Commit graph

14892 commits

Author SHA1 Message Date
ktsai7
9b3f5f3890
update flecsi and legion package.py (#15159)
* update flecsi and legion package.py

* comment out a conflict

* update to use extend
2020-02-24 13:22:25 -06:00
Michael Kuhn
45306206c7
docs: Fix tiny typo (#15181) 2020-02-24 10:58:21 -06:00
Michael Kuhn
94acd8f235
cmd/load: Fix usage output (#15180)
args.specs is a list, which results in output like this:
```
eval `spack load --sh ['libxml2', 'xz']`
```

We want this instead:
```
eval `spack load --sh libxml2 xz`
```
2020-02-24 09:46:41 -06:00
Michael Kuhn
a38eb70e30
modules: store configure args during build (#11084)
This change stores packages' configure arguments during build and makes
use of them while refreshing module files. This fixes problems such as in
#10716.
2020-02-24 15:34:57 +01:00
darmac
b1e097b035
add new package : agrep (#15165)
* add new package : agrep

* agrep: move binary to bin/
2020-02-24 08:00:34 -06:00
Anthony Scemama
48d6da3b6e
Added extra versions of OCaml (#15177)
* Aded extra versions for OCaml

* Added maintainer
2020-02-24 07:59:59 -06:00
Robert Underwood
79dcf835b2
sz: update to version 2.1.8.1 (#15154)
The newer versions of SZ now uses CMake to build.
2020-02-24 07:55:39 -06:00
Glenn Johnson
c2e1319f2d
Update py-bx-python package (#15175)
* Update py-bx-python package

- add update to py-bx-python
- switch to pypi downloads
- set dependencies

* Update var/spack/repos/builtin/packages/py-bx-python/package.py

I had initially pulled version 0.8.6 and then updated that to 0.8.8 but missed the change in the python specs between those two versions.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Fix version 0.7.4

- set dependency on python2
- add dependency on py-python-lzo
- add py-python-lzo package
- set py-numpy dependency to correspond to latest version that works
  with python2

* Add constraint for py-six dependency

* Update var/spack/repos/builtin/packages/py-bx-python/package.py

Ah, I had that `when` clause in and then took it out as it did not seem to be needed. I guess it is always better to be more explicit.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Remove py-numpy constraint

Let the concretizer catch the conflict with python2 and py-numpy
versions.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-24 07:54:08 -06:00
Glenn Johnson
6615fbccbc
Update py-rseqc package (#15176)
This PR depends on #15175
- add updated version
- set depedencies
2020-02-23 22:15:47 -06:00
darmac
edca0e9da2
add new package : batctl (#15160)
* add new package : batctl

* batctl: move binary to bin/
2020-02-23 22:08:03 -06:00
darmac
fd3c08e925
add new package : bubblewrap (#15162)
* add new package : bubblewrap

* bubblewrap: remove some comment in package.py
2020-02-23 22:07:39 -06:00
Todd Gamblin
5aa1739bfa Merge branch 'releases/v0.14' into develop 2020-02-23 17:32:12 -08:00
Todd Gamblin
97d46dc36f update CHANGELOG.md for 0.14.0 2020-02-23 17:08:15 -08:00
Todd Gamblin
388960f044 version bump: 0.14.0 2020-02-23 17:08:15 -08:00
Michael Kuhn
a5461f5cba
py-setproctitle: Add new package (#15170) 2020-02-23 12:46:22 -06:00
Michael Kuhn
b935d88282
create: Mention that python dependency does not have to be added (#15173)
A generic python dependency is already added implicitly by the
PythonPackage class.
2020-02-23 10:22:50 -08:00
iarspider
fd60977613
Separate HepMC2 and HepMC3 build recipes; Python3 support for HepMC3 (#15147)
* Fixes & additional variant(s) for HepMC3

* Syntax

* Restore recipe for HepMC2

* Remove FIXME

* Update package.py

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-23 12:07:00 -06:00
Seth R. Johnson
b927e3799f
Fix silex build (#15172)
* Mark silo+silex as requiring QT4

* Add missing readline dependency to silo

* Fix silo QT4 usage and verify silex works on mac

```
-- darwin-mojave-x86_64 / clang@11.0.0-apple --------------------
7gdcud4 silo@4.10.2+fortran~mpi patches=7b5a1dc2a0e358e667088d77e7caa780967fa8ea60be89c44986605df9990abe +pic+shared+silex
pk3wbwd     hdf5@1.10.6~cxx~debug~fortran+hl~mpi+pic+shared+szip~threadsafe
slsy6ko         libszip@2.1.1
xj36ejk         zlib@1.2.11+optimize+pic+shared
u4662xx     libx11@1.6.4
3lpe6j3     qt@4.8.7~dbus~examples~framework freetype=none ~gtk~opengl patches=03f9893882c63a9a9617d9ecab9caf80661c96df13f596a9b24fc4579490144a,a4f37427b34d88df6a6adc16e1e6c805087d4f3a7c658e1797450b0912fcbf5d,f17e0b5fb1f43bccadf7298533eca57294f4acab11ed83b176c61c441f745c19 ~phonon+shared~sql~ssl~tools~webkit
shdhdbh         glib@2.56.3~libmount patches=c325997b72a205ad1638bb3e3ba0e5b73e3d32ce63b2d0d3282f3e3a2ff4663c tracing=none
msyeqht             gettext@0.20.1+bzip2+curses+git~libunistring+libxml2+tar+xz
ysmjykg                 bzip2@1.0.8+shared
w354vrb                 libxml2@2.9.9~python
jg6ekuh                     libiconv@1.16
b7n722h                     xz@5.2.4
zbgxvxi                 ncurses@6.1~symlinks~termlib
2e6sifw                 tar@1.32
7yg7qah             libffi@3.2.1
zg55iyu             pcre@8.43~jit+multibyte+utf
zqrlxlz             perl@5.30.0+cpanm+shared+threads
un7wzvl             python@3.7.4+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations patches=210df3f28cde02a8135b58cc4168e70ab91dbf9097359d05938f1e2843875e57 +pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib
l4gxq46                 expat@2.2.9~libbsd
3t4dwsv                 gdbm@1.18.1
h2bjtz2                     readline@8.0
ugvknwc                 openssl@1.1.1d+systemcerts
hsmq6ou                 sqlite@3.30.1~column_metadata+fts~functions~rtree
lpfob23         icu4c@65.1 cxxstd=11
lf66vbr         inputproto@2.3.2
afovyhg         libjpeg-turbo@2.0.3
5dgw556         libmng@2.0.3 build_type=RelWithDebInfo
3z4lw2w             lcms@2.9
flleuyu                 libtiff@4.0.10
67tigfp         libpng@1.6.37
```
2020-02-23 10:45:19 -06:00
Seth R. Johnson
629c69d383
Automatically run LLDB codesign script on mac (#15169)
Newer versions of LLVM provide a one-line command to set up LLDB code
signing. Now the build will abort only if this command fails.

https://lldb.llvm.org/resources/build.html#code-signing-on-macos
2020-02-22 13:09:22 -06:00
darmac
0ea6bab984
add new package : brltty (#15161) 2020-02-22 09:02:34 -06:00
darmac
50b5e6b94b
add new package : audit-userspace (#15163) 2020-02-22 09:01:27 -06:00
darmac
1a479b5e9e
add new package : apachetop (#15164) 2020-02-22 09:00:55 -06:00
darmac
3104bfe93e
add new package : advancecomp (#15166) 2020-02-22 08:59:26 -06:00
darmac
f961f64215
add new package : acpid (#15167) 2020-02-22 08:58:54 -06:00
darmac
9f2cee43cf
lighttpd : fix pcre depends (#15168) 2020-02-22 08:58:25 -06:00
Massimiliano Culpo
82be8965f2
Emit a sensible error message if compiler's target is overly specific (#14888)
* Emit a sensible error message if compiler's target is overly specific

fixes #14798
fixes #13733

Compiler specifications require a generic architecture family as
their target. This commit improves the error message that is
displayed to users if they edit compilers.yaml and use an overly
specific name.
2020-02-21 14:50:54 -08:00
Cody Balos
16a9464b5c
sundials: add version 5.1.0 and trilinos variant (#15155)
* sundials: add version 5.1.0 and trilinos variant

* sundials: add version 5.1.0 and trilinos variant
2020-02-21 14:54:27 -06:00
Robert Blake
6764a9464d
Changes necessary to build lbann@develop (#15153)
* Necessary changes to get lbann develop to compile.

* Reformatting for flake8

* More flake8 changes.

* Removing redundant clara dependency.
2020-02-21 14:42:37 -06:00
Erik Schnetter
6d8e0699f4
shtools: New package (#15133)
* shtools: New package

* shtools: Convert to MakefilePackage, use Spack's generic compiler flags

* shtools: Make function location explicit
2020-02-21 14:30:25 -06:00
iarspider
0bc4a778bd
Add extra version of py-jsonschema (#14993)
* Add extra version of py-jsonschema

* Update dependencies

* Update dependencies + flake8

* Add py-pyrsistent package

* Update package.py

* Update var/spack/repos/builtin/packages/py-jsonschema/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

* Update package.py

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-21 14:29:42 -06:00
Erik Schnetter
4a5c64ab6e
amrex: New version 20.02 (#15132) 2020-02-21 12:52:19 -06:00
Robert Blake
abfdabd34e
Updating raja versions. (#15148) 2020-02-21 12:41:39 -06:00
Tim Haines
b399761106
Add clang compiler (#15152) 2020-02-21 12:32:55 -06:00
Nichols A. Romero
065cbf1bbe
QE+QMCPACK Converter Update February 2020 (#15135)
* Add a variant to QE that suppresses upstream patching. Need in order to do ddependency patching.

* QE variant fails to build often. Set default variant to False as a user friendly change.

* QMCPACK converter patch collides with internal QE patches. Deactivate internal patches when performing dependency patching.

* Clearer description of QE patch variant that is also flake8 compliant.
2020-02-21 12:11:35 -06:00
Seth R. Johnson
08b5264607
Disable qt3d when opengl is disabled (#15149)
* Disable qt3d when opengl is disabled

* Remove `-skip qtquick3d` unless QT 5.14

Found while checking build of qt 5.14.
2020-02-21 12:11:12 -06:00
iarspider
fabd8693b9
Add extra version of py-sqlalchemy (#15109)
* Add extra version of py-sqlalchemy

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-21 12:10:27 -06:00
Tamara Dahlgren
38fc441a36
Updated installer module copyright (#15138)
Update the copyright for `installer.py`.
2020-02-20 16:55:42 -08:00
Andrew Kamal
48375adf17
Add decentralized-internet package (#15129)
* Create package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update var/spack/repos/builtin/packages/decentralized-internet/package.py

Commit suggestion

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20 18:21:29 -06:00
Tamara Dahlgren
a03b252522
Restore package-related unsigned binary changes from PR 11107 (#15134)
Restore package-related unsigned binary changes from PR 11107
2020-02-20 14:03:47 -08:00
Peter Scheibel
2e387ef585
Package hashing: fix detection of directives (#14763)
The hashing logic looks for function calls that are Spack directives.
It expects that when a Spack directive is used that it is referenced
directly by name, and that the directive function is not itself
retrieved by calling another function. When the hashing logic
encountered a function call where the function was determined
dynamically, it would fail (attempting to access a name attribute
that does not happen to exist in this case).

This updates the hashing logic to filter out function calls where the
function is determined dynamically when looking for uses of Spack
directives.
2020-02-20 13:45:58 -08:00
Anthony Scemama
01bda12692
libf77zmq (#15125)
* libf77zmq

* Cleaning mkdirp

* Removed install function

* Renamed to f77-zmq

* Fixed Flake8

* Fixed Flake8
2020-02-20 15:34:25 -06:00
iarspider
c5134ff4f2
Add extra version of py-terminado (#15111)
* Add extra version of py-terminado

* Update package.py

* Update var/spack/repos/builtin/packages/py-terminado/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20 15:30:43 -06:00
iarspider
19af86592b
Add extra version of py-tornado; update dependencies (#15112)
* Add extra version of py-tornado

* Update package.py

* Update package.py

* Update package.py
2020-02-20 15:29:54 -06:00
iarspider
ea9aa2c7cb
Add extra version of py-typing (#15113)
* Add extra version of py-typing

* Update package.py

* Fix typo

* Update package.py
2020-02-20 15:29:12 -06:00
iarspider
0d84ee6c68
Add extra version of py-sympy (#15110)
* Add extra version of py-sympy

* Update package.py
2020-02-20 15:28:45 -06:00
iarspider
e4968a495d
Add extra version of py-widgetsnbextension (#15105)
* Add extra version of py-widgetsnbextension

* Update dependency version

* Update package.py

* Update package.py

* Update var/spack/repos/builtin/packages/py-widgetsnbextension/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20 15:28:09 -06:00
iarspider
c784799895
Add extra version of py-urllib3 (#15114)
* Add extra version of py-urllib3

* Update package.py

* Update package.py

* Update package.py

* Update var/spack/repos/builtin/packages/py-urllib3/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20 15:27:39 -06:00
iarspider
b5b19084de
Add extra version of py-wheel (#15116)
* Add extra version of py-wheel

* Update package.py

* Update package.py
2020-02-20 15:26:59 -06:00
iarspider
8b72cb64dd
Add extra version of vc (#15119)
* Add extra version of vc

* Update package.py

* Update package.py

* Update var/spack/repos/builtin/packages/vc/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-02-20 15:26:07 -06:00
Patrick Gartung
dd0e18d7b8
Use get_spec in relocated _try_install_from_binary_cache (#15131)
* Use get_spec in relocated _try_install_from_binary_cache
2020-02-20 13:07:32 -08:00