Commit graph

11906 commits

Author SHA1 Message Date
mic84
a212bb0577
Amrvis: update branch name (#17718) 2020-07-28 09:12:00 -07:00
Patrick Gartung
7c61d6d45f
Update darshan package with mpi variant (#17717)
* Update darshan package with nompi variant.

* Change variant to mpi and default to True
2020-07-27 16:30:29 -05:00
Glenn Johnson
ff529e6dc1
r-adespatial: added new package (#17700)
This PR adds the r-adesaptial package and several other new packages as
dependencies.

- r-adegraphics
- r-adephylo
- r-phylobase
- r-rncl
- r-rnexml
2020-07-27 22:08:48 +02:00
Glenn Johnson
1c0abaa6eb
r-dss: added new package at v2.36.0 with dependencies (#17661)
This PR adds the r-dss package and the r-bsseq package, also new, as a
dependency. This includes the latest versions, which required updates to
the following dependencies:

- r-biocgenerics
- r-iranges
- r-s4vectors
- r-summarizedexperiment

Older versions of r-dss and r-bsseq are included as well to ensure
compatibility with older versions of the above dependencies.
2020-07-27 20:51:27 +02:00
Seth R. Johnson
6c2749536e
qt: fixed build with apple-clang (#17706) 2020-07-27 18:32:29 +02:00
Adam J. Stewart
4e4b8d8249
SciPy: added v1.5.2 (#17708) 2020-07-27 18:26:30 +02:00
ketsubouchi
032a52e006
scons: added support to Fujitsu compilers (#17710) 2020-07-27 18:23:53 +02:00
Hadrien G
e3cc7fc38c
acts: added v0.29 (#17712) 2020-07-27 18:13:56 +02:00
Amjad Kotobi
f2e66730d0
openmpi: added lustre variant to openmpi (#17478) 2020-07-27 18:11:57 +02:00
Claire Guilbaud
0ebdfb3c37
sphinxcontrib-mermaid: new package at v0.4.0 (#17630) 2020-07-27 17:30:22 +02:00
Claire Guilbaud
fdb21e3e91
json logger: new package at v0.1.11 (#17628) 2020-07-27 16:32:56 +02:00
Claire Guilbaud
d66d430ab5
pygments pytest: new package at v1.2.0 (#17626) 2020-07-27 15:44:26 +02:00
Claire Guilbaud
bbfc9fd448
commonmark: new package at v0.9.0 (#17624) 2020-07-27 15:02:56 +02:00
Claire Guilbaud
e960e016af
hieroglyph: new package at v1.0.0 (#17625) 2020-07-27 14:34:40 +02:00
Claire Guilbaud
074c0d622f
python docs theme: new package at v2020.1 (#17627) 2020-07-27 12:53:04 +02:00
Claire Guilbaud
458a9f22da
yolk3k: new package at v0.9 (#17635) 2020-07-27 12:48:58 +02:00
Claire Guilbaud
38730c6e68
sphinxcontrib trio: new package at v1.1.2 (#17631) 2020-07-27 12:14:12 +02:00
Claire Guilbaud
21a4edb1f3
sphinx gallery: new package at v0.7.0 (#17633) 2020-07-27 11:21:48 +02:00
Hadrien G
907f9e8411
[root] Add version 6.22 (#17459)
* Add ROOT v6.22

* Hello xext my old friend...
2020-07-26 10:08:53 -05:00
Patrick Gartung
66d59a90ed
Rename sas static-analysis-package (#17695) 2020-07-24 17:07:01 -07:00
Nicholas Sly
5795f1d7da
Add Totalview package (#17643)
* Add initial totalview package.

* Add maintainer and helpful comments/information.

Co-authored-by: sly <sly@lanl.gov>
2020-07-24 16:01:32 -07:00
t-nojiri
de6dfe3707
brltty (package): Add dependency on alsa-lib (#17616) 2020-07-24 15:56:34 -07:00
Jen Herting
148acfefcc
py-gensim (package): add version 3.8.3; update dependency constraints (#17641) 2020-07-24 15:47:19 -07:00
Matthieu Dorier
b04f9e6774
MPICH (package): add optional support for argobots (#17678) 2020-07-24 15:42:00 -07:00
Christian Tacke
0e090064c4 singularity: Add version 3.6.1 2020-07-24 15:35:40 -07:00
vvolkl
be06803804
WHIZARD (package): add LCIO dependency, Openloops support (#17658)
* WHIZARD: add versions 2.8.4 and 2.8.3
* New package: LCIO
* WHIZARD: add optional dependency on LCIO
* WHIZARD: add optional dependency on Openloops
* WHIZARD: allow building with either hepmc or hepmc3 dependencies
* Openloops: set process_lib_dir in configure
* Openloops: fix reference to variant
2020-07-24 15:25:57 -07:00
Andrew W Elble
99c46e8186
py-astropy: force re-cythonization of distributed .pyx files (#17567)
astropy 3.2.1 fails to build with python 3.8.3 with
errors similar to this:

astropy/stats/_stats.c:318:11: error: too many arguments to function 'PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)

These are files that are generated by cython, but are included in the
tarball. Since there's apparently been an API change to PyCode_New, they will
need to be re-cythonized to compile correctly.
2020-07-24 17:46:56 +02:00
Andrew W Elble
30d0347825
py-astropy-healpix: new package (#17568) 2020-07-24 17:39:45 +02:00
jdomke
ea50e4036e
scorep: add libunwind dependency (#17580) 2020-07-24 17:30:50 +02:00
Harmen Stoppels
54bce00d4d
Ensure that the stubs directory does not end up in the rpath (#17619) 2020-07-24 17:02:58 +02:00
Jon Rood
d3e4b14997
imagemagick: added dependency on libsm (#17577) 2020-07-24 17:00:25 +02:00
rempke
6bad79fca0
netlib-scalapack: fixed compilation with gcc 10 (#17647) 2020-07-24 16:53:32 +02:00
t-nojiri
13b3578d2f
camx: change compile option for aarch64 (#17653) 2020-07-24 16:39:40 +02:00
Adam J. Stewart
08b5b56566
Qhull: add v2019.1 and v2020.1 (#17648)
* Qhull: add v2019.1 and v2020.1
* Fix compilation with Apple Clang
2020-07-24 16:16:53 +02:00
Adam J. Stewart
c1a2d66804
py-matplotlib: fix freetype and qhull dependencies (#17649) 2020-07-24 16:15:50 +02:00
Mark Olesen
c95c183bc4
openfoam: install META-INFO directory (#17673)
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-07-24 15:32:18 +02:00
Michael Kuhn
ed4b770e1a
gcc: added v10.2.0 (#17681) 2020-07-24 15:24:12 +02:00
Federico Ficarelli
b8c3e3e16f
hipsycl: switch to renamed default branch (#17689) 2020-07-24 15:19:59 +02:00
Rémi Lacroix
d9c1b62d38
CMake: added v3.18.0. (#17688) 2020-07-24 15:02:08 +02:00
ilbiondo
1aa1ddcd78
Updated elmer-fem recipe (#17687) 2020-07-24 09:47:09 +02:00
Adam J. Stewart
5fed42eae8 NumPy: add v1.19.1 2020-07-23 17:56:48 -07:00
ketsubouchi
1bbf8c0635
libgd (package): update configure to find jpeg dependency (#17655) 2020-07-23 17:55:34 -07:00
ketsubouchi
1fe07891e3
cctools (package): remove fstack-protector-all for Fujitsu compiler (#17656)
The Fujitsu C compiler does not support the "fstack-protector-all" option.
2020-07-23 17:49:37 -07:00
Tamara Dahlgren
a88675ffa9
XBraid (package): Switch to Github URL (#17670) 2020-07-23 17:27:25 -07:00
Chuck Atkins
547c71ad78
Revert "Add libglvnd packages/Add EGL support (#14572)" (#17682)
This reverts commit 573489db71.
2020-07-23 17:41:48 -04:00
ilbiondo
f42394daf5
csa-c: added new package at master (#17676)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-07-23 17:07:48 +02:00
ilbiondo
10dacc2588
nn-c: added new package at v1.86.2 (#17675)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-07-23 17:06:35 +02:00
ilbiondo
5067b956f4
Shapeit4: added new package at v4.1.3 (#17674) 2020-07-23 13:22:58 +02:00
Nick Robison
39cfa9630c
[M4] Add missing compiler flag on Cray Compiler (#17604)
* [M4] Add missing compiler flag on Cray Compiler

The new version of the Cray Compiler are based on Clang, which means we
need to add the same LDFLAG as other clang environments.
2020-07-22 23:55:03 -07:00
Adam J. Stewart
4b33558707
Cython: add v0.29.21 (#17650) 2020-07-22 18:36:55 -07:00