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1183 commits

Author SHA1 Message Date
Denis Davydov
f84f04591b substitute cxx14_flag by a property with the same name to be overridden in derived classes 2016-05-05 10:48:31 +02:00
Denis Davydov
c6fb6bde40 remove cxx11_flag from Compiler as it is now substituted by a property with the same name 2016-05-05 10:47:02 +02:00
Denis Davydov
ddcb97f953 add a temporary Nag.cxx11_flag property 2016-05-05 10:44:41 +02:00
Denis Davydov
473a5542be compiler: make default openmp_flag() and cxx11_flag() die when these properties are not implemented in a derived class 2016-05-05 10:44:41 +02:00
Denis Davydov
30b65d3114 fix comment in Compiler class 2016-05-05 10:44:41 +02:00
Denis Davydov
e28ca3922f compiler: cleanup Nag.cxx11_flag and Pgi.cxx11_flag 2016-05-05 10:44:41 +02:00
Denis Davydov
d5a760776a compiler: add default implementation of openmp_flag() and css11_flag() 2016-05-05 10:44:41 +02:00
Denis Davydov
6a418cfb8d compiler: simplify Clang.is_apple 2016-05-05 10:44:41 +02:00
Denis Davydov
f2f1c49c90 compilers: one more missing import statement 2016-05-05 10:44:41 +02:00
Denis Davydov
07fd0ccc9a compiler: add Clang.is_apple property which checks if Clang is from Apple or not using version 2016-05-05 10:44:41 +02:00
Denis Davydov
592045cd54 compilers: make Intel::openmp_flag() return -openmp and -qopenmp based on the compiler version 2016-05-05 10:44:41 +02:00
Denis Davydov
3cd3052c56 compilers: minor fixes to Clang::cxx11_flag() and Clang::openmp_flag() 2016-05-05 10:44:41 +02:00
Denis Davydov
c078deaab1 compilers: add missing import statements 2016-05-05 10:44:41 +02:00
Denis Davydov
9776dc0433 compilers: add openmp_flag() method 2016-05-05 10:44:41 +02:00
Denis Davydov
2cdfe14e5a compilers: make sure cxx11_flag() is defined for all compilers 2016-05-05 10:44:41 +02:00
Todd Gamblin
13e52962ee Merge pull request #802 from gartung/std-cpp14 
Handle c++11 and c++14 correctly
 2016-05-05 01:41:55 -07:00
Denis Davydov
c3317819cb mpi: add self.spec.[mpicc|mpicxx|mpifc|mpif77] to avoid hardcoding MPI wrappers names 2016-05-04 10:37:52 +02:00
Gregory Becker
4ba73dac34 Unit tests for cflags PR 2016-04-28 14:01:38 -07:00
Gregory Becker
3b84345b77 Changed yaml format for node_dicts to mitigate future incompatibilities 2016-04-28 11:05:59 -07:00
Todd Gamblin
c35994d5bf Merge pull request #850 from mathstuf/partial-downloads 
fetch_strategy: download to temporary files
 2016-04-28 10:22:43 -07:00
Gregory Becker
ae5198e5e7 Merged in current develop to cflags 042716 2016-04-27 19:38:51 -07:00
Todd Gamblin
8773a0b747 Merge pull request #847 from epfl-scitas/features/test_install_with_time 
test-install command : added elapsed time + xml is prettyprinted
 2016-04-27 17:32:21 -07:00
Ben Boeckel
e53571d2f0 fetch_strategy: download to temporary files 
This supports graceful recovery if spack is killed via a signal (e.g.,
SIGINT) while downloading a file.

Fixes #287.
 2016-04-27 14:49:27 -04:00
Brett Viren
b5ebd12fe2 Add to sub dirs checked for pkg-config files. 
This lets me build against the pure-include package Eigen.
 2016-04-27 13:45:05 -04:00
Massimiliano Culpo
b1ba869b37 test-install : fixed error in logic exposed by tests 2016-04-27 19:28:13 +02:00
Massimiliano Culpo
4846ab70d8 test-install : python 2.6 compatibility 2016-04-27 18:21:36 +02:00
Massimiliano Culpo
ec5bb88820 test-install : unit tests (hopefully) fixed for real 2016-04-27 18:06:41 +02:00
alalazo
42fab1591d test-install : fixed unit tests 2016-04-27 17:19:03 +02:00
alalazo
12dbd65f4c test-install : first draft that works 2016-04-27 13:56:32 +02:00
Benedikt Hegner
b7c064142e preserve lookup order in PATH when invoking 'spack compiler add' 2016-04-27 01:23:53 +02:00
Ben Boeckel
603467785b Compiler find docs (#831) 
* docs: mention `spack compiler find`

* docs: fix some weird wording.
 2016-04-26 10:00:54 -07:00
alalazo
99b52e6e71 test-install : wip to add other information 2016-04-26 16:41:33 +02:00
Ben Boeckel
ff9145f8a5 executable: quote arguments 
This allows command line arguments with spaces to be shown. The quoting
madness is because a single quote cannot appear within a single quoted
argument on the command line. To do so, you have to stop the single
quote argument, double quote the single quote, then open the single
quote again:

    $ echo 'before'"'"'after'
    before'after

Fixes #174
 2016-04-25 09:44:17 -04:00
Ben Boeckel
ed16bd133a compiler: add "find" subcommand (#818) 
And make "add" an alias to it.

Fixes #713.
 2016-04-23 13:34:51 -07:00
alalazo
67a01ef2ee tcl : extended conflict to be an array of strings 2016-04-22 10:50:24 +02:00
Todd Gamblin
fa02f94ca4 Regression test for not adding RPATHs with ld -r (#809, #821) 
- ld -r is only broken with rpaths on OSX; this tests that
  specific case.

- test should still work cross-platform.
 2016-04-21 23:12:33 -07:00
Denis Davydov
a0989ad672 minor cleanup of environment-modules documentation (#814) 
* minor cleanup of environment-modules documentation

* environment modules: update usage instructions
 2016-04-21 19:26:19 -07:00
Patrick Gartung
d5d1e89cbd remove use of unknown environment variable in lib/spack/env/cc (#821) 2016-04-21 19:15:54 -07:00
Adam Lyon
e92da6a6ba Handle c++11 and c++14 correctly 2016-04-19 16:52:08 -05:00
alalazo
5deaaa278c modules : added a few unit tests 2016-04-19 14:25:12 +02:00
alalazo
bce276d573 fix : missing autoload, failing validation 2016-04-18 17:51:53 +02:00
alalazo
50b148ca22 modules : tcl modules handle 'conflict' directive. This should completely cover the functionality in #498 2016-04-18 13:22:50 +02:00
alalazo
18a241fe21 modules : added hook for module specific extensions 2016-04-18 13:22:31 +02:00
alalazo
c69acfa5c8 naming work correctly 2016-04-18 13:22:04 +02:00
alalazo
00f44d558a modules : started working on naming schemes and conflict 2016-04-18 13:21:41 +02:00
alalazo
1b4c4be151 modules : category is a single word (as I am not sure how dotkit will react to spaces) 2016-04-13 12:44:51 +02:00
alalazo
c422ce7c1d modules : added doc strings, fixed minor style issues, filtered from dependencies blacklisted modules 2016-04-13 11:26:22 +02:00
alalazo
fcd58a95dd Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 2016-04-13 10:49:00 +02:00
alalazo
27280ea8be fix : added regression tests 2016-04-12 17:28:23 +02:00
alalazo
80678b2188 fix : proper update of config file (before it was discarding architectures that were not the current one) fixes #774 2016-04-12 16:54:51 +02:00
alalazo
41f365112c modules : added provenance comment in tcl header 2016-04-12 09:13:50 +02:00
alalazo
3959ca6270 modules : added possibility to blacklist or whitelist module files 2016-04-11 18:10:06 +02:00
alalazo
0e2b1359e3 modules : fixed bug preventing the creation of modulefiles autoloading only direct dependencies 2016-04-11 11:01:47 +02:00
Massimiliano Culpo
a5a5dbc408 tcl module file : added new-lines in autoload (per @glennpj bug report) 2016-04-10 13:21:41 +02:00
Matthew LeGendre
1af88be371 Spack was no longer using $TMPDIR for its stage area at LLNL. Spack's directory search was unnecessarily putting candidates that contained your username at the end of its search list. 2016-04-08 11:06:14 -07:00
alalazo
1714f410f0 Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 2016-04-07 10:48:16 +02:00
alalazo
7dc1524c08 modules : added stub for dotkit (to be verified) 2016-04-07 10:48:05 +02:00
Glenn Johnson
b19d6ab9c5 Check for non-numeric bits in the stem. 2016-04-06 19:08:01 -05:00
Glenn Johnson
fbabfc593d Make R extensable and add a couple of packages for verification. 
Added R as a build system so that the create template will have the
correct configure line.
Added a regex for version parsing as the R URLs are a little odd.
 2016-04-06 16:44:22 -05:00
Massimiliano Culpo
4001663982 leftover from cherry-pick 2016-04-06 22:19:07 +02:00
alalazo
73b6214a13 module files : proper cleanup on uninstall fixes #216 
Conflicts:
	lib/spack/spack/test/database.py
 2016-04-06 22:10:04 +02:00
alalazo
21b7734d92 modules : removed debug leftover 2016-04-06 17:08:31 +02:00
alalazo
7904f75782 modules : all the other strings are lower case 2016-04-06 17:05:47 +02:00
alalazo
e4cfe74887 modules : customization based on specs 2016-04-06 16:42:56 +02:00
alalazo
e993c17f89 modules : added environment modifications from configuration file 2016-04-06 14:02:27 +02:00
alalazo
d636b4fdde modules : more sensible name to blacklist environment variables 
modules : added skeleton to permit modifications based on specs
 2016-04-06 13:42:47 +02:00
Todd Gamblin
e104592e1f Merge pull request #738 from eschnett/eschnett/cleanup-cc 
Clean up cc script
 2016-04-05 10:50:45 -07:00
alalazo
670cb423f9 modules : iterating on all the dependencies doesn't reuire try/except KeyError 2016-04-05 18:44:40 +02:00
alalazo
5da37c573f modules : don't pass stream around 2016-04-05 18:41:38 +02:00
alalazo
2968b60ee0 module file : added autoload and prereq 2016-04-05 18:03:09 +02:00
alalazo
ca7d701007 module file : all the dependencies can affect the run_time environment, not only extendees 2016-04-05 16:10:04 +02:00
alalazo
c352249e30 EnvModules : narrowing the type of exceptions being "handled" 2016-04-05 14:55:05 +02:00
Erik Schnetter
4ce03b75bc Correct typo 2016-04-05 07:42:23 -04:00
alalazo
d546d828d3 module file : added filtering based on environment variable name 2016-04-05 13:20:28 +02:00
Todd Gamblin
0296f96c7b Resolves #739. Don't call setup_dependent_* for package itself. 2016-04-04 13:56:15 -07:00
Erik Schnetter
0ff059e388 Clean up comments and output messages 2016-04-04 16:00:09 -04:00
Erik Schnetter
83d6e04d39 Convert = to == in tests; untabify 2016-04-04 15:38:21 -04:00
Erik Schnetter
7bc28cc334 Clean up cc script 2016-04-04 14:33:48 -04:00
Todd Gamblin
5084130e71 Merge pull request #715 from citibeth/efischer/160401-EnvironmentModules 
Added Environment Modules
 2016-04-04 10:41:54 -07:00
Todd Gamblin
c7b11360e9 Merge pull request #732 from citibeth/efischer/160403-ConditionalExtendsBugfix 
[Needs Review] Fix conditional extends (BUG #683)
 2016-04-04 10:21:26 -07:00
Todd Gamblin
a6c1cfe037 Merge pull request #670 from epfl-scitas/uninstall_improved 
enhancement : recursive uninstallation of dependent packages
 2016-04-04 10:04:14 -07:00
Todd Gamblin
bb968fc5a2 Fix #620, Resolve #664. Fix issues with build environment. 
- Also added better regression tests for build environment.
 2016-04-04 02:52:38 -07:00
alalazo
f40b0f52e0 uninstall : updated documentation and error messages 2016-04-04 10:59:01 +02:00
alalazo
401dcb3635 uninstall : renamed --recursive to --dependents 2016-04-04 10:28:47 +02:00
Elizabeth F
2f4d8a634d Fix conditional extends (BUG #683) 2016-04-03 21:41:46 -04:00
citibeth
459aab628d Added documentation for installing Environment Modules with Spack. 2016-04-01 16:00:58 -04:00
Todd Gamblin
220c72d67f Merge branch 'features/blas-lapack-hardening' into develop 2016-03-31 11:37:09 -07:00
Todd Gamblin
a670408617 Quick fix for pkg diff. 2016-03-31 11:34:27 -07:00
Tom Scogland
5d2151ed64 reworked to deal with stage.path as property 
This version actually pulls the path through the package to deliver it
to each stage on creation when passed through the command.  This is
necessary due to the new StageComposite class that makes setting the
path directly on the stage impractical, it also takes the logic out of
package for the most part, which seems like an improvement.
 2016-03-31 10:20:55 -07:00
Tom Scogland
63f824b218 add a path argument to the stage command 
Allow users to use spack to stage a, potentially complex, package into a
given path.  This is nice for packages with multiple resources that must
be placed, for example LLVM with all sub-projects.
 2016-03-31 09:56:26 -07:00
Massimiliano Culpo
4f6320a7eb uninstall : added unit tests 2016-03-31 13:22:48 +02:00
Massimiliano Culpo
dd1c667d8d uninstall : changed error message 2016-03-30 16:10:20 +02:00
Massimiliano Culpo
653d7c5257 uninstall : minor fixes 2016-03-29 17:28:46 +02:00
Todd Gamblin
a05bea7de5 Merge pull request #681 from LLNL/bugfix/complete-restage 
Fix bug in restage
 2016-03-29 05:11:21 -07:00
Todd Gamblin
dfc5cf288c Fix bug in restage 
- Restage previously only removed the source directory from the stage.
- Now removes any other directories in stage as well.
 2016-03-29 04:35:41 -07:00
Todd Gamblin
e1fdd4341b Merge branch 'eschnett-correct-cc' into develop 2016-03-29 04:16:18 -07:00
Todd Gamblin
f80e839ff4 Handle Darwin's ld -r option properly 
- ld -r doesn't work with RPATH on OS X.

- for GNU ld, the -r option only means 'relocatable',
  and doesn't affect RPATH.

- This adds special handling to omit RPATHs for ld -r on OS X
 2016-03-29 03:14:39 -07:00
Todd Gamblin
a14527ec06 Add command to compiler input log. 2016-03-28 15:34:25 -07:00
Massimiliano Culpo
1141f11955 uninstall : added user confirmation 2016-03-29 00:28:02 +02:00
Todd Gamblin
d8579a5b80 Simplify cc: Remove old logic and add better tests. 
- removed a lot of old logic that was only still needed for tests.

- Added better unit tests for dependency RPATH, -L, and -I args

- tests now check whether the compiler omits -I args in link mode.
 2016-03-28 04:11:54 -07:00
Todd Gamblin
f3dd889d44 Fix bug with lib64 RPATH setting in cc. 2016-03-28 03:51:05 -07:00
Todd Gamblin
eb397b5693 Merge pull request #669 from glennpj/module_format 
Wrap the long description of an environment module so it is more readable
 2016-03-27 17:30:07 -07:00
Todd Gamblin
8b45d6f84f Merge pull request #658 from davydden/metis_parmetis_darwin 
metis/parmetis/oce/boost: correct install_name on Darwin via a global tool
 2016-03-27 16:10:05 -07:00
Denis Davydov
7eca1284c8 metis/parmetis/boost/oce/scalapack: correct install_name on Darwin via a global function. 2016-03-28 00:22:25 +02:00
Massimiliano Culpo
e0f463c4f9 uninstall : added recursive option 2016-03-27 23:56:41 +02:00
Glenn Johnson
5695e4c03d Wrap the long description of an environment module so it is more readable. 2016-03-27 15:42:20 -05:00
Todd Gamblin
ec107b290f Merge branch 'correct-cc' of git://github.com/eschnett/spack into eschnett-correct-cc 2016-03-27 13:38:06 -07:00
Todd Gamblin
e049fc2840 Run post-install hoooks before build stage is removed. 
- Build will properly fail when post-install hoooks fail.

- Post-install hooks have a proper working directory set now.
 2016-03-27 11:47:20 -07:00
Todd Gamblin
cde3320582 Add a method to find the containing directory of a library. 2016-03-27 11:32:42 -07:00
Todd Gamblin
dce590fb21 Add a dso_suffix variable to build_environment 
- Consolidate this in one place so that we don't have to do it in every build.

- Will update further once better OS support is committed.  Shoudl
  really be an attribute of the forthcoming `Platform` class.
 2016-03-27 11:32:42 -07:00
Todd Gamblin
b0b882cbb3 Speed up directives by skipping debug info in stack traversal. 
- `caller_locals()` doesn't need debug info, only frame locals.
- `get_calling_module()` doesn't either.

- Changed calls to `inspect.stack()` -> `inspect.stack(0)`
 2016-03-27 11:30:09 -07:00
Adam J. Stewart
9985816642 Fix spack info indentation 2016-03-24 14:49:41 -05:00
alalazo
758a9c9096 python extensions : create PYTHONPATH in module files 2016-03-24 10:57:46 +01:00
alalazo
f095e619b9 module files configuration : enable/disable logic is now positive 2016-03-24 09:31:28 +01:00
alalazo
d93f2b335d modules : fixed annoying indent 2016-03-23 16:04:36 +01:00
alalazo
0fbdb3f65d modules : added configuration file with disable keyword 2016-03-23 15:54:26 +01:00
Todd Gamblin
38350ae33d resurrect preferred=True option for packages lost in merge of externals support. 
- Pyton 2.7.11 is preferred again.
 2016-03-23 01:32:54 -07:00
Todd Gamblin
c4134ee71e Fix #608: broken numpy build. 
- Failed to catch all instances of modify_module when it was renamed
  to setup_dependent_package.

- Refactored remaining modify_module calls.

- Also modified Python's setup_dependent_package slightly: only
  creates empty site-packages directory for Python extensions now, not
  for all dependents.
 2016-03-23 00:36:32 -07:00
Todd Gamblin
a26992ef55 Change from PR #552: rename setup_dependent_python_module -> setup_dependent_package 
- Fixed in package.py
- Fixed wrong prototypes in packages that use it.
- Fixed build_environment to set module variables properly
  - added hacky fix to ensure spec/package consistency in build processes.
  - Need to think about defensive spec copy done by `Repo.get`.  May be
    time to think about an immutable spec implementation.
 2016-03-22 01:56:16 -07:00
Todd Gamblin
b1516f64eb Rename some environment methods to be less repetitive, add set_path. 2016-03-21 16:01:40 -07:00
Todd Gamblin
439d47b4e4 Refactor environment setup. 
- Gave setup_environment and setup_dependent_environment more similar
  signatures. They now allows editing the Spack env and the runtime
  env for *this* package and dependents, respectively.

- modify_module renamed to setup_dependent_python_module for symmetry
  with setup_dependent_environment and to avoid confusion with
  environment modules.

- removed need for patching Package objects at runtime.

- adjust packages to reflect these changes.
 2016-03-21 16:01:35 -07:00
Todd Gamblin
e88df95b42 Remove unused code from modules.py 2016-03-21 16:01:26 -07:00
Todd Gamblin
48b35bb495 Fix print function in uninstall.py 2016-03-21 16:00:50 -07:00
Todd Gamblin
861a235ecb Merge pull request #552 from epfl-scitas/features/env_objects_flying_around 
enhancement proposal : customization of module files
 2016-03-21 15:56:20 -07:00
Matthew LeGendre
5d06daeb5e Add test for issue 573, child with compiler not respected in concretization 2016-03-21 14:28:34 -07:00
Matthew LeGendre
b79fce76cb Fix issue 573 where Spack was ignoring user's compiler preference in concretization 2016-03-21 14:28:07 -07:00
alalazo
fbeffee91e Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 
Conflicts:
	lib/spack/spack/package.py
	var/spack/repos/builtin/packages/netlib-scalapack/package.py
 2016-03-21 09:46:49 +01:00
alalazo
aef6d50b08 uninstall : fixed typo (print statement vs. print function) 2016-03-21 09:23:25 +01:00
Todd Gamblin
e9126baaab Add docs for InstallError. 2016-03-18 13:42:45 -07:00
Todd Gamblin
23f3f1adfe Make InstallError and ExternalPackageError visiible in packages. 2016-03-18 13:32:37 -07:00
Todd Gamblin
741bea032c Merge pull request #574 from LLNL/features/flattener 
Created flatten_dependencies function
 2016-03-18 12:13:48 -07:00
Gregory Becker
151b04637e changed function name and removed hardcoded libs dir 2016-03-18 11:55:31 -07:00
Gregory Becker
af7e3cadde cleanup 2016-03-18 11:34:07 -07:00
Gregory Becker
76672a4e34 Refactoring flat_install 2016-03-18 11:28:44 -07:00
Todd Gamblin
4e9ba49272 Merge pull request #576 from adamjstewart/features/tar 
Add support for .tar files
 2016-03-18 11:13:17 -07:00
Adam J. Stewart
6acb830263 Add support for .tar files 2016-03-18 13:03:55 -05:00
Gregory Becker
80495e50f9 added error class for error that should never come up 2016-03-18 09:46:18 -07:00
Gregory Becker
1fa38689d8 Created flatten_dependencies function that dummy packages can use to create sane install environments. 2016-03-18 09:35:56 -07:00
alalazo
491babd5cd env modifications : added a validation rule 2016-03-18 17:09:20 +01:00
alalazo
1e468c5541 modules : added formats mapping 2016-03-18 16:02:44 +01:00
alalazo
ccd90df62f modules : turned category into a property (logic can be extended later) 2016-03-18 15:41:14 +01:00
alalazo
67ca2c704b modules : fixed bug in modify_module arguments 2016-03-18 15:18:26 +01:00
alalazo
ec8cc2b528 PYTHONPATH : python patches methods for its extensions 2016-03-18 14:40:53 +01:00
Ben Morgan
076cc764a7 Add additional suffixes for GCC compiler 2016-03-18 11:26:22 +00:00
alalazo
f9438c75d0 Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around 2016-03-18 10:26:34 +01:00
Erik Schnetter
f3ea0420f8 Import recent changes 2016-03-17 21:53:13 -04:00
Erik Schnetter
84b7cd593f Merge branch 'develop' into correct-cc 
# Conflicts:
#	lib/spack/env/cc
 2016-03-17 21:52:24 -04:00
Todd Gamblin
90268876f7 Change sanity_check_[file|dir] to sanity_check_is_[file|dir], per #554 
- Add documentation as well.
 2016-03-17 18:49:58 -07:00
alalazo
ac394718ec python : implemented possible solution 2016-03-17 18:22:07 +01:00
alalazo
e673127263 package : added documentation 2016-03-17 18:11:23 +01:00