Commit graph

22809 commits

Author SHA1 Message Date
iarspider
24263c9e92
New package: py-async-lru (#26328) 2021-09-29 18:05:36 +02:00
Manuela Kuhn
7cd3af5d52
py-mffpy: add new package (#26345) 2021-09-29 17:59:50 +02:00
bernhardkaindl
4a31f0fb0f
py-mock: fix depends of @:2.0.0 and bump version (#26336)
* py-mock: fix depends of `@:2.0.0` and bump version

fixes the build of `py-gsutil`, it depends on `'py-mock@:2.0.0'`.

* Update var/spack/repos/builtin/packages/py-mock/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-mock/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Apply the other requested changes

* Add requested change: Add the python@3.6 for newer versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-29 15:39:57 +00:00
Greg Sjaardema
5132cfcc63
seacas: new release and fixes for metis/parmetis (#26310)
* seacas: new release and fixes for metis/parmetis

* Update to add sha256 checksum for latest seacas release

* Updated the documentation strings with new applications

* Fixed the metis/parmetis variants and logic depending on whether mpi
  is enabled/disabled. (There is still a zoltan issue I need to fix,
  but this will at least allow seacas to be built without
  metis/parmetis or with +mpi+parmetis.  The ~mpi+metis still needs
  work elsewhere.)

* Enable cpup, slice, zellij in +applications
2021-09-29 16:53:49 +02:00
Harmen Stoppels
9d39a1bf42
Un-unset TERM and DISPLAY (#26326)
For interactive `spack build-env`'s this is undesired behavior
2021-09-29 16:28:32 +02:00
bernhardkaindl
11278dd55a
py-monotonic: bump version to 1.6 (#26335)
Fixes `spack solve py-gsutil`: It depends on 'py-monotonic@1.4:'
2021-09-29 09:19:47 -05:00
Pat Riehecky
e45979d39a
Added OpenJDK 16.0.2 (#26322) 2021-09-29 14:19:38 +00:00
MichaelLaufer
ed54d6c926
py-netcdf4: adds parallel IO support (#26178) 2021-09-29 08:21:16 -05:00
iarspider
634b0b25c4
Add new package: py-backports-entry-points-selectable (#26329) 2021-09-29 15:09:27 +02:00
Manuela Kuhn
ac29b70d18
py-dipy: add new package (#26331) 2021-09-29 15:05:34 +02:00
Manuela Kuhn
e01947effc
py-imageio-ffmpeg: add 0.4.5, fix installation and import (#26330) 2021-09-29 14:56:16 +02:00
Manuela Kuhn
78dbac69e9
py-pyqt5-sip: add new package (#26325) 2021-09-29 14:52:29 +02:00
bernhardkaindl
80c8978691
krb5: bump version and limit depends_on('openssl') to @1 (#26332)
krb5 uses an openssl RSA API which is deprecated in OpenSSL@3.0.0
with an const/non-const mismatch.
2021-09-29 11:24:08 +00:00
Manuela Kuhn
ab6b531e10
py-argcomplete: add 1.12.3 (#26228) 2021-09-29 13:10:03 +02:00
Olli Lupton
cffa1e7f6c
Add ccache 4.4.2. (#26327) 2021-09-29 09:41:28 +00:00
Axel Huebl
c5410bd333
FFTW: NEON SIMD is float-only (#26321)
Fix on Apple Mac M1 (aarch64):
```
configure: error: NEON requires single precision
```
2021-09-29 02:40:45 +00:00
Ben Darwin
c578882bb2
itk: add version 5.2.1 (#26307) 2021-09-28 18:15:42 -07:00
Greg Sjaardema
a550416a1f
netcdf-c: Update for 4.8.1 and new download site (#26309)
NetCDF-4.8.1 has been released.

    As discussed in https://github.com/Unidata/netcdf-c/issues/2110
    (netcdf-c-4.8.1.tar.gz not on ftp site... #2110), the canonical
    download site for netCDF releases has been changed and the previous
    ftp site is no longer available.

    This PR updates the `url` to point to the new recommended download
    site and updates the sha256 checksums for the new tar files.
2021-09-28 17:21:28 -07:00
Gregory Lee
82d857dced
qhull deprecated libqhull.so in 2020.2 (#26304) 2021-09-28 16:54:30 -07:00
Manuela Kuhn
32b5669e8d
py-pytz: add 2021.1 (#26289) 2021-09-28 18:07:28 +00:00
iarspider
a2c16356a1
dire: Fix depends for new pythia version scheme (#26294)
Pythia version numbering was changed in #26255 from xyyy to x.yyy
2021-09-28 18:05:52 +02:00
Edward Hartnett
4f4984e313
wrf-io: added NOAA software maintainers, added openmp variant (#26113) 2021-09-28 08:55:09 -07:00
Tamara Dahlgren
5ace5ca7a4
Post 26211 rebase updates (#26246) 2021-09-28 08:53:59 -07:00
Manuela Kuhn
519f75b865
py-scooby: add new package (#26284) 2021-09-28 17:51:37 +02:00
Diego Alvarez
023d9e3b4c
Added OpenJDK 11.0.12_7 (#26299) 2021-09-28 17:47:45 +02:00
iarspider
9810a80c6d
Update nlohmann-json to 3.10.2 (#26260)
* Update nlohmann-json

* fix testsuite

Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-09-28 08:45:34 -07:00
Harmen Stoppels
6c33047514
Squashfs is a makefilepackage (#26300) 2021-09-28 17:45:16 +02:00
bernhardkaindl
3c5a4157b0
py-anuga: add git main version to support build with python@3.5: (#26248)
* py-anuga: add git main version to support build with python@3.5:

py-anuga's main branch has been converted to Python-3 recently.

* py-triangle: use pypi, py-anuga: Fixed depends and test suite works now
2021-09-28 10:37:09 -05:00
bernhardkaindl
d00c9b47f2
py-tomopy: version bump and master, add new deps, make runtest pass (#26252)
Current py-tomopy has many features and dependencies, add them.
2021-09-28 10:33:29 -05:00
Manuela Kuhn
79808f92ae
py-numba: add 0.54.0 and restrict old dependencies (#26281)
* py-numba: add 0.54.0 and restrict old dependencies

* Update var/spack/repos/builtin/packages/py-numba/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-28 10:32:44 -05:00
Manuela Kuhn
0f5c63b0c3
py-xlrd: add 2.0.1 (#26282) 2021-09-28 10:31:45 -05:00
Manuela Kuhn
b8dd8b07f9
py-appdirs: add 1.4.4 (#26298) 2021-09-28 10:26:23 -05:00
Diego Alvarez
f65a50d9f9
Update Nextflow (#26042) 2021-09-28 07:15:17 -04:00
Harmen Stoppels
4ce9c839ac
Add OpenSSL 3 (#26097)
* OpenSSL 3.0.0

* Remove openssl constraint in e4s to test 3.0.0

* Restrict openssl

* Restrict openssl to @:1 in unifyfs

* Revert "Remove openssl constraint in e4s to test 3.0.0"

This reverts commit 0f0355609771764280ab1b6a523c80843a4f85d6.

* Prefer 1.x
2021-09-28 10:36:55 +02:00
Massimiliano Culpo
aa8727f6f9
Move detection logic in its own package (#26119)
The logic to perform detection of already installed
packages has been extracted from cmd/external.py
and put into the spack.detection package.

In this way it can be reused programmatically for
other purposes, like bootstrapping.

The new implementation accounts for cases where the
executables are placed in a subdirectory within <prefix>/bin
2021-09-28 09:05:49 +02:00
bernhardkaindl
499d39f211
libp11: Fix build and add new version (#26135)
The build needs `pkgconfig` and `openssl`, `m4` is already added by `autoconf`.
Also add the current version of `libp11` to the list of versions.

Co-authored-by: Bernhard Kaindl <bernhard.kaindl@ait.ac.at>
2021-09-28 04:01:08 +02:00
Manuela Kuhn
cd8e85d802
py-dataclasses: add 0.8 (#26283) 2021-09-27 20:18:07 -05:00
Manuela Kuhn
c1cfbc5536
py-meshio: add 5.0.1 and 4.4.6 (#26285) 2021-09-27 20:17:22 -05:00
Manuela Kuhn
87b23cc9cd
py-deprecated: add 1.2.13 and get sources from pypi (#26286) 2021-09-27 20:15:35 -05:00
Harmen Stoppels
87450f3688
Use gnuconfig package for config file replacement (#26035)
* Use gnuconfig package for config file replacement

Currently the autotools build system tries to pick up config.sub and
config.guess files from the system (in /usr/share) on arm and power.
This is introduces an implicit system dependency which we can avoid by
distributing config.guess and config.sub files in a separate package,
such as the new `gnuconfig` package which is very lightweight/text only
(unlike automake where we previously pulled these files from as a
backup). This PR adds `gnuconfig` as an unconditional build dependency
for arm and power archs.

In case the user needs a system version of config.sub and config.guess,
they are free to mark `gnuconfig` as an external package with the prefix
pointing to the directory containing the config files:

```yaml
    gnuconfig:
      externals:
      - spec: gnuconfig@master
        prefix: /tmp/tmp.ooBlkyAKdw/lol
      buildable: false
```

Apart from that, this PR gives some better instructions for users when
replacing config files goes wrong.

* Mock needs this package too now, because autotools adds a depends_on

* Add documentation

* Make patch_config_files a prop, fix the docs, add integrations tests

* Make macOS happy
2021-09-27 18:38:14 -04:00
Tamara Dahlgren
c0da0d83ff
qhull: use secure github URLS instead of www.qhull.org downloads (#26211) 2021-09-27 14:50:43 -07:00
Manuela Kuhn
9b7a8f69fb
py-python-picard: add new package (#26268) 2021-09-27 23:39:30 +02:00
Brian Van Essen
acc8673e1a
Updated versions for cuDNN and NVSHMEM (#26272) 2021-09-27 13:54:15 -07:00
Adam J. Stewart
5c1e133d23
py-torchvision: add v0.10.1 (#26267) 2021-09-27 13:35:53 -07:00
Manuela Kuhn
1ad8c0d67d
py-llvmlite: add 0.37.0 (#26278) 2021-09-27 13:33:28 -07:00
Manuela Kuhn
044e2def4f
py-datalad: move datalad wtf test over from py-datalad-metalad (#26274)
* py-datalad: move datalad wtf test over from py-datalad-metalad

* Update var/spack/repos/builtin/packages/py-datalad/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-27 15:24:48 -05:00
Manuela Kuhn
44355a4f18
py-numexpr: add 2.7.3 (#26279) 2021-09-27 20:13:59 +00:00
Manuela Kuhn
6b94d7e6a3
py-tqdm: add 4.62.3 (#26277) 2021-09-27 19:55:22 +00:00
Manuela Kuhn
441c602d2d
py-nilearn: add 0.8.1 (#26276) 2021-09-27 14:50:13 -05:00
Thomas Madlener
285df128a1
[openloops][vbfnlo] Fix recipes and updated dependencies (#24461)
* [vbfnlo] Add doc variant to toggle building of docs

* [openloops] Add scons to dependencies

Make sure that the build_processes does not accidentally pick up a
non-suitable scons version from the underlying system

* [openloops] Set OLPYTHON to make sure the right scons is picked

* [openloops] Fix Flake8 style complaints
2021-09-27 11:40:33 -07:00