Commit graph

22604 commits

Author SHA1 Message Date
takanori-ihara
26d2356ad4
genesis: New package. (#21183)
* genesis: New package.

* fujitsu-ssl2: fix unit test error

* genesis: Fix for comments and add test method

* genesis: Fix for comments

* genesis: Fix for comments
2021-02-22 04:06:56 +00:00
Tomoki, Karatsu
2d1fbddebe
py-dask-glm: Add new package. (#21828) 2021-02-22 01:03:05 +00:00
Tomoki, Karatsu
e66b1d4596
py-nbconvert: add function 'setup_dependent_build_environment'. (#21827)
* py-nbconvert: add function 'setup_dependent_build_environment'.

* add 'setup_dependent_run_environment'

* add 'setup_run_environment'.
2021-02-21 11:13:23 -06:00
Mosè Giordano
f4e4dba4ef
libblastrampoline: new package (#21825)
* libblastrampoline: new package

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-02-20 23:14:16 +00:00
iarspider
0cc5f629a6
Add checksum for form 4.1 (#21808) 2021-02-20 15:00:29 -06:00
downloadico
1fc4213bd5
masurca: add version 4.0.1 (#21816)
Now using the install.sh script to install into the prefix.
2021-02-20 14:54:39 -06:00
Howard Pritchard
4bd8cd1916
openmpi: add variant for using internal hwloc (#19109)
It turns out there are certain cases where having Open MPI use an external hwloc messes up other
applications that also rely on hwloc, but a different version.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2021-02-20 09:52:34 +01:00
Axel Huebl
aa01123bba
VTK-m: fixed inconsistencies in directives (#21820)
* VTK-m: No `pic` variant

A leftover conflict between `shared` and `pic` variants, the
latter is not part of the package anymore, leads to a solver
error with clingo.

This removes the outdated conflict section.

* VTK-m: Kokkos AMD GPU variant changed
2021-02-20 09:47:55 +01:00
Patrick Schratz
f65e6ae4e6
update R to v4.0.4 (#21815) 2021-02-19 19:12:30 -06:00
Andrew W Elble
e49383cdc1
py-unshare: new package (#21817) 2021-02-19 14:59:56 -06:00
Tamara Dahlgren
8dd2d740b1 Update CHANGELOG and release version 2021-02-19 11:06:33 -08:00
Tamara Dahlgren
d0798160cf Resolve (post-cherry-picking) flake8 errors 2021-02-19 11:05:53 -08:00
Olivier Cessenat
29d1e1ba87
libqrencode: new package at v4.1.1 (#21801) 2021-02-19 15:49:45 +00:00
iarspider
550459ad41
njet: add v2.0.0 (#21809) 2021-02-19 16:37:50 +01:00
iarspider
0880d2572d
Add new variants to tauola (hepmc3, lhapdf) (#21802) 2021-02-19 16:29:17 +01:00
Olivier Cessenat
e8c2a1085a
proj: adding recent DATA and recent release up to 7.2.1 (#21804) 2021-02-19 08:57:35 -06:00
iarspider
256f6fedd9
Add checksum for version 0.29.20 (#21806) 2021-02-19 08:56:34 -06:00
Sergey Kosukhin
2ca24a208a
cdo: switch to fftw-api (#21803) 2021-02-19 14:36:38 +00:00
iarspider
95fd9ff6c1
Add photos 3.64; add hepmc2/hepmc3 variants (#21795) 2021-02-19 14:55:04 +01:00
Tom Payerle
f5e65e94e6
documentation: correct precedence of included configs in environment spack.yaml (#18663)
fixes #17993
2021-02-19 13:31:47 +00:00
iarspider
3d2b08a971
py-parso: add v0.8.1 (#21798) 2021-02-19 14:14:01 +01:00
Filippo Spiga
048adfdc1b
Adding CUDA SDK 11.2.1 (#21800) 2021-02-19 12:11:51 +00:00
Xavier Delaruelle
36f0154130
environment-modules: add v4.7.0 (#21799) 2021-02-19 13:03:46 +01:00
BerengerBerthoul
201000daca
Update scotch package for int32 (#21728) 2021-02-19 12:14:36 +01:00
Bryan Herman
2019d1deb7
CGNS: set parallel build to False to fix cp error (#21766) 2021-02-19 12:11:07 +01:00
iarspider
802ac63991
MCUtils: migration to gitlab (#21771) 2021-02-19 11:35:27 +01:00
Filippo Spiga
eff59ba9d6
nvhpc: add v21.2 (#21796) 2021-02-19 10:31:09 +00:00
holrock
e1c5952130
ruby: remove unwanted dependencies (#21797)
ruby/tk is removed from stdlib at ruby2.4.0
2021-02-19 10:28:22 +00:00
iarspider
554e736a14
gperftools: add v2.8.1 (#21794) 2021-02-19 11:09:46 +01:00
Greg Becker
de5a396ecb
bugfix: add build deps to 'full hash' (#21735)
The "full hash" was only including the link/run deps, but it should include build deps as well.
2021-02-19 00:51:00 -08:00
iarspider
14897df02b
davix: add v0.7.6 (#21773) 2021-02-19 09:37:56 +01:00
Brian Van Essen
23e22ae623
Updates to the LBANN software stack (#21733)
Set the minimun C++ standard for LBANN, Hydrogen, and DiHydrogen to
C++17.  The minumim C++ standard for Aluminum is C++14.  Add new
versions for Aluminum, Hydrogen, and DiHydrogen.  Added support for
high performance linkers in LBANN recipe (gold and lld).  Added
variants to LBANN for enabling embedded Python support independently
from the Python front end.
2021-02-19 09:32:17 +01:00
h-denpo
e772291df1
blast2go: conflicts for platforms other than x86_64 (#21693) 2021-02-19 08:29:33 +00:00
Tomoyasu Nojiri
310e82c863
hdf-eos5: fix hdf5 dependency (#21789) 2021-02-19 09:16:13 +01:00
darmac
901aefc6a5
librelp: add test dependency on valgrind (#21752) 2021-02-19 07:47:50 +01:00
darmac
43cf529594
py-sip: change url because some old package is missing (#21402) 2021-02-18 19:52:00 -06:00
Scott Wittenburg
6b509a95da
Pipelines: Move PR testing stacks (currently only E4S) into spack (#21714) 2021-02-18 18:50:57 -07:00
Severin Strobl
0da2b82df2
Fixed conditional in match_flag for fish env (#21679)
An attempt to fix the conditional was made in 5a771bc8ad, yet this broke
the conditional completely.
2021-02-18 23:29:23 +00:00
emai-imcs
70b81dc48d
py-fenics-instant: new package for legacy fenics 2016 and 2017 versions (#21775)
* py-fenics-instant: new package for legacy fenics 2016 and 2017 versions

* Update var/spack/repos/builtin/packages/py-fenics-instant/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-02-18 23:02:39 +00:00
Tom Payerle
362a4bb8b9
Fix template for Rpackage in spack create command (#21776)
The signature for configure_args in the template for new
RPackage packages was incorrect (different than what is
defined and used in lib/spack/spack/build_systems/r.py)

See issue #21774
2021-02-18 22:40:21 +00:00
Massimiliano Culpo
f2e3edf6db
Testing: use spack.store.use_store everywhere (#21656)
Keep spack.store.store and spack.store.db consistent in unit tests

* Remove calls to monkeypatch for spack.store.store and spack.store.db:
  tests that used these called one or the other, which lead to
  inconsistencies (the tests passed regardless but were fragile as a
  result)
* Fixtures making use of monkeypatch with mock_store now use the
  updated use_store function, which sets store.store and store.db
  consistently
* subprocess_context.TestState now transfers the serializes and
  restores spack.store.store (without the monkeypatch changes this
  would have created inconsistencies)
2021-02-18 13:22:49 -08:00
Satish Balay
cbcf8d208b
xsdk: fix @develop build (#21749)
- petsc4py: update @develop build from petsc repo
- omega-h: develop branch is now main branch
2021-02-18 14:41:36 -06:00
Seth R. Johnson
2d917e17d9
flibcpp: Activate SWIG rebuild when +swig (#21767)
This option allows downstream packages to build with SWIG and the flibcpp-exported SWIG interfaces.
2021-02-18 19:12:18 +00:00
Tom Payerle
b448b639e6
Documentation fix: build_system configure_args for #21760 (#21761)
Corrects the signature for configure_args (and therefore configure_vars)
in documentation on RPackage build system to match the code
See issue #21760
2021-02-18 18:08:48 +00:00
Gregory Lee
3364e5550f
patches to apply to gdbm and m4 when using oneapi compiler (#21740) 2021-02-18 09:39:20 -08:00
Sebastian Schmitt
8e3ac8577f
Arbor: rely on spack's compiler wrapper to set architecture (#21758) 2021-02-18 15:02:09 +00:00
ketsubouchi
432625ca26
openrasmol: new package (#21530) 2021-02-18 13:09:38 +01:00
Freifrau von Bleifrei
ed1540efa3
sgpp: use spack compiler instead of default gcc (#21756)
Co-authored-by: Theresa Pollinger <pollinta@ipvs.uni-stuttgart.de>
2021-02-18 11:28:42 +00:00
Mikael Simberg
651c6ea350
hpx: add v1.6.0 (#21757) 2021-02-18 10:42:19 +00:00
Sergey Kosukhin
3273529936
eccodes: add v2.20.0 (#21703) 2021-02-18 11:20:53 +01:00