'concretized' to
document the format for tests.

Added tests for the activation of test dependencies.
2020-11-26 08:55:17 +01:00
Massimiliano Culpo
983fb11dee
concretizer: treat conditional providers correctly (#20086)
refers #20040

This modification emits rules like:

provides_virtual("netlib-lapack","blas") :- variant_value("netlib-lapack","external-blas","False").

for packages that provide virtual dependencies conditionally instead
of a fact that doesn't account for the condition.
2020-11-25 22:03:42 +01:00
Martin Aumüller
b33969598a
intel-tbb: patch for arm64 on macOS (#20039)
* intel-tbb: patch for arm64 on macOS

as submitted upstream and used in homebrew

* intel-tbb: check patchable versions

* intel-tbb: avoid patch breakage when 2021.1 is released

2021.1-beta05 would be considered newer than 2021.1
2020-11-25 10:05:50 -06:00
downloadico
8b2c7a6c65
Add the 'exciting' package. (#20060)
* Add the 'exciting' package.
Version 14 (latest available) is defined.
An as-of-yet unpublished patch (dfgather.patch) from the developers is also
included.

* fixed flake8 errors (I *thought* I had already gotten them!  OOPS!)

* Update var/spack/repos/builtin/packages/exciting/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fixed install method to just do the install, and no build method is needed.

* *Actually* added the lapack dependency!

* removed variant from blas dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-25 09:59:35 -06:00
Tomoyasu Nojiri
164fc4ee95
powertop: Add depend ncurses (#20080) 2020-11-25 10:15:51 +01:00
Erik Schnetter
408824f365
h5cpp: Correct checksum and build instructions (#20053)
* h5cpp: Correct checksum and build instructions

Closes https://github.com/spack/spack/issues/20046.

* h5cpp: Update to 1.10.4-6

* Update var/spack/repos/builtin/packages/h5cpp/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* h5cpp: Correct formatting

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-24 13:37:29 -06:00
Dr. Christian Tacke
f6549849e5
root: Add 6.22.02, remove preferred label (#20002)
Drop the preferred label from 6.20.x.
Let's just default to the latest (production) version.
2020-11-24 11:08:56 -06:00
Scott Wittenburg
348cbe143c
phist needs sbang fix for build script (#20063) 2020-11-24 07:07:34 -08:00
Ricardo Silva
87689f7cc8
sqlcipher: new package at v4.4.1 (#20009)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-11-24 15:54:27 +01:00
Ben Morgan
d9f6ef9df4
clhep: new version 2.4.4.0 (#20066) 2020-11-24 08:53:22 -06:00
Ben Morgan
2c0091df3f
vecgeom: new version 1.1.8 (#20067) 2020-11-24 08:32:33 -05:00
vvolkl
28a3b30c53
[root] fix rootfit/roofit variant (#20051)
* [root] fix rootfit/roofit variant

fix typo

* Update var/spack/repos/builtin/packages/root/package.py

Co-authored-by: Hadrien G. <knights_of_ni@gmx.com>

Co-authored-by: Hadrien G. <knights_of_ni@gmx.com>
2020-11-24 11:19:10 +00:00
vvolkl
4e35df4b61
[gaudi] clhep is not optional (#20052) 2020-11-24 11:17:28 +00:00
Justin S
c468d6bed2
r-stanheaders: add 2.21.0-6 (#20057) 2020-11-23 20:56:48 -06:00
Andrew W Elble
3f0984e5e1
py-tensorboard: force use of spack's python, force build of ijar (#20059)
(same fix for py-tensorboard-plugin-wit)
2020-11-23 20:56:33 -06:00
Martin Oberzalek
fd07decd27
Also build static library (#20016) 2020-11-23 20:46:14 -06:00
Dmitri Smirnov
aa8dd782cd
mysql: Add sasl as dependency for versions <5.7.999 (#20027) 2020-11-23 20:43:37 -06:00
Matthias Diener
617f2ac714
charmpp: fix tests (#20047) 2020-11-23 20:27:55 -06:00
Justin S
aee3b4a1e8
r-bh: add 1.72.0-3 (#20058) 2020-11-23 20:18:14 -06:00
Axel Huebl
01c9f3edc3
pybind11: 2.6.1 (#20061)
Add the latest pybind11 release.
Since release 2.6.0 was a major release with many changes in the
build system, prefer 2.5.0 for now.
2020-11-23 20:12:24 -06:00
Seth R. Johnson
5c623b03b1
flibcpp: update version and deps (#20048) 2020-11-23 10:40:57 -05:00
iulian787
cb4a08b3e0
moab: added v5.2.1, v5.2.0, v5.1.0 (#20010)
Also added maintainers for the package recipe.
2020-11-23 13:17:52 +01:00
vvolkl
fa66d683e4
delphes: updated pre-release version (#20011) 2020-11-23 13:16:14 +01:00
Martin Aumüller
b62401ec8f
ispc: external find support, added master branch version (#20033)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-11-23 12:28:11 +01:00
Cyrus Harrison
8a54817d4e
vtk-h: added v0.6.6 (#20026) 2020-11-23 11:21:42 +01:00
Martin Aumüller
5088d799eb
openscenegraph: remove dependency on Qt for >= 3.5.4 (#20032) 2020-11-23 11:18:41 +01:00
Michael Kuhn
c25f15b7d5
libx11: added v1.7.0 (#20035) 2020-11-23 11:13:33 +01:00
Michael Kuhn
d7db6068c5
libxcb, xcb-proto: added v1.14 versions (#20036)
At least xcb-proto 1.14.1 is only avaiable from the new URL, so change
both to be future-proof.
2020-11-23 11:13:09 +01:00
Martin Aumüller
236796577d
botan: added v2.17.0, v2.17.1 and v2.17.2 (#20037) 2020-11-23 11:11:51 +01:00
Pramod Kumbhar
92d540fde7
Add sionlib and linktest packages (#20034)
* Add sionlib and linktest packages

* fix flake8
2020-11-22 09:22:26 -06:00
Thomas Gruber
4609a126ba
Add new release 5.1.0 and change homepage (#20022) 2020-11-21 00:02:08 +01:00
Martin Oberzalek
439b329c38
openldap: enable creation of static libraries (#20013) 2020-11-20 13:51:25 +01:00
psakievich
f613e10f24
Trilinos: Add CUDA relocatable code flag (#19993)
* Add relocatable code flag to trilinos

* Make CUDA RDC and varainat

* adjust default of cuda_rdc
2020-11-19 19:24:42 -05:00
Josh Essman
f92e52cdc8
mfem: Add support for AmgX, fix to version extensions (#19990)
* fix: leading . is not needed in extension kwarg

* mfem: add support for NVIDIA AmgX

fix: proper spacing

* mfem: use conflict to indicate that AmgX is expected to depend on CUDA
2020-11-19 14:03:22 -06:00