Commit graph

32949 commits

Author SHA1 Message Date
Tom Scogland
0bef599c21
update luajit and fix link on neovim to allow luajit to work on linux aarch64 (#38865) 2023-07-20 11:36:12 -07:00
Dmitriy
d1d2d76183
Add boost variant to henson and require it for aarch64 (#38916) 2023-07-20 11:29:18 -07:00
Rocco Meli
294d81e99e
Update GNINA and libmolgrid (#38978)
* pin protobuf
* explicitly select python interpreter
* remove python pin
2023-07-20 11:14:06 -07:00
Martin Aumüller
22d2ef3d5a
botan: checksum 3.1.0 and 3.1.1 (#39006) 2023-07-20 11:01:58 -07:00
Hariharan Devarajan
e087f3bf93
release gotcha 1.0.4 (#39007) 2023-07-20 10:59:52 -07:00
Martin Aumüller
ebdaa766ae
tinygltf: new versions and add release branch (#39012)
* tinygltf: new versions and release branch
   for each minor release available, the newest patch release has been added

---------

Co-authored-by: aumuell <aumuell@users.noreply.github.com>
2023-07-20 10:56:14 -07:00
Martin Aumüller
a87ee7f427
qt: make partially buildable on macos (#38990)
- drop use_xcode = True, as this would lead to an attempt install Xcode (#34064)
- don't automatically build Qt Location with +opengl, as this is
  still broken

This built sucessfully with qt@5.15.10+opengl+dbus+phonon on ventura/arm without
Xcode installed (only command line tools) - I did not check with Xcode installed.
2023-07-20 11:53:38 -05:00
Adam J. Stewart
4f0020c794
py-lightly: add v1.4.13 (#39019) 2023-07-20 09:50:24 -07:00
Jen Herting
b23c6f2851
[py-wasabi] added version 1.1.2 (#38268)
* [py-wasabi] added version 1.1.2

* [py-wasabi] flake8

* [py-wasabi]

- added dependency on py-colorama
- updated homepage

* [py-wasabi] removed python check for py-colorama

* [@spackbot] updating style on behalf of qwertos

---------

Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2023-07-20 11:14:58 -05:00
Manuela Kuhn
81f9910c26
py-stack-data: add 0.6.2 (#38952) 2023-07-20 11:03:56 -05:00
Jen Herting
b40e3898b4
[py-omegaconf] added version 2.2.2 (#38980) 2023-07-20 10:54:30 -05:00
Massimiliano Culpo
50b90e430d
spack.util.lock: add type-hints, remove **kwargs in method signatures (#39011) 2023-07-20 09:41:23 +02:00
Massimiliano Culpo
3a565c66e9
Respect custom user store when bootstrapping (#39001)
The user store is lazily evaluated. The change
in #38975 made it such that the first evaluation
was happening in the middle of swapping to user
configuration.

Ensure we construct the user store before that.
2023-07-19 19:53:33 -04:00
Joe Schoonover
01167a1471
Add new feq-parse version (#38991)
* Add new feq-parse version
* Swap 2.0.0 for 2.0.1 - resolves feq-parse build failure
2023-07-19 19:33:05 -04:00
Alberto Sartori
3caa0093f8
justbuild: add v1.1.4 (#38985) 2023-07-19 13:27:54 -07:00
Xavier Delaruelle
d9fbdfbee9
modules: use curly braces to enclose value in Tcl modulefile (#38375)
Use curly braces instead of quotes to enclose value or text in Tcl
modulefile. Within curly braces Tcl special characters like [, ] or $
are treated verbatim whereas they are evaluated within quotes.

Curly braces is Tcl recommended way to enclose verbatim content [1].

Note: if curly braces charaters are used within content, they must be
balanced. This point has been checked against current repository and no
unbalanced curly braces has been spotted.

Fixes #24243

[1] https://wiki.tcl-lang.org/page/Tcl+Minimal+Escaping+Style
2023-07-19 17:57:37 +02:00
Jen Herting
ae08b25dac
[py-openapi-schema-pydantic] New package (#38973) 2023-07-19 15:26:55 +02:00
Jen Herting
9ccb018b23
[py-langsmith] New package (#38971) 2023-07-19 15:21:57 +02:00
Harmen Stoppels
185bccb70f
Fetch & patch: actually acquire stage lock, and many more issues (#38903)
* Fetching patches wouldn't result in acquiring a stage lock during install
* The installer would acquire a stage lock *after* fetching instead of
   before, leading to races
* The name of the stage for patches was random, so on build failure
   (where stage dirs are not removed), these directories would continue
   to exist after a second successful install.
* There was this redundant "composite fetch" object -- there's already
   a composite stage. Remove this.
* For some reason we do *double* shasum validation of patches, before
   and after compression -- that's just too much? I removed it.
2023-07-19 15:06:56 +02:00
Jen Herting
8c8186c757
[py-uc-micro-py] New package (#38967) 2023-07-19 14:19:45 +02:00
Jen Herting
8a76430039
[py-pydub] new package (#38966) 2023-07-19 14:07:31 +02:00
Jen Herting
33939656e2
[py-hatch-requirements-txt] new package (#38965) 2023-07-19 14:03:21 +02:00
Jen Herting
950b5579fb
[py-ffmpy] New package (#38964) 2023-07-19 14:00:31 +02:00
Jen Herting
d996b4d240
[py-colorama] added version 0.4.6 (#38737)
* [py-colorama] added version 0.4.6

* [py-colorama] limited py-setuptools dependency
2023-07-19 13:51:25 +02:00
Harmen Stoppels
886946395d
drop redundant rpaths post install (#38976)
Spack heuristically adds `<install prefix>/lib` and `<install prefix>/lib64` as rpath entries, as it doesn't know what the install dir is going to be ahead of the build. This PR cleans up non-existing, absolute paths[^1], which

1. avoids redundant stat calls at runtime
2. drops redundant rpaths in `patchelf`, making it relocatable -- you don't need patchelf recursively then.

[^1]: It also removes relative paths not starting with `$` (so, `$ORIGIN/../lib` is retained -- we _could_ interpolate `$ORIGIN`, but that's hard to get right when symlinks have to be taken into account). Relative paths _are_ supported in glibc, but are relative to _the current working directory_, which is madness, and it would be better to drop those paths.
2023-07-19 09:48:31 +00:00
Adam J. Stewart
57b69c9703
py-cython: add v3.0.0 (#38961) 2023-07-19 11:24:35 +02:00
Massimiliano Culpo
f34c93c5f8
llnl.util.lock: add type-hints (#38977)
Also uppercase global variables in the module
2023-07-19 11:23:08 +02:00
Massimiliano Culpo
a7f2abf924
Remove LazyReference from code (#38944)
A LazyReference object is a reference to an attribute of a 
lazily evaluated singleton. Its only purpose is to let developers
use shorter names to refer to such attribute.

This class does more harm than good, as it obfuscates the fact
that we are using the attribute of a global object. Also, it can easily
go out of sync with the singleton it refers to if, for instance, the
singleton is updated but the references are not.

This commit removes the LazyReference class entirely, and access
the attributes explicitly passing through the global value to which
they are attached.
2023-07-19 11:08:51 +02:00
Aiden Grossman
a99eaa9541
magma: add package name to conflict messages (#38984)
Without the package name being present in the conflict messages, it is
significantly more difficult to debug concretization failures in
environments that contain many packages.
2023-07-19 03:47:26 -04:00
downloadico
76b6436ade
petsc: add version 3.19.3 (#38974) 2023-07-19 08:32:58 +02:00
Emil Briggs
0facda31eb
rmgdft: add v5.3.1, v5.4.0 and cuda variant (#37813)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-07-19 08:30:37 +02:00
Aiden Grossman
032fd38af0
mesa-glu: Patch register long to long (#38833)
mesa-glu still has a couple instances of the register keyword which
causes build failures with clang on my platform. This patch removes the
register keyword which doesn't have any impact on correctness.
2023-07-19 08:29:24 +02:00
Aiden Grossman
b04b3aed9e
gperf: patch usage of register keyword (#38893)
gperf still uses the register keyword in one place which makes
compilation fail with c++17. This patch adds in a patch file to remove
the usage of the reigster keyword so that it compiles properly.
2023-07-19 08:28:57 +02:00
Aiden Grossman
90b2e402f5
elfutils: remove conflicts with clang after version 0.186 (#38945)
In late 2021 elfutils was patched to make it build with clang, and these
patches ended up in version 0.186. This commit updates the conflicts to
specify this so elfutils can be built with clang.
2023-07-19 08:28:13 +02:00
Carlos Bederián
1f17f44def
amdfftw: turn conflicts into conditional variants (#38221) 2023-07-19 08:23:40 +02:00
Sebastian Grimberg
cf87d9f199
palace: fix bugs introduced in #38910 (#38983) 2023-07-19 07:21:06 +02:00
Rocco Meli
d7a1a61702
Improve RDKit package (#36566) 2023-07-18 20:57:55 -04:00
markus-ferrell
416edfa229
Windows testing: enable tests for installer components (#36970)
These tests now work without any changes to core. Furthermore, it is
surprising that they had to be disabled (at least, as long as the
installer.py tests are run on Windows: these tests are more-basic
and their functionality would have been exercised automatically).
2023-07-18 16:19:14 -07:00
Sebastian Grimberg
9beb02ea83
palace: add v0.11.2 (#38910) 2023-07-18 22:29:35 +00:00
Manuela Kuhn
ce4162e28b
py-poetry-core: add 1.6.1 and fix url (#38452)
* py-poetry-core: add 1.6.1 and fix url

* Update var/spack/repos/builtin/packages/py-poetry-core/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Re-add python upper bound for older versions

* Update var/spack/repos/builtin/packages/py-poetry-core/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-18 18:10:14 -04:00
Massimiliano Culpo
14f3297cca
Ensure the bootstrap store has a padding length of zero (#38975)
Without this PR, padded length was propagating from user configuration to
bootstrap configuration, and was causing the issue reported in #38963
2023-07-18 23:49:22 +02:00
markus-ferrell
f24f98a1e2
Windows testing: enable bootstrap test (#36972) 2023-07-18 14:42:26 -07:00
Julien Loiseau
64361e1fc7
FleCSPH: update package (#37888)
Co-authored-by: Richard Berger <richard.berger@outlook.com>
2023-07-18 23:06:36 +02:00
Aiden Grossman
9a05dce3bf
fftw: fix build with clang15+ (#38889)
In Clang 15, -Wint-conversion became an error instead of a warning,
breaking the fftw build for clang versions > 15. This patch fixes fftw
builds with clang 15+ by passing -Wno-error=int-conversion as a cflag.
2023-07-18 23:02:51 +02:00
markus-ferrell
ffc283ab8b
test_clear_failures_success: run on Windows too (#36792) 2023-07-18 22:42:57 +02:00
Harmen Stoppels
3fef586cfb
binary cache docs: remove redundant flag and comment (#38960) 2023-07-18 22:38:04 +02:00
eugeneswalker
515b53ac50
e4s cray: expand spec list (#38947)
* e4s cray: expand spec list

* unzip: require %gcc

* remove datatrasnferkit
2023-07-18 20:04:26 +00:00
markus-ferrell
b710778bda
Windows testing: enable architecture test (#36973)
Works out of the box: remove skip.
2023-07-18 12:33:52 -07:00
markus-ferrell
a965fe9354
Windows testing: enable "spack clean" tests (#36840)
They work out out of the box on windows. Simply removing skips.
2023-07-18 12:25:32 -07:00
fpruvost
e47a2a7a65
chameleon: update to version 1.2.0 (#38936) 2023-07-18 12:57:42 -04:00