Commit graph

24955 commits

Author SHA1 Message Date
Stephen Sachs
79f22423b8
intel compiler: fix link time error with LLVMgold.so (#28731)
The Intel compiler will, at link time, call `ld -plugin LLVMgold.so`, which
expects libraries like `libimfo.so` to be found either in the `LD_LIBRARY_PATH` or
in `LLVMgold.so`s RPATH.

As `LLVMgold.so` already uses RUNPATH, I used that to extend this to the
necessary library locations.

This PR should fix issues:
https://github.com/spack/spack/issues/10308
https://github.com/spack/spack/issues/18606
https://github.com/spack/spack/issues/17100
https://github.com/spack/spack/issues/21237
https://github.com/spack/spack/issues/4261

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-02-15 17:47:29 +00:00
Harmen Stoppels
cebe4fdf1d
Make spack -e [env] spec show environment root specs (#25941) 2022-02-15 09:42:05 -08:00
Anton Kozhevnikov
d61c1f623c
SIRIUS: optionlal dependency on Python (#28711)
* depend on Python only when building the module

* fixes for shared costa libray

* add deprecated=True for old packages
2022-02-15 10:23:37 -07:00
Harmen Stoppels
55996d3ad4
Unalias despacktivate only when alias exists (#28939) 2022-02-15 16:21:19 +01:00
acastanedam
3640c258dc
direnv: fix installation procedure (#28940)
Setting Spack's `$prefix` to `$DESTDIR` and not to `$PREFIX` install the
package in `$prefix/usr/local` and not in `$prefix`, thus when it is
loaded the executable `direnv` in not "seen" by the environment.
2022-02-15 08:17:41 -07:00
Nils Vu
a8d440d3ab
spectre: patch Boost pre v1.67 (#28931) 2022-02-15 15:13:13 +01:00
dlkuehn
7fc9c16f9e
genometools: add v1.6.2 (#28936)
Co-authored-by: las_dkuehn <las_dkuehn@gilman-0107-02.las.iastate.edu>
2022-02-15 15:11:38 +01:00
Wouter Deconinck
6864b28fd8
dd4hep: add v1.20 (#28937)
No major changes to the build system, https://github.com/AIDASoft/DD4hep/compare/v01-19...v01-20
2022-02-15 15:06:43 +01:00
Cody Balos
cf0c9affff
sundials: use make for some of the smoke tests (#28938) 2022-02-15 15:03:58 +01:00
Mark W. Krentel
09a8656f1f
meson: add versions 0.61.2 and 0.60.3 (#28934) 2022-02-15 05:20:34 -07:00
Manuela Kuhn
9f1c6c0c29
py-anyio: add 3.5.0 (#28915)
* py-anyio: add 3.5.0

* Add wheel dependency
2022-02-15 03:38:17 -07:00
Mikael Simberg
fdec3b47cc
apex: add patch to install missing header (#28844)
Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
2022-02-15 01:59:39 -07:00
Daniele Cesarini
c313a72e76
New quantum-espresso maintainer (#28927) 2022-02-15 09:32:46 +01:00
Manuela Kuhn
28caa0225f
py-attrs: add 21.4.0 (#28914) 2022-02-14 22:50:55 -07:00
Manuela Kuhn
30fafa63e0
py-jsonschema: add 4.4.0 (#28919) 2022-02-14 22:50:37 -07:00
Seth R. Johnson
08cad7d0ee
darwin: make sure MACOSX_DEPLOYMENT_TARGET has a minor component (#28926) 2022-02-15 05:50:22 +00:00
luker
9165e3fb86
updated cray-fftw (#28922)
added the latest cray-fftw version, added myself as a maintainer, updated the homepage
2022-02-14 22:14:39 -07:00
Pierre Neyron
d54a5d9dd8
py-pyopencl: fix dependency to py-six (#28916) (#28917) 2022-02-14 19:59:25 -07:00
Sreenivasa Murthy Kolam
76489eb213
replace mesa18 recipe with mesa recipe for the rocm releases (#28491) 2022-02-14 16:29:45 -06:00
ravil-mobile
64dd6378d4
easi: add new package (#28828)
Co-authored-by: ravil <ravil.dorozhinskii@tum.de>
2022-02-14 15:29:32 -07:00
Manuela Kuhn
67ea14098d
py-bids-validator: add 1.8.9 (#28913) 2022-02-14 14:53:29 -07:00
MichaelLaufer
5b80c4ab6c
New package: py-pyfr (#28847)
* Initial support for PyFR

* styling

* fixes

* more syling fixes

* fixes for dependencies

* add min rocblas version
2022-02-14 15:43:18 -06:00
Tom Vander Aa
1377c02e26
intel-oneapi-mpi: set I_MPI_ROOT in setup_dependent_build_environment (#28890)
* setting I_MPI_ROOT is sometimes needed for find_package(MPI) in cmake to work
2022-02-14 13:23:35 -07:00
Thomas Madlener
13013d0291
fastjet add v3.3.4, fjcontrib add v1.045 (#22667) 2022-02-14 13:23:06 -07:00
estewart08
fe35ce1843
AMD rocm-openmp-extras: add v4.5.2 (#28790) 2022-02-14 10:14:44 -07:00
Toyohisa Kameyama
5353032eef
Python: fix build with Fujitsu compiler (#28744) 2022-02-14 08:06:34 -06:00
Olli Lupton
dc57f987a7
py-{mizani,plotnine}: add packages. (#28841)
* py-{mizani,plotnine}: add packages.

* Add missing python dependency.
2022-02-14 03:20:29 -07:00
G-Ragghianti
aa6e725633
magma: move the execution of stand-alone tests to preferred directory (#28895) 2022-02-14 11:19:45 +01:00
John Wohlbier
9649246764
palisade-development: change fppe-logreg variant to point to a stable tag instead of a branch (#28717)
Co-authored-by: John Wohlbier <jgwohlbier@sei.cmu.edu>
2022-02-14 11:18:38 +01:00
Adam J. Stewart
b0658b8b03
py-pandas: add v1.4.1 (#28904) 2022-02-14 11:01:13 +01:00
Adam J. Stewart
e0a0f41ff9
py-mypy: add new versions (#28905) 2022-02-14 11:01:00 +01:00
Seth R. Johnson
3a4ab5f96f
trilinos: disable UVM for 13.2+ (#28879) 2022-02-14 10:54:15 +01:00
Jen Herting
2c56cbd2bc
[py-ctgan] fixed py-torchvision version range (#28892) 2022-02-13 22:26:10 -07:00
Harmen Stoppels
bece9fd823
Bump libtree (#28908) 2022-02-13 15:50:15 -08:00
Seth R. Johnson
97e4b43ddc
go: mark conflict for ancient compilers (#28888) 2022-02-13 14:20:27 -07:00
Adam J. Stewart
cab0e4cb24
py-grpcio: add v1.43.0 (#28784) 2022-02-12 20:13:21 +01:00
Sarah Osborn
8c943261a2
hypre: add v2.24.0 (#28896) 2022-02-12 12:47:55 +01:00
Steve Leak
9f1db4e3a5
cray: add NVIDIA to the list of canonical names (#28246) 2022-02-12 10:45:46 +01:00
Adam Moody
0a25370e78
lwgrp/dtcmp packages: add version 1.0.5 and 1.1.4, respectively(#28817) 2022-02-11 18:52:51 -08:00
Olli Lupton
b840557d64
ffmpeg package: add libx264 variant; fix license variants. (#28808)
Prior to this patch, setting +gpl did not pass --enable-gpl and
did not allow GPL-only codecs to be enabled.
2022-02-11 18:40:35 -08:00
Brian Van Essen
fc7b7cfeab
LBANN SW stack packages: gcc-toolchain and clang support (#28769)
* Added support to LBANN, Hydrogen, DiHydrogen, and Aluminum to capture
  a gcc-toolchain cxxflags argument and pass it to a CMAKE_CUDA_FLAG
  argument when set.  This helps deal with compiling with clang on
  systems with old base gcc installations.
* Added a dependency on py-scipy when enabling tests on LBANN.
* Updated the C++ standard for Hydrogen to C++17.
* Added a new variant +apps to enable (or disable) python packages that
  are used by applications in the LBANN repo, but are not strictly
  required for building and using LBANN.
* Added a run time dependency for both py-pytest and py-scipy so that
  they are activated in any environment.
* Added support for building LBANN, Hydrogen, and DiHydrogen with the
  IBM ESSL BLAS library.  This requires explicit identification of
  additional LAPACK libraries, since ESSL does not implement LAPACK, but
  is found by CMake.
* Fixed a bug in the LBANN dependency on OpenCV for Power architectures.
  The +powerpc variant is only required for GCC toolchains and causes
  Clang to break. Switched to only enabling when using %gcc on power.
2022-02-11 17:33:15 -08:00
Richarda Butler
af4d555c20
Update/caliper stand alone test compiler (#28526) 2022-02-11 15:02:40 -08:00
Simon Frasch
dc949a5bda
spfft: fix missing hipFFT dependency with latest ROCm versions (#28880) 2022-02-11 14:17:40 -07:00
Teodor Nikolov
7ec9958b48
[rocm-smi-lib] Disable pdf generation with a patch (#28842)
- Installation often hangs building the documentation. This happens when
  doxygen and latex are found. To avoid the issue, comment-out that part
  of the code until an explicit cmake variable to disable documentation
  generation is available.
2022-02-11 13:47:50 -07:00
Cody Balos
853200c42d
sundials: add new version and fix smoke tests (#28894)
* sundials: fix smoke tests

* sundials: add new version

* use cmake+make instead of make for tests, fix style

* use cmake_bin workaround from https://github.com/spack/spack/pull/28622
2022-02-11 12:23:58 -08:00
Dom Heinzeller
ef030ed0ee
Bug fix for findutils: apply nonnull.patch only for versions 4.8.0+ (#28857) 2022-02-11 11:47:27 -07:00
haralmha
e365b05821
openloops: remove README from install prefix (#28767) 2022-02-11 11:11:33 -07:00
Glenn Johnson
61528c0b0a
swftools package: patches for GCC@10: (#28296) 2022-02-11 09:54:53 -08:00
Danny McClanahan
e8838109d8
move typing_extensions.py back into typing.py =\ (#28549) 2022-02-11 09:52:01 -08:00
Mikael Simberg
389b24c4dc
hpx: add conflict for Asio/CUDA (#27947)
* Add missing Asio versions from 1.16.0 to 1.21.0

* Add conflict for Asio/CUDA to HPX package

Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
2022-02-11 11:03:55 +01:00