Commit graph

22111 commits

Author SHA1 Message Date
Garth N. Wells
60eef9c0de
Add missing xtl dependency for fenics-basix and py-fenics-basix (#25151) 2021-07-31 21:10:24 -05:00
Erik Schnetter
b5f587bbe0
libjpeg-turbo: New version 2.1.0 (#25153) 2021-07-31 20:59:05 -05:00
gpotter2
b1abfd3ff6
Use the new cool Github templates (#25118)
* Use the new cool github templates

* Add the "mention maintainers" clause

* Fix broken HTML tag

* Minor improvements, missing filenames
2021-07-31 20:44:20 -05:00
Jen Herting
b4c6c11e68
[py-pyarrow] added version 3.0.0 and 4.0.1 (#25161)
* [py-pyarrow] added version 4.0.1

* [py-pyarrow] added version 3.0.0

* [py-pyarrow] updated dependencies for newer versions
2021-07-30 21:16:49 +00:00
Jen Herting
886e94d0ee
[arrow] added versions 3.0.0 and 4.0.1 (#25160)
* [arrow] added version 4.0.1

* [arrow] added version 3.0.0
2021-07-30 20:38:23 +00:00
Scott Wittenburg
de88d2c7cc
CI: capture stdout/stderr output to artifact files (#24401)
Gitlab truncates job trace output (even the complete raw output) at 4MB,
so this change captures it to a file under "user_data" artifacts as well,
to make sure we can debug output from the end of the rebuild job.
2021-07-30 13:24:03 -06:00
Scott Wittenburg
f591e9788d
pipelines: Store details about specs broken on develop (#24637)
When a spec fails to build on `develop`, instead of storing an empty file as the entry in the broken specs list, this change stores the full spec yaml as well as links to the failing  pipeline and job.
2021-07-30 09:11:00 -06:00
Ryan Marcellino
3df1d9062e
add new version of py-dvc (#25152)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 15:01:56 +00:00
Sebastian Ehlert
771e73dfa4
dftd4: add v3.2.0, v3.1.0 and v3.0.0 (#25145) 2021-07-30 14:56:40 +00:00
Ryan Marcellino
d02d683126
py-fsspec: add v0.9.0 (#25133)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 12:16:22 +02:00
Ryan Marcellino
3408440991
py-dulwich: add v0.20.21 (#25132)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 12:15:25 +02:00
Ryan Marcellino
3baac2faac
py-diskcache: add v5.2.1 (#25131)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 12:14:58 +02:00
Cyrus Harrison
69ce54b86a
fides: add new package (#25128) 2021-07-30 12:14:16 +02:00
Olli Lupton
84613da90a
Add C-Reduce and dependencies. (#25109) 2021-07-30 09:59:06 +00:00
Ryan Marcellino
4b89f6a90b
py-rich: add v10.0.0 (#25134)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 11:37:07 +02:00
Ryan Marcellino
c26f328e1a
py-psutil: add v5.8.0 (#25135)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 11:36:37 +02:00
Ryan Marcellino
d969320ba1
py-pygit2: add v1.6.0 (#25136)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-07-30 11:35:46 +02:00
downloadico
72acc54d84
octopus: add cuda variant (#25126) 2021-07-30 11:33:42 +02:00
Garth N. Wells
711ed17606
FEniCSx: updated dependencies (#25110)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-07-30 11:32:28 +02:00
Swann Perarnau
c1de2e926d
aml: update website, repository, and maintainer (#25140)
AML moved its repository and website during spring 2021.

Signed-off-by: Swann Perarnau <swann@anl.gov>
2021-07-30 11:22:20 +02:00
Axel Huebl
189ff91f25
openPMD-api: add v0.14.0 (#25142)
Add the latest release.
2021-07-30 11:14:19 +02:00
AMD Toolchain Support
bbfaf4e816
quantum-espresso: update patch for AOCC support (#25144)
Co-authored-by: mohan002 <mohbabul@amd.com>
2021-07-30 11:07:57 +02:00
Vanessasaurus
54e8e19a60
adding spack diff command (#22283)
A `spack diff` will take two specs, and then use the spack.solver.asp.SpackSolverSetup to generate
lists of facts about each (e.g., nodes, variants, etc.) and then take a set difference between the
two to show the user the differences.

Example output:

    $ spack diff python@2.7.8 python@3.8.11
     ==> Warning: This interface is subject to change.

     --- python@2.7.8/tsxdi6gl4lihp25qrm4d6nys3nypufbf
     +++ python@3.8.11/yjtseru4nbpllbaxb46q7wfkyxbuvzxx
     @@ variant_value @@
     -  python patches a8c52415a8b03c0e5f28b5d52ae498f7a7e602007db2b9554df28cd5685839b8
     +  python patches 0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87
     @@ version @@
     -  openssl Version(1.0.2u)
     +  openssl Version(1.1.1k)
     -  python Version(2.7.8)
     +  python Version(3.8.11)

Currently this uses diff-like output but we will attempt to improve on this in the future.

One use case for `spack diff` is whenever a user has a disambiguate situation and cannot 
remember how two different installs are different. The command can also output `--json` in
the case of a more analysis type use case where we want to save complete data with all
diffs and the intersection. However, the command is really more intended for a command
line use case, and we likely will have an analyzer more suited to saving data

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2021-07-30 00:08:38 -07:00
Zack Galbreath
e8f284bf52
ci: automatically prune the broken-specs list (#24809)
When a develop pipeline successfully finishes a `spack install`, check if
the spec that was just built is on the broken-specs list. If so, remove it.
2021-07-29 13:47:10 -06:00
Zack Galbreath
d7771f190f
Catch ConnectionError from CDash reporter (#24818)
* Catch ConnectionError from CDash reporter

Catch ConnectionError when attempting to upload the results of `spack install`
to CDash. This follows in the spirit of #24299. We do not want `spack install`
to exit with a non-zero status when something goes wrong while attempting to
report results to CDash.

* Catch HTTP Error 400 (Bad Request) in relate_cdash_builds()
2021-07-29 13:46:17 -06:00
sknigh
095f327f32
Update sst-elements and dependency packages (#25041)
* sst-elements: add optional support for flashdimmsim, dramsim3 and
  add new packages for each
* sst-dumpi: add version 7.1.0
* sst-core: autotools dependencies are required for all versions
* new package: dtc
* add error message redirect for +dumpi, otf, and otf2: these are not
  currently supported
2021-07-29 11:48:41 -07:00
Itaru Kitayama
a904418270
nest: add v3.0 and v2.20.1, removed previous versions (#24328)
Co-authored-by: Itaru Kitayama <itaru.kitayama@riken.jp>
2021-07-29 10:34:50 +02:00
Massimiliano Culpo
b42b0cd45a
Move build tests from GA to Gitlab (#25120)
Modifications:

- Remove the "build tests" workflow from GitHub Actions
- Setup a similar e2e test on Gitlab

In this way we'll reduce load on GitHub Actions workflows and for e2e tests will
benefit from the buildcache reuse granted by pipelines.
2021-07-29 09:08:32 +02:00
Brian Van Essen
adb507bdd9
Added support for using the Cray LibSci BLAS/LAPACK/ScaLAPACK library. (#25124) 2021-07-28 15:14:58 -07:00
Cyrus Harrison
db00cf24c0
add parmetis variant to conduit (#25127) 2021-07-28 15:09:19 -07:00
Satish Balay
c114cf019d
petsc: update config option logic for locating dependencies (#25074)
Primarily use --with-package-include, --with-package-lib options
(vs. --with-package-dir)
2021-07-28 14:09:54 -07:00
Chris White
7ea94d1103 add more directories to implicit link exclusion 2021-07-28 14:01:16 -07:00
iarspider
ace3753076
re2: addv2021-06-01 and 'shared' variant (#25121)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-07-28 19:07:12 +02:00
Michael Kuhn
d6cbaee16b
gcc: add v11.2.0 (#25125) 2021-07-28 17:02:40 +00:00
Rémi Lacroix
0d5e1c7db9
libxc: add v5.1.5 (#25123) 2021-07-28 18:42:05 +02:00
Houjun Tang
69464bf36f
pdc: add new package (#24762)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-07-28 18:31:25 +02:00
Dylan Simon
e3096e94b1
poppler: drop splash patch for 21.07.0 (#25032)
ENABLE_SPLASH configuration has been removed entirely after 21.06 so
patch is no longer necessary after #24931.  (Versions between 0.90.1 and
21.06 will likely still need a patch, and while it's not clear if this
patch is the right one, seems better to leave something in.)
2021-07-28 18:23:56 +02:00
Tim Moon
c9327649c0
nvshmem: set env variables instead of appending (#25095) 2021-07-28 16:07:24 +00:00
Tom Stitt
68f696af64
glvis: add v4.0 (#25045) 2021-07-28 17:51:53 +02:00
downloadico
737936d02c
octopus: add v10.5 (#25068) 2021-07-28 17:47:42 +02:00
Ethan Stam
a7ed20cb92
ParaView: disable VTK_MODULE_USE_EXTERNAL_ParaView_vtkcatalyst to avoid looking for external Catalyst_DIR (#25061) 2021-07-28 17:30:21 +02:00
Glenn Johnson
e29168ad02
gurobi: add v9.1.2 and extend python (#25064)
- add version 9.1.2
- set a license file
- set the license environment variable
- remove the download and license information out of the description so
  it does not show up in environment modules
- extend python and set python version constraints
- build gurobipy to be used in any compatible python, used for more
  extensive computations than the gurobi shell
- remove preexisting PYTHONPATH from gurobi.sh as the shell uses a
  built-in python, which will likely be different from "system" python
- add maintainer
2021-07-28 17:29:32 +02:00
gpotter2
be2e224e75
vtk-m: add conflict with gcc version < 5.0 (#25117) 2021-07-28 16:24:27 +02:00
iarspider
4d96f2668b
py-absl-py: add v0.11.0, v0.12.0, v0.13.0 (#25122) 2021-07-28 15:36:39 +02:00
Sreenivasa Murthy Kolam
ac2444f1d5
fix roctracer references in hip and cleanup code in rocprofiler-dev recipe (#24994)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-07-28 10:36:35 +02:00
Todd Gamblin
6104c31556 bugfix: be careful about GITHUB_BASE_REF in spack style
`spack style` previously used a Travis CI variable to figure out
what the base branch of a PR was, and this was apparently also set
on `develop`.  We switched to `GITHUB_BASE_REF` to support GitHub
Actions, but it looks like this is set to `""` in pushes to develop,
so `spack style` breaks there.

This PR does two things:

- [x] Remove `GITHUB_BASE_REF` knowledge from `spack style` entirely

- [x] Handle `GITHUB_BASE_REF` in style scripts instead, and explicitly
      pass the base ref if it is present, but don't otherwise.

This makes `spack style` *not* dependent on the environment and fixes
handling of the base branch in the right place.
2021-07-27 17:57:17 -07:00
Richarda Butler
af468235e2
AML: Add E4S testsuite stand alone test (#23874) 2021-07-27 17:30:34 -07:00
Todd Gamblin
c8efec0295
spack style: add --root option (#25085)
This adds a `--root` option so that `spack style` can check style for
a spack instance other than its own.

We also change the inner workings of `spack style` so that `--config FILE`
(and similar options for the various tools) options are used. This ensures
that when `spack style` runs, it always uses the config from the running spack,
and does *not* pick up configuration from the external root.

- [x] add `--root` option to `spack style`
- [x] add `--config` (or similar) option when invoking style tools
- [x] add a test that verifies we can check an external instance
2021-07-27 15:09:17 -06:00
Jen Herting
e5bbb6e5b4
[py-lmfit] added version 1.0.2 (#25108)
* [py-lmfit] fixed py-asteval dependency requirements

* [py-lmfit] added version 1.0.2

* [py-lmfit] flake8

* [py-lmfit] 1.0.2 reqires python 3.6

* [py-lmfit] removed newer dependency requirements to be in line with setup.py not requirements.txt
2021-07-27 16:59:45 +00:00
Seth R. Johnson
0a41d4ebb8
pbs: new virtual package (#24568)
* pbs: new virtual package

Some of our clusters have an older installation of
libtorque and tm.h that are *not* from OpenPBS. Using the current
openpbs dependency for openmpi causes concretization errors due to
restrictions on older python and hwloc requirements that don't apply,
even with an external non-buildable installation.
The new 'torque' bundle package allows users to point to that external
installation without problems.

Detailed description of torque by Sergey Kosukhin <skosukhin@gmail.com>
2021-07-27 16:37:00 +00:00