Michael Kuhn
6b0c775448
clang/llvm: fix version detection ( #19978 )
...
This PR fixes two problems with clang/llvm's version detection. clang's
version output looks like this:
```
clang version 11.0.0
Target: x86_64-unknown-linux-gnu
```
This caused clang's version to be misdetected as:
```
clang@11.0.0
Target:
```
This resulted in errors when trying to actually use it as a compiler.
When using `spack external find`, we couldn't determine the compiler
version, resulting in errors like this:
```
==> Warning: "llvm@11.0.0+clang+lld+lldb" has been detected on the system but will not be added to packages.yaml [reason=c compiler not found for llvm@11.0.0+clang+lld+lldb]
```
Changing the regex to only match until the end of the line fixes these
problems.
Fixes : #19473
2021-09-21 16:58:41 -07:00
Adam J. Stewart
9120856c01
Fix fetching for Python 3.9.6 ( #24686 )
...
When using Python 3.9.6, Spack is no longer able to fetch anything. Commands like `spack fetch` and `spack install` all break.
Python 3.9.6 includes a [new change](https://github.com/python/cpython/pull/25853/files#diff-b3712475a413ec972134c0260c8f1eb1deefb66184f740ef00c37b4487ef873eR462 ) that means that `scheme` must be a string, it cannot be None. The solution is to use an empty string like the method default.
Fixes #24644 . Also see https://github.com/Homebrew/homebrew-core/pull/80175 where this issue was discovered by CI. Thanks @branchvincent for reporting such a serious issue before any actual users encountered it!
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2021-09-21 16:58:41 -07:00
Edward Hartnett
90d953d3f6
w3emc: add NOAA software maintainers ( #26110 )
2021-09-21 17:54:19 -06:00
Tiziano Müller
d34b2638c7
boost: fix for @1.77.0%intel ( #25965 )
...
Add patch for build script from boost repo.
2021-09-21 16:07:25 -07:00
bernhardkaindl
979c355c99
spack/build_environment.py: Clean MAKEFLAGS, DISPLAY and TERM ( #26092 )
...
clean_environment(): Unset three more environment variables:
MAKEFLAGS: Affects make, can eg indirectly inhibit enabling parallel build
DISPLAY: Tests of GUI widget libraries might try to connect to an X server
TERM: Could make testsuites attempt to color their output
2021-09-22 00:23:10 +02:00
Edward Hartnett
92f199d57b
added NOAA software maintainers to the maintainers list ( #26102 )
2021-09-21 16:16:49 -06:00
Edward Hartnett
fd716ce0c5
sfcio: add NOAA software maintainers ( #26108 )
...
* added NOAA software maintainers to maintainer list
* added comment about NCEPLIBS project
2021-09-21 15:28:37 -06:00
Edward Hartnett
d865caa7f7
ip2: add NOAA software maintainers and deprecation note ( #26107 )
...
* added NOAA software maintainers to maintainer list, added comment about library being deprecated
* deleted trailing whitespace
2021-09-21 14:49:13 -06:00
bernhardkaindl
981551b47f
libtool: fix running the unit-tests with spack install --test root ( #25707 )
...
Besides adding autoconf and automake as needed for tests of 2.4.6,
skip Fortran test cases when Fortran compilers are not provided.
2021-09-21 14:18:29 -06:00
Tamara Dahlgren
c3cb863b82
Feature: Add deprecated versions section to spack info output ( #25972 )
2021-09-21 11:49:36 -07:00
AMD Toolchain Support
8de77bb304
Fix for - Installation issue: amdlibflame #25878 ( #25987 )
...
* Fix for - Installation issue: amdlibflame #25878
* Updated with python+pythoncmd - Symlink 'python3' executable to 'python'
2021-09-21 11:15:23 -07:00
Edward Hartnett
a8977f828e
w3nco: add NOAA software maintainers ( #26111 )
2021-09-21 12:08:43 -06:00
Jonas Thies
6c487f4c6d
packages/phist new version 1.9.5 ( #26114 )
2021-09-21 11:57:22 -06:00
Edward Hartnett
24500d4115
added noaa software maintainers to maintainer list ( #26103 )
2021-09-21 09:58:53 -07:00
iarspider
2741037c69
Fix FORM recipe ( #26104 )
2021-09-21 09:57:40 -07:00
Edward Hartnett
d278837316
sigio: add NOAA software maintainers ( #26109 )
2021-09-21 10:39:05 -06:00
bernhardkaindl
22cfc19bcb
ddd,debuild,flux-sched: add missing dependencies ( #26090 )
2021-09-21 18:08:11 +02:00
Melven Roehrig-Zoellner
c24413a530
petsc: fix for enabling openmp ( #25942 )
...
* petsc: fix for enabling openmp
* petsc: shorten comment (style guidelines)
* petsc: move flag to make code more clear
2021-09-21 07:13:35 -06:00
natshineman
544b3f447d
mvapich2-gdr: add v2.3.6 ( #26076 )
...
Co-authored-by: Nick Contini <contini.26@buckeyemail.osu.edu>
2021-09-21 06:19:56 -06:00
Gregory Lee
05ca19d9d7
fgfs: fix missing autotools depends_on ( #26005 )
...
* added build deps for fgfs
* added build deps when building master branch
2021-09-21 07:40:59 -04:00
Harmen Stoppels
a326713826
py-abcpy: new package ( #25713 )
2021-09-21 13:10:16 +02:00
bernhardkaindl
1b95c97bb3
ccfits: add v2.6 ( #26089 )
...
ccfits@2.5 doesn't compile on Ubuntu 18.04: Update to version 2.6.
2021-09-21 04:43:48 -06:00
bernhardkaindl
c6a33c28de
Fix deps of diffmark,faiss,fgsl,fipcheck,nbdkit,ncbi-magicblast,xcb-util-cursor ( #26091 )
...
Fix missing type='build' deps for cpio, m4, pkg-config and python in
diffmark, faiss, fgsl, fipcheck, nbdkit, ncbi-magicblast and xcb-util-cursor
2021-09-21 04:16:43 -06:00
Harmen Stoppels
58663692a4
Rename 'variant_name' to 'variant' and document it in autotools build system ( #26064 )
2021-09-21 11:27:41 +02:00
Christoph Junghans
45ba4d94bd
votca-* packages: add version 2021.2 ( #26058 )
2021-09-20 16:14:19 -07:00
Adam J. Stewart
3e3b7b1394
New package: py-torchgeo ( #26059 )
2021-09-20 16:12:55 -07:00
Jordan Ogas
d0fd9e6d5f
charliecloud package: add version 0.25 ( #26073 )
2021-09-20 16:08:41 -07:00
adityakavalur
88880c5369
Include newer versions of UCX ( #26072 )
2021-09-20 23:41:26 +02:00
Danny McClanahan
aa7e354a3a
patch serf and scons to use #!/usr/bin/env python3 ( #26062 )
2021-09-20 22:12:30 +02:00
iarspider
f3d2f62468
Add variants to FORM recipe ( #25963 )
2021-09-20 13:53:54 -06:00
Edward Hartnett
65f285831e
added NOAA maintainers to ip package ( #26055 )
2021-09-20 11:36:03 -06:00
Olivier Cessenat
0197b364a2
mfem and petsc: alter hypre dependencies ( #25902 )
...
Hypre latest version 2.22.1 breaks MFEM and PETSc.
2021-09-20 09:51:29 -07:00
Edward Hartnett
96eefea9a3
added NOAA software team to maintainers list ( #26056 )
2021-09-20 09:01:53 -06:00
Olivier Cessenat
1ea58e0cb9
p7zip: resolve gcc 10 conflict ( #25676 )
...
Fix credit: Eric Brugger
2021-09-20 07:43:07 -04:00
Tamara Dahlgren
c6f9e9baf6
strumpack: Update stand-alone test to use stage directory ( #25751 )
2021-09-20 07:36:58 -04:00
kjrstory
430caaf5f6
paraview: patch for version 5.9.1 with gcc 11.1.0 ( #25887 )
...
* paraview: patch for version 5.9.1 with gcc 11.1.0
* Fix : blank line contains whitespace
2021-09-20 07:31:54 -04:00
Robert Underwood
6476e0cf02
gdb: new version v11.1 ( #25920 )
2021-09-20 07:30:37 -04:00
Jen Herting
acd4186a88
New packages: py-imgaug ( #25894 )
...
* updates from sid
* [py-imgaug] url -> pypi
* [py-imgaug] added version 0.4.0 and fixed up dependencies
* [py-imgaug] updated copyright
Co-authored-by: Andrew Elble <aweits@rit.edu>
2021-09-20 07:29:43 -04:00
iarspider
ca8d16c9d1
Allow setting variant name in AutotoolsPackage._activate_or_not ( #26054 )
2021-09-20 10:54:24 +02:00
jacorvar
d20fa421ca
Fix R version ( #26061 )
...
R version should be `3.0.0` instead of `3.00`.
2021-09-20 10:47:40 +02:00
Edward Hartnett
8fceaf4a33
added NOAA software team to maintainers list ( #26057 )
2021-09-19 19:02:02 -06:00
Vanessasaurus
534bad0ff7
updating OmegaH to 9.34.1 ( #26015 )
2021-09-19 08:55:54 -06:00
Todd Gamblin
4f8b643404
Create SECURITY.md
2021-09-19 06:43:14 -07:00
Vanessasaurus
c2f42a6f09
updating kokkos to 3.4.01 ( #26013 )
2021-09-19 06:10:55 -06:00
Vanessasaurus
148c7aeb06
updating singularity to 3.8.3 ( #26020 )
...
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-09-19 04:20:15 -06:00
jacorvar
4f79a83dd1
Fix R version ( #26047 )
...
R version should be `3.0.0`, in contrast to `3.00`.
2021-09-19 12:14:14 +02:00
Alec Scott
2d4d51eb5e
Add v1.6.0 to Benchmark ( #25996 )
2021-09-18 20:59:02 -06:00
Cameron Smith
b14d6d217e
omegah: add version 9.34.1 ( #25828 )
2021-09-18 19:58:44 -06:00
Alec Scott
5b400a69b7
Add v0.935 to Angsd ( #25995 )
2021-09-18 18:46:55 -06:00
Adam J. Stewart
c0839b14d5
Python: use platform-specific site packages dir ( #25998 )
2021-09-19 00:37:50 +00:00
