Commit graph

12927 commits

Author SHA1 Message Date
Justin Stanley
993745b919 redundans: add 0.14a (#10006)
Also update install to use globbing
2019-01-30 18:55:59 -06:00
Samuel Thibault
9bfcbcc155 New package: simgrid (#10076) 2019-01-30 18:39:59 -06:00
Cameron Smith
9d7f215e47 zoltan: detect metis int64 variant (#10051)
Configure zoltan depending on metis int64 support
2019-01-30 15:19:38 -06:00
dorier
477d3fb479 Package py-keras: add new versions and dependencies (#10353)
Add new versions for py-keras. Versions of py-keras at or after
2.2.0 require keras-processing and keras-applications packages.
Add these packages to Spack and add dependencies to the py-keras
package.
2019-01-30 14:32:37 -06:00
Jimmy Tang
47887499bf cudnn package: add version 7.2 (#10481) 2019-01-30 13:44:24 -06:00
sknigh
d4fbaa054f Update opa-psm2 package (#10344)
* Add version 11.2.68
* Add variant to disable AVX2 for older hardware
* Change the makefile so libraries and includes are not placed
  under $PREFIX/usr
* Updated URL and homepage
2019-01-30 13:38:48 -06:00
Justin Stanley
a3926620ee r-preprocesscore: add version 1.44.0 (#10389) 2019-01-30 13:30:06 -06:00
Justin Stanley
65429026af r-impute: add version 1.56.0 (#10390) 2019-01-30 13:29:09 -06:00
Abhinav Bhatele
5c99716160 codes package: add version 1.1.0 (#10414) 2019-01-30 13:27:56 -06:00
Justin Stanley
25d2ccfcc5 r-runit: new package at 0.4.32 (#10416) 2019-01-30 13:26:34 -06:00
Justin Stanley
2a28e6e6bb r-bibtex: new package at 0.4.2 (#10417) 2019-01-30 13:25:43 -06:00
Justin Stanley
9efeff6b1f r-rngtools: add 1.3.1 (#10418) 2019-01-30 13:25:10 -06:00
Abhinav Bhatele
16819a5b18 ROSS package: update homepage and git url (#10429) 2019-01-30 13:24:14 -06:00
Adam J. Stewart
f011c9976f Add JDK 11.0.2_9 (#10413)
Also add 11.0.1_13; remove 11.0.1, which is no longer available for
download.
2019-01-30 13:20:30 -06:00
Michael Kuhn
e338f2c2c1 ncl package: require cairo with pdf support (#10465)
Needed after #10135
2019-01-30 13:10:08 -06:00
Michael Kuhn
5ada4d9956 gtkplus: add gettext dependency (#10464) 2019-01-30 13:08:43 -06:00
G-Ragghianti
b114ec4e77 New package: lm-sensors (#10443) 2019-01-30 13:04:52 -06:00
Matthias Diener
28de435584 go: add version 1.11.5 (#10451) 2019-01-30 12:57:45 -06:00
Satish Balay
d8e9d7acbd py-petsc4py: add version 3.10.1 (#10457)
Also update dependency version ranges
2019-01-30 12:54:45 -06:00
Christoph Junghans
ccb3face64 py-espresso package: add version 4.0.1 (#10469) 2019-01-30 12:53:24 -06:00
Sajid Ali
a67995d66a py-dask package: add version 1.1.0 (#10475) 2019-01-30 12:51:56 -06:00
Sajid Ali
b34e2b8973 neovim package: add version 0.3.4 (#10472) 2019-01-30 12:51:17 -06:00
Matthias Maiterth
f50e91776d geopm package: new versions, dependency updates (#10480)
Added versions 1.0.0-rc1, 0.6.1, 0.6.0, 0.5.1

hwloc dependency was removed after 0.5.1, so the related configure
option is not specified after 0.5.1

Require py-matplotlib dependency version 2.2.3 (version was not
specified before)
2019-01-30 12:50:38 -06:00
Daniel Topa
1d4d2cff50 Add Open MPI 2.1.6 (#10478) 2019-01-30 12:45:46 -06:00
Sajid Ali
5992f508d3 py-numexpr package: add version 2.6.9 (#10477) 2019-01-30 12:45:19 -06:00
Sajid Ali
e0387ab1a1 modified: var/spack/repos/builtin/packages/libx11/package.py (#10473) 2019-01-30 12:44:03 -06:00
Sajid Ali
627ef75bb8 py-pyfftw package: add version 0.11.1 (#10474) 2019-01-30 12:43:23 -06:00
George Hartzell
f878c0cb5b Add configparser v3.5.1, fixes backports namespace (#10433)
Fixes #8343 #4154 #7370
Closes #4155 

All but one of the backports packages were using "pkgutil-style"
namespacing, but configparser was using "pkg_resource-style".
A namespace needs to be one style or another. This adds a new
configparser version which switches to using the pkgutil-style
namespace approach.

With this update, one can now install flake8 with Spack and use
it by loading modules.
2019-01-29 17:58:56 -06:00
Peter Scheibel
b2c2cbadcd
debug output includes modulecmd output (#9476)
Debug output now includes the output of modulecmd executions. Only
output module content when a failure occurs; always report when a
module is loaded/unloaded.
2019-01-29 17:41:15 -06:00
Chuck Atkins
b7c31cb561 rhash: Fix broken RPATH info on darwin
The PREFIX variable in the makefiles is directly used to construct the
install name on the library metadata on darwin.  If not passed, the
default /usr/local is used and the resulting librhash.dylib contains
usage informaiton of /usr/local/lib/librhash.0.dylib.  This adds the
PREFIX= variable directly to the make command so the resulting usage
metadata contains the correct valid library path.
2019-01-29 16:31:15 -06:00
Stephen Herbein
67a1e56e4d add flux-core@0.11.0 and flux-sched@0.7.0 (#10447)
* flux-core: add v0.11.0 and updated dependencies

libuuid hasn't been a direct dependency of flux-core since 2015 (well
before any of the versions listed in the package).

The yaml-cpp dependency moved to flux-sched when we moved the jobpsec
library from core to sched.

Some python3 incompatibilities were found in 0.11.0, so bump the python3
support back a version.

* flux-sched: add v0.7.0 and make boost dependency more precise
2019-01-28 21:20:01 -07:00
Chuck Atkins
6535eae5c7 llvm: various updates (#10427)
* llvm: Bump version to 7.0.1

* llvm: Added perl-data-dumper build dependency for openmp

* llvm: Enable exception handling and RTTI

Useful to have turned on in general with RTTI but also necessary
to workaround some lldb stability issues with some versions of
libstdc++.
2019-01-29 00:32:30 +01:00
Ralph Castain
3b1fb7d9ff Update the PMIx package (#10442)
* Update the PMIx package

- Add latest releases to the list.
- Add dependency on hwloc for versions >= 3.0
- Flag preferred versions for libevent and hwloc
- Improve the description
- Point the project URL to the correct site

Signed-off-by: Ralph Castain <rhc@pmix.org>

* Only install the hwloc dependency for versions >= 3.0.0

Thanks to @ax3l for the suggestion

Signed-off-by: Ralph Castain <rhc@pmix.org>

* Add myself as a listed maintainer

Signed-off-by: Ralph Castain <rhc@pmix.org>
2019-01-26 21:25:18 +01:00
Cameron Smith
4e14752dd6 add variant for a debug build (#10409) 2019-01-26 18:42:24 +01:00
Nichols A. Romero
4ab89f4de1 QMCPACK Update - Jan 2019 (#10252)
* Add warnings for existing conflicts. New versions of QMCPACK require a compiler with C++14 support.

* QMCPACK now requires a newer release of CMake.

* Switch QMCPACK to using FFTW-api provider.

* Relax dependencies on QMCPACK +da variant.

* Add QMCPACK 3.6.0 release.

* QMCPACK compiler-CUDA conflicts.

* QMCPACK fix typo in expressing conflict.

* Conditional needed since these variables are only used when FFTW is a dependency to QMCPACK.

* QMCPACK QE variant dependency was underspecified. Must include MPI as a hard dependency on QE.

* Update QMCPACK dependencies for HDF5, CMake and Boost.

* QMCPACK clean-up, more consistent use of spec vs. self.spec.

* Add support for collective I/O variant of QMCPACK.

* Update QMCPACK conflicts for QE and PHDF5 variants.

* Use built-in install method for QMCPACK starting with 3.6.0

* QMCPACK compiler C++14 conflicts were off by one version.

* QMCPACK package needs to setup_environment method.

* In support of PR#10252, get rid of slashes in string.

* Migrate these to the CUDA package and make a seperate PR.

* In support of PR#10252, get rid of join_path for nexus.

* In support of PR#10252, work around concretizer limitation.

* In support of PR#10252, convert to conditionals to if-else clauses for compactness.

* In support of PR#10252, get rid of extra space and new line in warning messages.
2019-01-26 10:13:51 -06:00
Abhinav Bhatele
a307822fd9 laghos: update version (#10420) 2019-01-26 16:29:32 +01:00
Satish Balay
d071c6d341 petsc: configure works with python3 in current petsc@develop - and will work in future releases [3.11+] (#10380) 2019-01-26 16:28:20 +01:00
Matthias Diener
f299507fa9 diffutils: add version 3.7 (#10406) 2019-01-26 16:26:47 +01:00
Matthias Diener
2826d37a45 rust: add version 1.32.0 (#10407) 2019-01-26 16:26:16 +01:00
Ricardo Silva
3fc8203b93 bcftools: do not use bundled htslib (#10445)
* if the path to htslib is not specified the bundled one is built instead
* additionally this fixes the build with the intel compiler
2019-01-26 16:21:04 +01:00
Chuck Atkins
e867319ac3 perl-data-dumper: New package (#10425)
This package is added to satisfy a build time dependency for llvm-openmp
2019-01-26 16:16:03 +01:00
Chuck Atkins
76c757de22 libuv: Bump version to 1.25.0 (#10423) 2019-01-26 16:11:45 +01:00
Chuck Atkins
3266c69352 cmake: Use system libs by default (#10424)
This also fixes the libuv version dependency for 3.11+
2019-01-26 16:11:32 +01:00
wspear
68eb2a1418 Added the py-send2trash package as a pre-req for py-jupyterhub (#10441) 2019-01-26 16:10:02 +01:00
Piotr Luszczek
b94c8c2d53 magma: add version 2.5.0 (#10438) 2019-01-26 16:03:05 +01:00
Levi Baber
248452df4f capstone: new package (#10449) 2019-01-26 15:52:39 +01:00
Peter Scheibel
5abf29c971
Environments: fix bug for install of external packages (#10437)
"spack install" will install all packages added to the current
environment. When this included external packages, the environment
update would fail because it would attempt to copy log files that
were only generated if Spack handled the install itself. This skips
that step for external packages.
2019-01-24 21:29:21 -06:00
Greg Becker
98e0b5b0db
Allow spack install --overwrite for nonexistent or multiple packages (#9201)
* Allow overwrite nonexistent and multiple packages

initial implementation
give one prompt to users instead of a prompt per spec
testing

* flake

* bugfix: install overwrite check each spec against installed

* python3 compliance for filter/map
2019-01-24 12:10:32 -08:00
Omar Padron
7d64994cbd fix issue where docker images were being pushed without login (#10379) 2019-01-24 10:08:38 -08:00
sameershende
7d12ff6e16 Update ecp st tau pdt (#8192)
* Updated MPI and TAU versions in the TAU package
* Updated PDT versions
* Added support for Python (+python), default to `False`
* Cleaned up binutils, python, mpi usage.
* Updated binutils install to add additional header files to the include/extra directory.
* Resolving review problems with TAU and binutils packages.
  The binutils package was updated to include support for installing
  the ELF headers as a +headers variant.  The TAU package was updated
  to use all known Spack dependencies.
2019-01-23 20:40:58 -08:00