Commit graph

21210 commits

Author SHA1 Message Date
Satish Balay
a0216922f1
add sundials 5.5.0 (#19819)
(with xsdk build fixes, including mkl, superlu-dist)

Co-authored-by: Cody J. Balos <balos1@llnl.gov>
2020-11-09 13:59:55 -06:00
Amjad Kotobi
04fdcbed09
ruby-narray: Added git master branch (#19817) 2020-11-09 13:04:22 -06:00
ilbiondo
740cc4058b
tskit package (#19725)
* tskit package

* Update var/spack/repos/builtin/packages/tskit/package.py

I can't see any hard requirement for 3.6:

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fixes following PR review

* Update var/spack/repos/builtin/packages/tskit/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-09 13:03:09 -06:00
Ethan Stam
e73e7cf0ad
ParaView: correct path for PARAVIEW_VTK_DIR (#19770)
* ParaView: correct path for PARAVIEW_VTK_DIR

* Update formatting
2020-11-09 13:02:00 -06:00
Todd Gamblin
4092c90b57
commands: add spack tutorial command (#19808)
Added a command to set up Spack for our tutorial at
https://spack-tutorial.readthedocs.io.

The command does some common operations we need first-time users to do.
Specifically:

- checks out a particular branch of Spack
- deletes spurious configuration in `~/.spack` that might be
  left over from prior parts of the tutorial
- adds a mirror and trusts its public key
2020-11-09 12:47:08 +01:00
Mark Olesen
ac8a07ef4a
openfoam / openfoam-org : handle arch naming differences #19777 (#19778)
- issue caused by the openfoam-org internal naming for their
  newly added support for aarch64

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-11-08 20:26:51 -06:00
Michael Kuhn
0857648313
perl: make 5.32.0 the preferred version (#19799)
Version 5.32.0 has been out for quite a while and Linux distributions
are shipping it. I have also done a rebuild of some common packages with
the new version. Let's make it the preferred version.
2020-11-08 10:54:22 -06:00
Adam J. Stewart
1e35faa932
Bash: add new patches, maintainer (#19798) 2020-11-07 20:13:35 -06:00
mic84
765b4c5d2f
amrex: new options names for version > 20.11 (#19769)
* amrex: new options names for version > 20.11

* amrex: change option name DIM -> AMReX_SPACEDIM

* Update var/spack/repos/builtin/packages/amrex/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-07 14:10:08 -06:00
Brian Van Essen
9cd0f00607
Added code to help DiHydrogen find cuDNN and CUB (#19783)
* Added code to help DiHydrogen find cuDNN and CUB

* Cleaning up dependencies on CUB and adding guards for when newer
versions of CUDA include CUB and it should be excluded.

* Changed Hydrogen to disable half support by default.

* Have LBANN force Hydrogen and DiHydrogen to build without half when the variant is disabled.

* Added explicit variants to enusre that if LBANN is build without Cuda,
Aluminum, or Half support, it enforces those constraints for Hydrogen
and DiHydrogen.  Cleaned up the use of Python extend versus append in
LBANN and DiHydrogen recipes.

* Fixed Flake8
2020-11-07 14:09:00 -06:00
Michael Kuhn
887bf734e4
fdupes: new package (#19747) 2020-11-07 14:08:15 -06:00
vvolkl
1d7d4a9071
[evtgen] add env var (#19787)
* [evtgen] add env var

* Update var/spack/repos/builtin/packages/evtgen/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-07 14:06:41 -06:00
Itaru Kitayama
e87266c646
Add the scorep package dependency. (#19742)
Co-authored-by: Itaru Kitayama <itaru.kitayama@riken.jp>
2020-11-06 21:18:49 -06:00
Dr. Christian Tacke
c8b92ef34b
fmt: Add Version 7.1.2 (#19756) 2020-11-06 21:12:45 -06:00
Dr. Christian Tacke
3b4558fe6c
fairlogger: Add Version 1.9.0 (#19758) 2020-11-06 21:12:19 -06:00
Chen Wang
d085d53ebc
New version of Recorder: 2.1.6 (#19760) 2020-11-06 21:11:49 -06:00
eugeneswalker
fbc7cefcf7
make TIMER compatible with LLVM F18 (#19765) 2020-11-06 21:11:13 -06:00
Thomas Madlener
381305da0f
[root] fix package definition (#19775) 2020-11-06 21:04:23 -06:00
darmac
1d52bbdf17
Add new package: predixy (#19776) 2020-11-06 21:03:33 -06:00
Andrew W Elble
dcf3d8332a
cp2k: fix lmax variant to use tuple (#19780)
* cp2k: fix lmax variant to use tuple

discovered during testing #19501

@dev-zero

* retain conversion to string
2020-11-06 20:58:38 -06:00
Cyrus Harrison
ef9b8da282
add new vtk-h versions (#19785) 2020-11-06 20:53:36 -06:00
eugeneswalker
8dc8155ed5
fast-global-file-status needs elf (#19789) 2020-11-06 20:52:19 -06:00
eugeneswalker
73773ef9f3
spot: add v2.9.4 (#19790) 2020-11-06 20:51:48 -06:00
Michael Kuhn
f447657395
expat: add 2.2.10 (#19791) 2020-11-06 20:51:04 -06:00
Michael Kuhn
d8f2e54ebf
py-setuptools: add 50.3.2 (#19792) 2020-11-06 20:50:17 -06:00
Michael Kuhn
010ad6011e
glib: add 2.66.2 and 2.64.6 (#19793) 2020-11-06 20:49:21 -06:00
Tom Payerle
07b1ddee23
virtualgl: Change virtual jpeg dependency to libjpeg-turbo dep (#19795)
See #19784

virtualgl CMake system is looking for a specific libjpeg-turbo include
file, not present in libjpeg (currently the only other jpeg provider)
2020-11-06 20:47:09 -06:00
Adam J. Stewart
319c4f2e9e
meson: set STRIP on macOS (#19677)
* at-spi2-core: add new version

* Add strip hacks

* meson: set STRIP on macOS
2020-11-07 00:34:47 +01:00
ilbiondo
a3854700fb
cget package (#19728)
* cget package

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-06 16:39:42 -06:00
Frank Willmore
2df73cae38
Mumps oneapi (#19786)
added oneapi compiler to directives for mumps package

Co-authored-by: Frank Willmore <willmore@anl.gov>
2020-11-06 13:56:42 -08:00
Andrew W Elble
f59bbf9c3a
py-grpcio: workaround build failures pending new release (#19710)
https://github.com/grpc/grpc/pull/24449 grpc/grpc#24248
2020-11-06 15:02:11 -05:00
Jen Herting
1f8ca07f46
New package: code-server (#16076)
* [code-server] created template

* [code-server] installing base server

* [code-server] added description and homepage

* [code-server] removed fixmes

* [code-server] git version > 2 is recommended

* [code-server] added version 3.1.1

* [code-server] flake8

* [code-server] added version 3.4.1

* [code-server] cp() -> install_tree()

* [code-server] removes predefined utilies

* [code-server] ln() -> symlink()
2020-11-06 12:56:45 -06:00
Jen Herting
1b18e8fbad
New Package: libcumlprims (#19108)
* [libcumlprims] created template

* [libcumlprims] setting up version urls and added versions

* [libcumlprims] added dependencies

* [libcumlprims] installing prebuild binaries

* [libcumlprims] fixing dependencies

* [libcumlprims] trying to fix cumlprims includedir

* [libcumlprims] updated envvar to SPACK_INCLUDE_DIRS

* [libcumlprims] typoo

* [libcumlprims] added homepage and description. removed fixmes

* [libcumlprims] cp -> install_tree

* [libcumlprims] removed unused import

* [libcumlprims] using new version of updating header files env vars

* [libcumlprims] flake8
2020-11-06 12:55:29 -06:00
Adam J. Stewart
3953f6af95
oneDNN: add v1.7 (#19718) 2020-11-06 11:45:33 -06:00
Adam J. Stewart
3c4ee6d3cb
py-scipy: add v1.5.4 and master (#19757) 2020-11-06 11:45:14 -06:00
Adam J. Stewart
df3cc079eb
GDAL: add v3.2.0 (#19685)
* GDAL: add v3.2.0

* Fix typo: satisfes -> satisfies

Co-authored-by: Andrew W Elble <aweits@rit.edu>

Co-authored-by: Andrew W Elble <aweits@rit.edu>
2020-11-06 11:42:46 -06:00
Adam J. Stewart
e26d01022e
py-numpy: add v1.19.4 (#19678) 2020-11-06 11:41:48 -06:00
Sheng Di
2cb676e8d7
add z-checker (#19738)
* revise z-checker's package.py

* add mpi dependency to z-checker

* add one whitespace required by Flake8

* trailing whitespace

Co-authored-by: Sheng Di <sdi1@anl.gov>
2020-11-06 07:48:11 -06:00
Brian Van Essen
f041876470
Added CUB dependency to Aluminum (#19737)
* Added CUB dependency to Aluminum

* Added hash for version 0.6.0

* Added a maintainer field and slight cleanup.

* Cleanup extend versus append
2020-11-05 18:01:49 -06:00
Brian Van Essen
16c8cdaef7
LBANN update HWLOC versions (#19683)
* Updates in LBANN an Aluminum code now allow working with versions
HWLOC 1.11.x and 2.x and up.

* Updating the minimum CMake version to address a pending PR in LBANN
that will require C++17 support and needs CMake to properly separate
the compiler flags from nvcc.

* Clarified the support for different versions of HWLOC in LBANN
2020-11-05 16:28:27 -06:00
Greg Becker
8b96e10ecc
Remove hardcoded version numbers from container logic (#19716)
Previously, we hardcoded a list of Spack versions which could be used by the containerize command.

This PR removes that list. It's a maintenance burden when cutting a release, and prevents older versions of Spack from creating containers to be used by newer versions.
2020-11-05 18:59:44 +01:00
ilbiondo
dcd514c321
filtlong package (#19732)
* filtlong package

* Update var/spack/repos/builtin/packages/filtlong/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-05 11:04:24 -06:00
ilbiondo
4c254c6c9f
bamaddrg package (#19729)
* bamaddrg package

* Change version to URL rather than git
2020-11-05 11:02:43 -06:00
Andrew W Elble
08e825f474
kokkos-legacy: fix host_arch/gpu_arch variants (#19754)
'default' specifies a value that is not present in 'values'.
2020-11-05 17:31:11 +01:00
Andrew W Elble
6dc25e7dbf
py-pykwalify: fix conflict directive (missing '^') (#19753) 2020-11-05 17:30:32 +01:00
Andrew W Elble
fa7ba11d1a
py-quantities: fix conflict directive (missing '^') (#19752) 2020-11-05 17:30:08 +01:00
Andrew W Elble
9bca9611c5
py-flye: fix conflict directive (missing '%') (#19751) 2020-11-05 16:53:24 +01:00
Andrew W Elble
9908e7a590
pfunit: fix conflict directive (missing '+') (#19750) 2020-11-05 16:26:26 +01:00
Andrew W Elble
d7335185e3
heffte: fix conflict directive (missing '^') (#19749) 2020-11-05 16:26:03 +01:00
Adam J. Stewart
09ec3e9268
Update packages.yaml format references in packages (#19741) 2020-11-05 15:44:00 +01:00