This PR fixes a couple of things with the libbeagle package.
- libbeagle can only be built for one GPU type. Add a test for that.
- version 2 had the arch statement in
libhmsbeagle/GPU/kernels/Makefile.am but version 3 has it in
configure.ac. Put the variant specified value in configure.ac for
consistency.
Due to recent changes in the `netcdf-c` package, it is now necessary to explicitly request a non-mpi-enabled hdf5 build if building a non-mpi-enabled seacas.
* libvdwxc: unbreak concretization, request fftw-api
mixing both fftw and fftw-api in a dependency tree can trigger the
following:
```
$ spack spec cp2k@master +sirius
==> [2020-09-16-12:36:06.552981] sirius applying constraint gsl
==> [2020-09-16-12:36:06.554270] sirius applying constraint openblas@0.3.10%gcc@7.5.0~consistent_fpcsr~ilp64+pic+shared threads=none arch=linux-opensuse_leap15-sandybridge
Traceback (most recent call last):
File "./bin/spack", line 64, in <module>
sys.exit(spack.main.main())
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/main.py", line 762, in main
return _invoke_command(command, parser, args, unknown)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/main.py", line 490, in _invoke_command
return_val = command(parser, args)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/cmd/spec.py", line 103, in spec
spec.concretize()
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2228, in concretize
user_spec_deps=user_spec_deps),
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2716, in normalize
visited, all_spec_deps, provider_index, tests)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2654, in _normalize_helper
dep, visited, spec_deps, provider_index, tests)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2613, in _merge_dependency
visited, spec_deps, provider_index, tests)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2654, in _normalize_helper
dep, visited, spec_deps, provider_index, tests)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2554, in _merge_dependency
provider = self._find_provider(dep, provider_index)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2489, in _find_provider
providers = provider_index.providers_for(vdep)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/provider_index.py", line 80, in providers_for
return sorted(s.copy() for s in result)
File "/data/tiziano/debug-spack/spack2/lib/spack/llnl/util/lang.py", line 249, in <lambda>
lambda s, o: o is not None and s._cmp_key() < o._cmp_key())
TypeError: '<' not supported between instances of 'str' and 'NoneType'
```
while at the same point disallowing MKL as a fftw provider.
Solving both issues by depending on `fftw-api@3` instead and adding a
conflict on `^fftw~mpi` when using `+mpi` (thanks to alalazo).
* cp2k: use conflicts instead of runtime checks for fftw/openblas variants
* Initial Draft of Cosmoflow Spackage
Need to add in logic to streamline cpu/gpu builds
* Added ~cuda logic to cosmoflow spackage
Added logic to support a ~cuda build for cosmoflow
* Requested Changes to Cosmoflow Spackage
Made requested changes to cosmoflow spackage
* Likwid versions >= 5.0.0 depend on Lua 5.2.
According to https://github.com/RRZE-HPC/likwid/issues/324 recent
versions of Likwid require Lua 5.2.
* Update var/spack/repos/builtin/packages/likwid/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
MatIO development has switched to github from sourceforge. Updated the `git` and `url` variables and added the four new versions (1.5.14 -- 1.5.17) that have been released since the last update of this package.
* qbox: install to correct directory structure
* qbox: Have qb executable put in bin rather than src subdir
* qbox: Fix python script shebangs to use python from path
* qbox: Add dependencies on gnuplot, python2 for utilities
* qbox: fix flake8 issue
* qbox: Add $prefix/util to PATH
* Initial CRADL Spackage Work
Currently resolving ```--single-version-externally-managed``` error
* Fixed GPUtil Issues
Thanks to Vinay Ramakrishnaiah for overwriting install
* Finished CRADL Install Function
Finished CRADL install function which is basically copying the scripts
to the install directory. Also resolved flake8 issues for PR purposes
* Add new package: webbench
* Update var/spack/repos/builtin/packages/webbench/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* cpio: add --rtlib=compiler-rt for %fj
* cpio: simplify if
* Update var/spack/repos/builtin/packages/cpio/package.py
This seems better.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add new package: hping
* Update var/spack/repos/builtin/packages/hping/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/hping/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
Fix flake8 errors
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* ncurses: adding external support.
* Update var/spack/repos/builtin/packages/ncurses/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/ncurses/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/ncurses/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Fixing includes.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Checksummed New Flux Versions
Checksummed new flux versions to let spack detect them
* Added CXXFlags to build Flux-sched
Added missing cxxflags to build flux-sched
* Adding Cuda Variant to SW4Lite
Added cuda variant of sw4lite as per guidance in README
* Updated SW4Lite+cuda to Current Header Conventions
Updated sw4lite+cuda to use current conventions for spackage include
dirs
* Fixing FLake8 Issue with Sw4lite+cuda Fix
Fixed overly long line and further underlined sticky note reminding me
to run flake8 BEFORE pushing
* Switching to Spack Compiler Wrapper
Switching to spack compiler wrapper for consistency
* Orca: Add new versions.
* Orca: Support OpenMPI without the legacy wrappers.
By default, Spack builds OpenMPI without the legacy wrappers when using the Slurm scheduler. This breaks Orca since its binaries are hardcoded to call "mpirun". To workaround this issue, add a "mpirun" wrapper which calls "srun" when required.
* cp2k: do not support ~openmp for v8+
* sirius: version bump
* cp2k: fix overlapping deps for elpa
fixes#18029
* cp2k: update SIRIUS dependency for v8+
* spfft: requires CMake 3.11+
* cp2k: fix build with +sirius
* darshan-util: remove return(-1) from void function
* Update var/spack/repos/builtin/packages/darshan-util/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/darshan-util/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* gamess-ri-mp2-miniapp: initial import
* flake8
* Update var/spack/repos/builtin/packages/gamess-ri-mp2-miniapp/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Starting with OpenSceneGraph 3.5.5, support for windows managed by Qt
has been moved to the seperate project osgQt. Hence, a dependency on Qt
is not needed any longer for version 3.5.5 or newer.
In order to still satisfy the dependency on OpenGL, a depends_on('gl')
has been added.
without setting the build enviroment, the installation fails with
```
1 error found in build log:
35946 fmtutil [INFO]: /usr/local/pkg/Installs/linux-ubuntu18.04-skylake_avx512/gcc7.4.0/texlive/20190410/rgs2nakycorkgzno/t
exmf-var/web2c/pdftex/pdfcslatex.fmt installed.
35947 fmtutil [INFO]: Disabled formats: 6
35948 fmtutil [INFO]: Successfully rebuilt formats: 45
35949 fmtutil [INFO]: Total formats: 51
35950 fmtutil [INFO]: exiting with status 0
35951 ==> [2020-09-07-21:23:21.482745] '/usr/local/pkg/Installs/linux-ubuntu18.04-skylake_avx512/gcc7.4.0/texlive/20190410/
rgs2nakycorkgzno/bin/x86_64-linux/mtxrun' '--generate'
>> 35952 /usr/bin/env: 'texlua': No such file or directory
```
May be there is a better way...
Cython requires a library that is available in Python 3.8, or before
Python 3.8 with setuptools. This specifies that setuptools is a run
dependency to allow running with Python < 3.8
* new package: py-textblob
add variant to py-nltk to allow for data download/installation
add dependencies to py-nltk so that bin/nltk works
* add resources and resource generation script
At some point in the build phase a script
spack-src/scripts/convert-template
has a shebang looking for python in the path.
Currently this picks up system python if in invoker's path, but should
be using python from spack, so add a build dependency on python.
Many system-installed binaries (at least in Debian) are built against a
libtinfo.so that has versioned symbols. If spack builds a version without this
functionality, and it winds up in the user's LD_LIBRARY_PATH via spack load,
system binaries will begin to complain.
```
$ less log.txt
less: /opt/spack/.../libtinfo.so.6: no version information available (required by less)
```
Co-authored-by: Luke D'Alessandro <ldalessa@uw.edu>
* Add rocm 3.7.0 libs
* Make 3.7.0-only dependency on numactl explicit
* Add rocm-device-libs dep to rocm-clang-ocl
* Update the cmakelists dir in rocm-debug-agant
* Make rocm-debug-agent work on 3.7.0
* Disable tensile host; following rocm-arch recommendations
* ldak: new package at 5.1
* flake8
* Re-run tests
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* new package: py-gitdb
* Update var/spack/repos/builtin/packages/py-gitdb/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Set GOPATH in build environment to avoid creating files in the user's
default GOPATH (e.g. ~/go).
* Support for external find.
* Added latest releease 0.74.3.
Remove prior built-in Trilinos subrepository.
Added a Trilinos conflict discovered while documenting ForTrilinos:
```
***
*** ERROR: Setting Trilinos_ENABLE_SEACASExodus=OFF which was 'ON' because SEACASExodus has a required library dependence on disabled TPL Netcdf!
***
```
* [py-torch-geometric] depends on py-torch-sparse
* [py-torch-geometric] setting TORCH_CUDA_ARCH_LIST
* [py-torch-geometric] added the rest of the dependencies
* [py-torch-geometric] added cuda variant and added more build env vars
* [py-torch-geometric] added variant info for depenedencies
* [py-torch-geometric] flake8
* [py-torch-geometric] add variant description
* HPCC Benchmark: added HPC Challenge (HPCC) benchmark
* HPCC Benchmark: modified error message on lack of fftw2 interface in MKL
* hpcc: fixed styling add one more installation example
* hpcc: styling fix
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* hpcc: changed include and lib location setter
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* hpcc: fixed styling add one more installation example
* hpcc: removed readme.md
* hpcc: develop repo now is in github
* hpcc: march arguments are set explicitly in case of intel compilers, added -restrict flag, which needed for older intel compilers (at least <=19.0.5.281)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* wrf: new package
* wrf: fix install dir
* wrf: ndown location
* Add more compiler and nesting options to wrf package
* Fix configure that didn't find pgf90, use tempfile and compile in parallel
* WRF v4.2 with parallel I/O support through pnetcdf
Signed-off-by: michael laufer <michael.laufer@toganetworks.com>
* extend Package, compiler wrapper now used, small fixes
Signed-off-by: michael laufer <michael.laufer@toganetworks.com>
* Update var/spack/repos/builtin/packages/wrf/package.py
fixed typo
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Levi Baber <baberlevi@gmail.com>
Co-authored-by: eXact lab <info@exact-lab.it>
Co-authored-by: michael laufer <michael.laufer@toganetworks.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* new package: py-update-checker
* add test deps
* Update var/spack/repos/builtin/packages/py-update-checker/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-update-checker/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-update-checker/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* remove lint stuff.
Co-authored-by: Sinan81 <Sinan81@earth>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
`configure` script of Modules 4.5.2 is a bit too strict and breaks when
special options like `--disable-dependency-tracking` are set. This issue
will be fixed on Modules project starting version 4.5.3
(cea-hpc/modules#354).
This change adapts `configure` options set when installing version 4.5.2
to avoid options unrecognized on this version.
Fix#18420
* libvterm: renumber version and add 1.0.3
neovim: build on aarrch64
* Remove unneeded comment.
* libvterm: newer bazaar snapshot version is set to version 0.0.
neovim: change for libvterm version change, and libtermkey version bug is fixed.
* update libvterm versions.
* Add new package: byte-unixbench
* refine install flow
* Update var/spack/repos/builtin/packages/byte-unixbench/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* new package: py-rios
* flake8
* Update var/spack/repos/builtin/packages/py-rios/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add new package: leptonica
* Update var/spack/repos/builtin/packages/leptonica/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-spacy: new version 2.3.2
update en-core-web-sm to @2.3.1
add en-vectors-web-lg@2.3.0
* update deps
* wasabi
Co-authored-by: Andrew Elble <aweits@localhost.localdomain>
* Update version for package Draco
+ Add support for `draco-7.7.0`.
+ Introduces new `+cuda` variant. This variant is only allowed in version
`7.7.0:`.
+ Restrict `random123` to compatible versions.
+ Restrict `libquo` to compatible versions.
+ Moving forward, require `python@3:`
+ Moving forward, the ``+superlu_dist` variant is not longer supported.
+ Improve printed output for `--test` mode by adding `ctest` option
`--output-on-failure`
+ Provide a patch to support for IBM Spectrum-MPI in version `7.7.0:`
+ Provide a patch to allow variant `~cuda` to actually disable GPU portions of
the code when a GPU is discovered on the local system.
* Remove unnecessary function decoration.
* Adding externals for bison and flex
Added because bison actually pulls in a ton of stuff.
* Need to escape parentheses.
* Need to add re package.
* Adding re package.
* spectrum-mpi: adding external support.
* Package is tested, works on LLNL lassen
* Spectrum external now detects the correct compiler
* Changing code to not output all compilers
Done per becker33's request on #18055
