Commit graph

2858 commits

Author SHA1 Message Date
Massimiliano Culpo
a7a77b5b41 openjpeg: fixes url (#2790) 2017-01-10 09:14:16 -08:00
Adam J. Stewart
1ece25bdc2 Temporary workaround for R concretization bug (#2756) 2017-01-09 19:07:49 -08:00
sknigh
c7ca96b327 Added list_url to r-dt package (#1533) 2017-01-09 14:37:06 -08:00
Elizabeth Fischer
402dfe30f9 Get Rid of nobuild, nolink, and alldeps (#2765)
* Removing the nobuild, nolink, and alldeps dependency types in favor of being explicit.
* This will help with maintenance going forward, as adding more dependency types won't affect existing declared dependencies in weird ways.
* default deptype is still `('build', 'link')`
2017-01-07 19:59:02 -08:00
Adam J. Stewart
68baac0549 Various updates to the NCO package and dependencies (#2639)
* Remove +mpi variant from NCO

* Update NCO deps to AutotoolsPackage

* Update the other NetCDF packages to AutotoolsPackage

* ANTLR has a nolink deptype on java, don't worry about csharp

* Remove restrictions from NCO package, fix homepage

* Add version 4.6.3 of NCO

* Missed AutotoolsPackage for NetCDF-CXX4

* NetCDF tests fail when run in parallel

* Remove commented out dependency

* Add documentation dependency
2017-01-07 18:06:59 -08:00
Adam J. Stewart
a0195371e8 Unset PETSC_DIR during installation (#2768)
* Set PETSC_DIR during installation

* Move env var unsets to setup_environment

* Fix unset var name and number of args
2017-01-07 17:38:53 -08:00
James Wynne III
b7fdc03bd5 Added needed deps for bbcp (#2773) 2017-01-07 16:30:54 -08:00
Adam J. Stewart
daff3c0908 Preliminary RPackage class (#2761) 2017-01-07 16:28:52 -08:00
Todd Gamblin
f379697985 Fix issues linking hDF5 1.8.14 and below on Ubuntu. (#2772) 2017-01-07 09:03:50 -08:00
Cyrus Harrison
e39ba88e9c add conduit 0.2.1 release (#2766) 2017-01-06 12:33:51 -08:00
Bruno Turcksin
2f173bda9c Add boost 1.63.0 (#2743) 2017-01-06 11:44:41 -08:00
Gregory Lee
a016fd01ec Merge pull request #2740 from jrood-nrel/jonrood
Renaming mkl to intel-mkl
2017-01-06 11:01:16 -08:00
Gregory Lee
7b337de93e various python package version and dependency updates (#2751)
* various python package version and dependency updates

* various python package version and dependency updates
2017-01-06 08:50:06 -08:00
Christoph Junghans
8dc056130c espressopp: package for the ESPResSo++ software (#2602)
* espressopp: package for the ESPResSo++ software

This commit adds a package for the ESPResSo++
simulation software.

* Move Espressopp package to CMakePackage

This commit moves Espressopp package to CMakePackage.
Addresses some comments in the PR.

* Remove run_tests and changed type of dependencies

Addressed some comments from @adamjstewart.
Removed global run_tests setting and removed type from many
dependencies. Set type for py-mpi4py to 'nolink'.

* Updated to last version and fix mpi4py dependency

Added latest espressopp version and changed mpi4py (version) dependency for
different espressopp versions.

* Changed mpi4py version requirements for espressopp

Changed py-mpi4py version requirements for espressopp@1.9.4 according
to the package build requirements for that version.
2017-01-05 21:20:55 -08:00
Matthew Krafczyk
8c650303ff Add dependencies and finish the py-tornado package.
This adds the following packages:

 py-backports-shutil-get-terminal-size  py-nbformat
 py-backports-ssl-match-hostname        py-pathlib2
 py-entrypoints                         py-pickleshare
 py-futures                             py-pip
 py-ipykernel                           py-prompt-toolkit
 py-ipython-genutils                    py-ptyprocess
 py-ipywidgets                          py-simplegeneric
 py-jupyter-client                      py-singledispatch
 py-jupyter-console                     py-terminado
 py-jupyter-core                        py-traitlets
 py-jupyter-notebook                    py-wcwidth
 py-monotonic                           py-widgetsnbextension
 py-nbconvert
2017-01-05 16:10:30 -08:00
Jean-Paul Pelteret
6a5185a2a7 Added npm, node.js, and Jupyter dependencies
Adds the following packages:
  node-js  py-backports-abc  py-functools32  py-pycurl   py-vcversione
  npm      py-certifi        py-jsonschema   py-tornado  py-zmq

- Added python packages that are dependencies for the Jupyter suite
- Update new python packaages to use extension package install function.
- Added npm and node-js packages
2017-01-05 16:10:30 -08:00
Elizabeth Fischer
3dd4a01a5e Standardize package names: lower-case, not Mixed_CASE (#2475)
* Rename packages

* Upcasing depends_on() in packages.

* Downcased extends('r')

* Fixed erroneously changed URL that had slipped through.

* Fixed typo

* Fixed link from documentation into package source code.

* Fixed another doc problem.

* Changed underscores to dashes in package names.

* Added test to enforce lowercase, no-underscore naming convention.

* Fix r-xgboost

* Downcase more instances of 'R' in package auto-creation.

* Fix test.

* Converted unit test packages to use dashes not underscores

* Downcase `r` in the docs.

* Update module_file_support.rst

Fix r->R for class R.
2017-01-04 18:24:07 -08:00
Jon Rood
01406251c9 Intel-mkl provides mkl 2017-01-04 14:02:23 -07:00
Jon Rood
c8405b4b5f Renaming mkl to intel-mkl 2017-01-04 13:55:08 -07:00
George Hartzell
4e653254c5 Use zlib's "fossil" site for old tarballs (#2735)
* Use zlib's "fossil" site for old tarballs

Following citibeth's suggestion in #2732, use zlib's "fossil"
site (not to be confused with the sqlite team's VCS...) for retrieving
old tarballs.

Digests for 1.2.{8,10} match and both install for me on CentOS 7.

* Use zlib's "fossil" URL as the one true URL

Everything seems to be available at zlib's "fossil" URL, so just use
it as the one and only url.

(and fix a flake8 complaint about a comment)
2017-01-04 11:43:10 -08:00
Cyrus Harrison
eaa24b08fd add package for conduit (#2670)
* add package for conduit

* try to fix main conduit docstring

* use join_path instead of pjoin

* address a few requests in pr #2670

change name of 'github-master' to 'master'

change 'docs' variant to 'doc', set default to False

remove explicit +shared variant spec for silo and hdf5 deps
(in the conduit +shared case) cases since they default to True

add reference to static rpath issue
(https://github.com/LLNL/spack/issues/2658)

* address pr #2670 requests

add todos and more info on why variants for deps where selected
use python module install python to enable spack activate
use .format instead of %s
2017-01-04 10:20:08 -08:00
Jeffrey Salmond
e57fc3d950 opencoarrays: new version (#2734)
* add version 1.8.0

* remove depends_on('cmake') as it is now unecessary

* remove 'coarrays' as a virtual package
2017-01-04 08:40:55 -08:00
Jean-Paul Pelteret
4ff33d41a7 New package: ccache (#2721) 2017-01-04 08:39:58 -08:00
Elizabeth Fischer
03471469e7 libpng: Upgrade versions to fix vulnerability. (#2723) 2017-01-04 08:32:10 -08:00
George Hartzell
2e24a3a2be zlib@1.2.10 and R do not get along, work around it (#2727)
* zlib@1.2.10 and R do not get along, work around it

R's configure script has trouble with version numbers > 1.2.9.

This works around it by constraining R to 1.2.8.

I'm working with some R folk on getting it fixed going forward.

* Add adamjstewart's change.
2017-01-04 07:51:16 -08:00
Barry Smith
2322deda65 Update to latest zlib version, server no longer provides older version (#2720)
* Update to latest zlib version, server no longer provides older version

Funded-by: IDEAS
Project: IDEAS/xSDK

* Add alternative URL for previous release of zlib
2017-01-03 13:52:14 -08:00
Todd Gamblin
d32d5e45fb Fix issues when a package provides the same vdep twice. (#2710)
* Fix issues when a package provides the same vdep twice.

- provides() now adds to a set of provided vdeps instead of a single one.

* flake8
2017-01-02 18:40:57 -08:00
Adam J. Stewart
040f8a7176 Add latest version of gmp (#2695) 2016-12-30 22:53:54 -08:00
Todd Gamblin
972a277956 Fix Python issue with build failures; Add test case for build failures. (#2687) 2016-12-30 11:37:50 -08:00
Todd Gamblin
5fbab1f4b5 Concretize preserves deptypes (#2681)
Concretization preserves deptypes
2016-12-29 14:43:59 -08:00
Massimiliano Culpo
17b13b161b Directive inheritance: laziness for the win (#2623)
* inheritance of directives: using meta-classes to inject attributes coming from directives into packages + lazy directives

* _dep_types -> dependency_types
* using a meta-class to inject directives into packages
* directives are lazy

fixes #2466

* directives.py: allows for multiple inheritance. Added blank lines as suggested by @tgamblin

* directives.py: added a test for simple inheritance of directives

* Minor improvement requested by @tgamblin

CMakePackage: importing names from spack.directives
directives: wrap __new__ to respect pep8

* Refactoring requested by @tgamblin

directives: removed global variables in favor of class variables. Simplified the interface for directives (they return a callable on a package or a list of them).
2016-12-28 12:37:02 -08:00
Thierry
857dac88c8 init yorick package (#2635)
* init yorick package

* attempt at picking up SPACK's compiler choice, todo ~X variant.

* sphinx docstring error ?

* version# tarball, ~X default, docstring fix

* sphinx docstring fix(?)
2016-12-28 10:08:02 -08:00
George Hartzell
18c10f2bad Cleanup post luafilesystem version de-underscoring (#2683)
The upstream luafilesystem tarball/version had a wayward/inconsistent
underscore in their more recent version tag.  The played badly with
our package fetching machinery (due to recent changes?).

Upstream cleaned up their bit which required some touchups here.

- updated the url
- updated the version (digest)
- updated the format statement for the path to the rockspec.
2016-12-27 11:49:53 -08:00
Mayeul d'Avezac
81c1404b9c Adds catch, cppunit, spdlog, tinyxml(1 and 2), google benchmark (#2627)
* Adds catch, cppunit, spdlog, tinyxml(1 and 2), google benchmark

Tinyxml comes in two flavors, 1 and 2. Each comes in several
versions... So they cannot be easily united into a single package.

* Use CMakePackage and friends, add copyright

Also eleminate debug/release variants, since it no longuer fits in the
CMakePackage format.

* Remove unnecessary url

* spdlog now has tagged releases

* Remove unnecessary url argument

* Fewer quotes in cmake args, because magic

* Incorrect base class for tinyxml
2016-12-27 00:32:29 -08:00
Michael Kuhn
baaa613e44 Update wx to 3.1.0 (#2641) 2016-12-27 00:18:26 -08:00
Adam J. Stewart
29bac34c1d Ensure that every file in Spack has a license (#2659)
* Ensure that every package has a license

Also fixes URLs with http://http:// doubled.

This is a continuation of #2656.

* Add license to every file in Spack

* Make sure Todd is the author of all packages

* Fix flake8 tests

* Don't license external Sphinx docs

* Don't display licenses in tutorial example packages

Also fixes typos and converts command-line examples
from tcsh to bash, which is more common
2016-12-27 00:17:12 -08:00
Matthew Scott Krafczyk
3e92ffde7d Update py-cython with new pypi.io url and new version (#2650) 2016-12-25 19:48:11 -08:00
Bruno Turcksin
e16908b16b Add 64 bit variant to dealii. (#2654) 2016-12-25 18:55:14 -08:00
Adam J. Stewart
b240fdb2b9 Add latest version of Python 2 (#2668) 2016-12-25 18:53:16 -08:00
Michael Kuhn
33592d0142 Update gcc to 6.3.0 (#2669) 2016-12-25 18:52:58 -08:00
George Hartzell
041f96b349 Update the texlive distro digest. (#2679)
sigh.
2016-12-25 12:37:03 -08:00
Massimiliano Culpo
8fe5fb7988 go: fixed GOROOT_BOOTSTRAP without workarounds (#2671) 2016-12-25 12:33:57 -08:00
Michael Kuhn
e340f275b8 Update cairo to 1.14.8, gtkplus to 2.24.31 and pango to 1.40.3 (#2642) 2016-12-21 15:03:28 -08:00
Kim Serradell
70a4c4e105 Bug fontconfig (#2652)
* Added uuid: OSSP uuid is a ISO-C:1999 application programming interface

* Fixed install error in cmor package

* Added uuid: OSSP uuid is a ISO-C:1999 application programming interface

* Fixed install error in cmor package

* Modifiying fontconfig file to allow install in OpenSuse 13.2

* Adding pkg-config dependency to freetype and libxml2

* Removed first possible solution. With @adamjstewart selecting the one adding pkg-config to dependencies
2016-12-21 14:27:15 -08:00
Federico Padua
60dc751225 Fix homepage for the package libspatialindex (#2656)
Small fix for the homepage of the package libspatialindex.
2016-12-21 14:23:32 -08:00
Michael Kuhn
3ce3165ae6 Update gdal to 2.1.2 (#2643) 2016-12-19 17:06:57 -08:00
Adam J. Stewart
b3ba45afa9 Various improvements to H5hut (#2636) 2016-12-19 17:06:14 -08:00
Andrey Prokopenko
d306893d83 moab: changed trilinos dependency to zoltan, and added fortran variant (#2582)
Trilinos dependency is very heavy, the zoltan one is light. I'm not sure
if there is a situation where one needs the former.
2016-12-19 14:41:09 -08:00
Adam J. Stewart
d24186ea84 Update PnetCDF to AutotoolsPackage (#2637) 2016-12-19 14:26:47 -08:00
George Hartzell
d8efeabf77 Update digest for vim@8.0 tarball. (#2600)
* Update digest for vim@8.0 tarball.

The digest appears to have changed.

The new digest value matches the value in their
[MD5SUMS](ftp://ftp.vim.org/pub/vim/unix/MD5SUMS)
file.

* Change ftp.vim.org -> github.com/vim/vim/archive

Vim seems to do weekly releases, but the name of the tarball on
ftp.vim.org doesn't change so we have to regularly play 'update the
digest' (aka Internet whack-a-mole).

This commit changes the url so that we are now downloading particular
versions from the Vim project's github archive.

I didn't walk back through of time to get all of the versions that
used to be explicit.  I grabbed the final `7.4` and the current `8.0`
releases.  If people need more we can add them.
2016-12-19 14:26:16 -08:00