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Author SHA1 Message Date
Samuel Fux
46bf21f05e Adding patch to Opencv (3.3.0-3.4.1) for fixing conflict between CUDA and OpenCV dnn header file (#8502) 
* Adding patch for OpenCV to fix a conflict between an OpenCV and a CUDA header file

* Added patch command to package.py file for OpenCV SPACK package.

* Adding version range for patch.

* shortening comment lines, since testsuite failed
 2018-06-18 09:53:48 -05:00
George Hartzell
cb11e1b8ee There's only one 'u' in "configuration" (#8498) 2018-06-17 19:11:16 -05:00
Pramod Kumbhar
98f11b9def Add new versions for TAU and PDT package (#8497) 2018-06-17 17:21:00 -05:00
Jim Galarowicz
ec66e0fb7e Add changes to the Krell packages with version updates and ranges for the latest release. (#8468) 
* Add changes to the Krell packages with version updates and ranges for the latest release.

* Add reviewer requested changes.  Remove preferred clauses and update the qt version for the cbtf-argonavis-gui@develop

* Trigger integration/test restart
 2018-06-17 09:49:27 -05:00
Todd Gamblin
afe7964670
docs: remove vendored sphinx_rtd_theme (#8496) 2018-06-17 01:13:56 -07:00
Jon Rood
129e03a2e0 Trilinos needs parallel-netcdf as an explicit dependency to avoid concretization errors when netcdf is an external. (#8493) 2018-06-16 14:11:07 -05:00
Satish Balay
fe0fd6ef34 superlu_dist: 'master' is branch - not tag (#8495) 
==> Trying to clone git repository: https://github.com/xiaoyeli/superlu_dist at tag master
Fetching tags only, you probably meant:
  git fetch --tags
 2018-06-16 08:18:01 -05:00
Jon Rood
4e4457f820 SAMRAI: new versions, handle deprecation of boost in latest version. (#8494) 2018-06-15 22:53:59 -07:00
Adam J. Stewart
cea5d04a1e
Fix GDAL Python bindings and add import tests (#8482) 2018-06-15 10:14:50 -05:00
Pramod Kumbhar
a3a9b2ab2b Add newer likwid versions 4.3.1 and 4.3.2 (#8488) 2018-06-15 10:14:00 -05:00
Matthias Maiterth
a85981b250 Package/geopm: Update to version 0.5.0 (#8487) 2018-06-15 08:17:17 -05:00
Veselin Dobrev
a3c989ef3a [mfem] Add BLAS+LAPACK to the required dependencies of SuperLU_DIST. (#8485) 2018-06-15 11:34:04 +02:00
Todd Gamblin
5f852634cd openssl: add new version 1.0.2o (#8486) 2018-06-15 09:54:52 +02:00
Dan FitzGerald
d182d85dd1 Update the clang compiler definition to use IBM XL Fortran compiler (#8389) 
on CORAL systems (linux-rhel7-ppc64le).
 2018-06-14 20:51:45 -07:00
Dan FitzGerald
54aab585c4 Patch trilinos for xlf when using clang (#8391) 
* Add patching for xlf when %clang.  Changes are effective only when Fortran compiler is 'XL'.
* Use the right version for trilinos when patching for seacas.
 2018-06-14 20:48:43 -07:00
Dan FitzGerald
64d20a3955 Use no mangling for all spack compiler definitions that use the XL (#8392) 
Fortran compiler.
Clang can build with IBM XL Fortran compiler as well, so the name
mangling shoud be avoided for that case as well.
 2018-06-14 20:46:09 -07:00
Dan FitzGerald
a67b2e2942 Use the name of the Fortran compiler to determine what name mangling (#8393) 
setting to use, instead of the spack compiler.

%clang can use multiple Fortran compilers with different options, so
we need to know what compiler is used in order to provide the correct
options.
 2018-06-14 20:45:21 -07:00
健美猞猁
98d8bdebbe A new package: megahit. (#8471) 2018-06-14 13:45:12 -05:00
Matthias Wolf
75c0007cf8 neovim: add info for v0.3.0 (#8472) 2018-06-14 13:44:40 -05:00
Denis Davydov
53517c60b6 oce: add 0.18.3 (#8477) 2018-06-14 13:44:14 -05:00
Praveen C
34c08ed362 netgen should depend on zlib (#8473) 2018-06-14 13:43:43 -05:00
Denis Davydov
b5fcd62891 openblas: add 0.3.0 (#8478) 2018-06-14 13:43:05 -05:00
Denis Davydov
484e54d78e petsc: add 3.9.1 and 3.9.2 (#8479) 2018-06-14 13:42:12 -05:00
Denis Davydov
df657275e4 slepc: add 3.9.1 (#8480) 2018-06-14 13:41:52 -05:00
Denis Davydov
a878e76f93 superlu-dist: add 5.3.0 and 5.4.0 (#8481) 2018-06-14 13:41:35 -05:00
Serban Maerean
ee4050c58f boost package: patch dirent for pgi and boost 1.67 (#8313) 2018-06-13 15:53:14 -07:00
Satish Balay
eac8cf83bd xsdk: fix 'ChecksumError: md5 checksum failed' (#8440) 
[error came up with the  prior url pointing to a 'master' branch. so fixing with a switch to a fixed tarball]
 2018-06-13 13:46:38 -07:00
Satish Balay
2829ebd485 xsdk: update xsdk@develop dependency on mfem@develop (#8462) 2018-06-13 13:45:34 -07:00
Veselin Dobrev
a0c2a25a72 [mfem] new version: 3.4 (#8453) 
* Add new version (3.4.0) with new variant (pumi).
* Fix an issue: skip the tests in examples/pumi as they require
files that are not included in the mfem distribution/repository.
* Use patches to fix the testing issues with PUMI and PETSc v3.9.
* Use the new bit.ly short link for v3.4.
 2018-06-13 13:42:21 -07:00
Jim Galarowicz
674feb45f1 Add the ability to build the dyninst master branch under the develop version name. (#8455) 
* Add the ability to build the dyninst master branch under the develop version name.  Fix elfutils and libdwarf to work with the various dyninst versions and vice-versa.

* Add reviewer suggested change to dyninst package file.  Remove colon in spec.satisfies clause.

* Add reviewer suggested change to dyninst package file. Remove duplicate lines.

* Add reviewer suggested change to dyninst package file. Encompass all versions under 10.0 with respect to using libdwarf in the build.
 2018-06-13 13:35:32 -07:00
Timo Heister
758b813c36 new package: ASPECT (#8459) 
* add ASPECT package

* add maintainer

* simplify
 2018-06-13 14:42:29 -05:00
Axel Huebl
664f03e329 ADIOS: Revert Patch (#8463) 
That patch is only a partial solution and does not solve the
issue. Revert is, unnecessary.
 2018-06-13 14:42:13 -05:00
Axel Huebl
6d4909d69b Add: MPILander (#8464) 
MPILander - There can only be one (MPI process)!

The final MPI implementation.
 2018-06-13 14:40:51 -05:00
Michael Kuhn
04dce19155 gplates: new package (#8336) 
This also adds an older 1.x version to gdal that is required by gplates.
 2018-06-13 08:57:52 -05:00
Simone Bnà
470d4ddd96 openfoam-com: added submodule flag to git fetch (#8446) 2018-06-13 08:56:52 -05:00
Miles Perry
fa00a04e91 blasr-libcpp: new package (#8366) 
* blasr-libcpp: new package

* blasr-libcpp: added version #, and moved make into build phase.

* blasr-libcpp: added prefix.include to PBBAM_INC, added version URL

* blasr-libcpp: indented comments, made list of configure_args, and added prefix.include

* blasr-libcpp: added setup_dependent_environment from blasr

* blasr-libcpp: fixed syntax for configure_args

* blasr-libcpp: fixed configure_args syntax

* blasr-libcpp: fixed syntax

* blasr-libcpp: syntaxtest

* blasr-libcpp: fixed def build error

* blasr-libcpp: edited dependent environment to move after install phase

* blasr-libcpp: rearranged build and install

* blasr-libcpp: added configure_args

* blasr-libcpp: fixed syntax error

* blasr-libcpp: removed .spec from INC and LIB alignment, pbdata, hdf

* blasr-libcpp: seperated configure args

* blasr-libcpp: edited configure and setup_dependent steps

* blasr-libcpp: added CPATH arg

* blasr-libcpp: C_INCLUDE_PATH

* blasr-libcpp: fixed install issues resulting from PacBio change
 2018-06-13 08:55:31 -05:00
Satish Balay
c12855dce5 trilinos: use 'branch' option to specify branches such as develop/master [they are not tags] (#8448) 
Fixes the following problem:

==> Installing trilinos
==> Warning: Suspicious requests to set or unset 'LD_LIBRARY_PATH' found
==> Warning: 	    	env.unset('LD_LIBRARY_PATH') at /home/balay/spack.new/lib/spack/spack/build_environment.py:269
==> Warning: 	--->	env.set('%s' % key, value) at /home/balay/spack.new/lib/spack/spack/build_environment.py:292
==> Trying to clone git repository: https://github.com/trilinos/Trilinos.git at tag develop
Fetching tags only, you probably meant:
  git fetch --tags
error: pathspec 'develop' did not match any file(s) known to git.
==> Fetching from [git] https://github.com/trilinos/Trilinos.git failed.
==> Error: FetchError: All fetchers failed for trilinos-develop-tgkpnctp6nn4imoizxlw4ymqyztcie4n
 2018-06-13 08:54:53 -05:00
Timo Heister
b27da52e4b new package: dealii-parameter-gui (#8456) 2018-06-13 08:44:10 -05:00
Satish Balay
1d14ec7436 petsc: 'master' is a branch - not a tag - so fix it accordingly. (#8457) 2018-06-13 08:43:09 -05:00
Veselin Dobrev
683addc26d [GLVis] Add new version: 3.4 (#8454) 
* [glvis] Add new version, 3.4; update all checksums to be SHA-256.

* [GLVis] Use the new bit.ly short link for v3.4.
 2018-06-13 08:42:45 -05:00
Elizabeth Fischer
3cbae250f0 new package: pdftk (#8166) 2018-06-12 11:25:20 -07:00
Adam J. Stewart
0f1a1ae94e Add trailing slash when spidering URLs for versions (#8429) 
By default, if a package does not specify a list_url and does not download from
a common repository, Spack runs dirname on the package URL. Given a URL
like https://root.cern.ch/download/root_v6.09.02.source.tar.gz, this returns
https://root.cern.ch/download. However, https://root.cern.ch/download
gives a 404, while https://root.cern.ch/download/ works just fine.

Note that some servers *don't* work with a trailing slash, so this tries with and
without the slash. This will double the number of URLs searched but the
slowdown should only affect the "spack versions" command.
 2018-06-12 10:33:47 -07:00
Axel Huebl
583af6ef4f Package: ISAAC 1.4.0 (#8447) 2018-06-12 11:11:32 -05:00
Satish Balay
8e7d98c5fa superlu_dist: fix 'spack install superlu-dist@develop' (#8442) 
Latest superlu_dist sources now use INCLUDEDIR.
This change should not affect older superlu_dist version builds
 2018-06-12 08:21:10 -05:00
Massimiliano Culpo
004e9b8948 Fixed compilation of quantum-espresso (#8439) 
The patch to select ELPA API needs to be applied to
version 6.2.0 too.

The link line of hdf5 is computed incorrectly from
the configuration part of the build-system. To fix
this the relevant file (make.inc) is patched.
 2018-06-11 11:42:13 -05:00
Denis Davydov
d943754e92 boost: fix cxxstd=default (#8438) 2018-06-11 10:31:27 -05:00
Javier Cervantes
4ec3cb1ddb Add new package: unuran (#8397) 
* Add new package: unuran

* Remove list_url and prng variant due to compilation problems

* Make shared library option more explicit
 2018-06-11 08:41:32 -05:00
Denis Davydov
69ec8deec8 arpack-ng: add 3.6.0 (#8433) 2018-06-10 15:16:42 -05:00
健美猞猁
35a83540f0 A new package: axel. (#8434) 
* A new package: axel.

* Remove duplicate pkgconf.
 2018-06-10 15:16:16 -05:00
健美猞猁
80c1984e68 Bump miniconda to 4.5.4. (#8435) 2018-06-10 15:15:43 -05:00