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Author SHA1 Message Date
Alberto Invernizzi
7968cb7fa2
mpich: fix macos problem with -flat-namespace (#35611) 
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2023-08-10 08:34:33 -04:00
Nicholas Sly
ebc2efdfd2
Add LLVM_ENABLE_RTTI option to llvm-amdgpu package, required by mesa. (#35655) 2023-08-10 07:14:02 -04:00
Harmen Stoppels
ff07fd5ccb
Remove qt variant in cmake (#39360) 
`cmake+qt` depends on `qt`, which depends on `libmng`, which is a CMake
package, and has been for 4 years. Nobody ever complained about
`cmake+qt` not concretizing... so why pay the solve cost.


Before:

```
    setup          3.779s
    load           0.018s
    ground         2.625s
    solve          4.511s
    total         11.236s
```

After:

```
    setup          3.734s
    load           0.018s
    ground         0.468s
    solve          0.560s
    total          5.080s
```
 2023-08-10 05:59:22 -04:00
dependabot[bot]
3f83ef6566
build(deps): bump flake8 from 6.0.0 to 6.1.0 in /lib/spack/docs (#39366) 
Bumps [flake8](https://github.com/pycqa/flake8) from 6.0.0 to 6.1.0.
- [Commits](https://github.com/pycqa/flake8/compare/6.0.0...6.1.0)

---
updated-dependencies:
- dependency-name: flake8
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-08-10 05:34:33 -04:00
dependabot[bot]
554ce7f063
build(deps): bump sphinx-design from 0.4.1 to 0.5.0 in /lib/spack/docs (#39367) 
Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.4.1 to 0.5.0.
- [Release notes](https://github.com/executablebooks/sphinx-design/releases)
- [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md)
- [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.4.1...v0.5.0)

---
updated-dependencies:
- dependency-name: sphinx-design
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-08-10 05:29:52 -04:00
Aiden Grossman
23963779f4
Prefix conflict messages with package name (#39106) 
* Prefix conflict messages with package name

This patch prefixes all conflict messages with the package name to
alleviate what was otherwise a very manual process. Note that this patch
is a one line change but has a fairly outsized impact.

* same for requires directive

---------

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
 2023-08-10 08:09:00 +00:00
Ricard Zarco Badia
45c5af10c3
Fixed broken calls to _if_ninja_target_execute (#38992) 
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2023-08-10 09:34:02 +02:00
Harmen Stoppels
532a37e7ba
Revert "Spec versions: allow git. references for branches with / (#38239)" (#39354) 
This reverts commit 3453259c98.
 2023-08-10 08:56:39 +02:00
Cristian Di Pietrantonio
aeb9a92845
ncview: change URL for source code (#39321) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-10 08:38:58 +02:00
dependabot[bot]
a3c7ad7669
build(deps): bump urllib3 from 2.0.3 to 2.0.4 in /lib/spack/docs (#39002) 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.3 to 2.0.4.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.3...2.0.4)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-08-10 05:04:58 +00:00
Juan Miguel Carceller
b99288dcae
edm4hep: add edm4hep to PYTHONPATH (#38407) 
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2023-08-09 18:22:17 -05:00
markus-ferrell
01b7cc5106
Windows: enable more stage tests (#36834) 
Enable some already-supported tests (no changes to staging logic).
 2023-08-09 14:24:30 -07:00
pabloaledo
f5888d8127
picard: add variant with jvm arguments (#39204) 
* picard: add variant with jvm arguments
* fix variant and update wrapper script

---------

Signed-off-by: Pablo <pablo.aledo@seqera.io>
 2023-08-09 13:24:34 -07:00
Jennifer Green
77c838ca93
libhio: package update for new sha256 checksum for v1.4.1.5 (#38696) 2023-08-09 12:10:37 -07:00
Alec Scott
11e538d962
emacs: Add v29.1 (#39147) 2023-08-09 11:32:04 -07:00
Axel Huebl
7d444038ee
AMReX: 23.06+ Multi-Dim Support (#37695) 
* AMReX: 23.06+ Multi-Dim Support

This updated the Spack package to allow to install AMReX, modules of
AMReX in E4S deployments and dependent packages with support for
multiple dimensions. Due to an upstream change in AMReX, we do not
longer need to ship three, binary incompatible package variants.

* [E4S] oneAPI AMReX < 23.06 Variant

Work-around the auto-concretization to the multi-dim of `dimensions`,
which only in 23.06+ became a multi-variant.

* e4s cray rhel ci: temporarily disable amrex build until spurious ci failure can be resolved

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
 2023-08-09 11:25:43 -07:00
Hariharan Devarajan
c24471834b
Release brahma 0.0.1 (#39345) 
* release brahma 0.0.1
 2023-08-09 11:18:52 -07:00
Andrey Parfenov
b1e33ae37b
add info about devito and qe for intel env (#39357) 
Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
 2023-08-09 12:47:35 -04:00
Jordan Galby
c36617f9da
Fix package.py error handling bug (#39017) 2023-08-09 17:47:43 +02:00
dependabot[bot]
deadb64206
build(deps): bump black from 23.1.0 to 23.7.0 in /lib/spack/docs (#38982) 
Bumps [black](https://github.com/psf/black) from 23.1.0 to 23.7.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.1.0...23.7.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-08-09 17:19:49 +02:00
Massimiliano Culpo
9eaa88e467
caliper: deprecate old versions (#39352) 2023-08-09 17:11:57 +02:00
Juan Miguel Carceller
bd58801415
dd4hep: fix setting LD_LIBRARY_PATH (#38015) 
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2023-08-09 16:42:05 +02:00
Juan Miguel Carceller
548a9de671
py-setuptools-scm: add a git dependency (#36770) 
* Add a git dependency

* Add the dependency only for building

* Change dependency to build and run

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-08-09 10:38:46 -04:00
Harmen Stoppels
8e7c53a8ba
package import: remove magic import line (#39183) 2023-08-09 14:28:06 +00:00
Tamara Dahlgren
5e630174a1
cpmd: convert to new stand-alone test process (#35744) 2023-08-09 15:59:51 +02:00
Cristian Di Pietrantonio
175a65dfba
libzmq: do not treat warnings as errors during compilation. (#39325) 
The package won't compile with newer compilers because warnings
are converted to errors. Hence, disable such conversion.

Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-09 15:57:43 +02:00
Adam J. Stewart
39d4c402d5
Fix suffix of tab completion scripts (#39154) 2023-08-09 08:28:55 -05:00
Harmen Stoppels
e51748ee8f
zlib-api: new virtual with zlib/zlib-ng as providers (#37372) 
Introduces a new virtual zlib-api, which replaces zlib in most packages.

This allows users to switch to zlib-ng by default for better performance.
 2023-08-09 09:22:58 -04:00
Alec Scott
f9457fa80b
cxxopts: add v3.1.1 (#37977) 2023-08-09 14:31:10 +02:00
Alec Scott
4cc2ca3e2e
rclone: add v1.63.1 and remove previously deprecated versions (#39148) 2023-08-09 14:30:33 +02:00
Massimiliano Culpo
3843001004
Fixed bugs discovered in conflicts directives (#39338) 2023-08-09 14:20:49 +02:00
Cristian Di Pietrantonio
e24bb5dd1c
Changes the way MPICC is set (#39327) 2023-08-09 07:04:04 -05:00
Cristian Di Pietrantonio
f6013114eb
nwchem: make sure to link both single and double precision fftw libraries. (#39333) 
With the previous version of the recipe I would get linking errors due
to missing `-lfftw3f`.

Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-09 14:03:15 +02:00
Martin Aumüller
bdca875eb3
protobuf: fix build for 3.21 on Centos 8 (#39162) 
apply upstream patch
 2023-08-09 13:44:05 +02:00
pabloaledo
af8c392de2
fq: add new package (#39205) 
Signed-off-by: Pablo <pablo.aledo@seqera.io>
 2023-08-09 06:23:44 -04:00
Jonathon Anderson
9aa3b4619b
containerize: ensure bootstrap images contain all system dependencies (#36818) 
This also makes `spack bootstrap status` exit 1 if some dependency is missing
 2023-08-09 09:46:59 +02:00
Cristian Di Pietrantonio
3d733da70a
idg: add new package (#39316) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-09 02:45:34 -05:00
Cristian Di Pietrantonio
cda99b792c
miniocli: add new package (#39318) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2023-08-09 03:43:29 -04:00
Gerhard Theurich
9834bad82e
esmf: specify build dependency on CMake when using internal ParallelIO (#39347) 2023-08-09 09:14:28 +02:00
Peter Scheibel
3453259c98
Spec versions: allow git. references for branches with / (#38239) 2023-08-09 09:07:04 +02:00
Adam J. Stewart
ee243b84eb
py-lightly: add v1.4.15 (#39348) 2023-08-09 09:01:41 +02:00
Adam J. Stewart
5080e2cb45
py-torchmetrics: add v1.0.3 (#39349) 2023-08-09 09:01:23 +02:00
Cristian Di Pietrantonio
f42ef7aea7
ior: add lustre variant (#39320) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-09 08:59:21 +02:00
Jon Rood
41793673d9
hypre: fix typo in --with-sycl option. (#39351) 2023-08-09 08:37:15 +02:00
Cristian Di Pietrantonio
8b6a6982ee
caliper: add KOKKOS variant. (#39312) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2023-08-09 08:35:56 +02:00
Cristian Di Pietrantonio
ee74ca6391
beast2: add dependency on libbeagle. (#39311) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-09 08:33:53 +02:00
Cristian Di Pietrantonio
7165e70186
chgcentre: fix compilation error by using explicit casting (#39315) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-09 08:32:58 +02:00
Massimiliano Culpo
97d632a161
Push conflict between rocm and blt down to packages that actually use blt (#39339) 2023-08-09 07:53:17 +02:00
Alec Scott
571919992d
go: add v1.20.6 and v1.19.11, deprecate previous versions due to CVE-2023-29405 (#39149) 2023-08-08 16:38:21 -07:00
snehring
99112ad2ad
Update py-gtdbtk to 2.3.2 (#39296) 
* fastani: adding version 1.34 and changing build_system

* py-gtdbtk: adding version 2.3.2

* fastani: adding requested changes

* py-gtdbtk: adding requested changes

* fastani: remove conditional
 2023-08-08 18:33:56 -05:00