Commit graph

13408 commits

Author SHA1 Message Date
darmac
1d52bbdf17
Add new package: predixy (#19776) 2020-11-06 21:03:33 -06:00
Andrew W Elble
dcf3d8332a
cp2k: fix lmax variant to use tuple (#19780)
* cp2k: fix lmax variant to use tuple

discovered during testing #19501

@dev-zero

* retain conversion to string
2020-11-06 20:58:38 -06:00
Cyrus Harrison
ef9b8da282
add new vtk-h versions (#19785) 2020-11-06 20:53:36 -06:00
eugeneswalker
8dc8155ed5
fast-global-file-status needs elf (#19789) 2020-11-06 20:52:19 -06:00
eugeneswalker
73773ef9f3
spot: add v2.9.4 (#19790) 2020-11-06 20:51:48 -06:00
Michael Kuhn
f447657395
expat: add 2.2.10 (#19791) 2020-11-06 20:51:04 -06:00
Michael Kuhn
d8f2e54ebf
py-setuptools: add 50.3.2 (#19792) 2020-11-06 20:50:17 -06:00
Michael Kuhn
010ad6011e
glib: add 2.66.2 and 2.64.6 (#19793) 2020-11-06 20:49:21 -06:00
Tom Payerle
07b1ddee23
virtualgl: Change virtual jpeg dependency to libjpeg-turbo dep (#19795)
See #19784

virtualgl CMake system is looking for a specific libjpeg-turbo include
file, not present in libjpeg (currently the only other jpeg provider)
2020-11-06 20:47:09 -06:00
Adam J. Stewart
319c4f2e9e
meson: set STRIP on macOS (#19677)
* at-spi2-core: add new version

* Add strip hacks

* meson: set STRIP on macOS
2020-11-07 00:34:47 +01:00
ilbiondo
a3854700fb
cget package (#19728)
* cget package

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-06 16:39:42 -06:00
Frank Willmore
2df73cae38
Mumps oneapi (#19786)
added oneapi compiler to directives for mumps package

Co-authored-by: Frank Willmore <willmore@anl.gov>
2020-11-06 13:56:42 -08:00
Andrew W Elble
f59bbf9c3a
py-grpcio: workaround build failures pending new release (#19710)
https://github.com/grpc/grpc/pull/24449 grpc/grpc#24248
2020-11-06 15:02:11 -05:00
Jen Herting
1f8ca07f46
New package: code-server (#16076)
* [code-server] created template

* [code-server] installing base server

* [code-server] added description and homepage

* [code-server] removed fixmes

* [code-server] git version > 2 is recommended

* [code-server] added version 3.1.1

* [code-server] flake8

* [code-server] added version 3.4.1

* [code-server] cp() -> install_tree()

* [code-server] removes predefined utilies

* [code-server] ln() -> symlink()
2020-11-06 12:56:45 -06:00
Jen Herting
1b18e8fbad
New Package: libcumlprims (#19108)
* [libcumlprims] created template

* [libcumlprims] setting up version urls and added versions

* [libcumlprims] added dependencies

* [libcumlprims] installing prebuild binaries

* [libcumlprims] fixing dependencies

* [libcumlprims] trying to fix cumlprims includedir

* [libcumlprims] updated envvar to SPACK_INCLUDE_DIRS

* [libcumlprims] typoo

* [libcumlprims] added homepage and description. removed fixmes

* [libcumlprims] cp -> install_tree

* [libcumlprims] removed unused import

* [libcumlprims] using new version of updating header files env vars

* [libcumlprims] flake8
2020-11-06 12:55:29 -06:00
Adam J. Stewart
3953f6af95
oneDNN: add v1.7 (#19718) 2020-11-06 11:45:33 -06:00
Adam J. Stewart
3c4ee6d3cb
py-scipy: add v1.5.4 and master (#19757) 2020-11-06 11:45:14 -06:00
Adam J. Stewart
df3cc079eb
GDAL: add v3.2.0 (#19685)
* GDAL: add v3.2.0

* Fix typo: satisfes -> satisfies

Co-authored-by: Andrew W Elble <aweits@rit.edu>

Co-authored-by: Andrew W Elble <aweits@rit.edu>
2020-11-06 11:42:46 -06:00
Adam J. Stewart
e26d01022e
py-numpy: add v1.19.4 (#19678) 2020-11-06 11:41:48 -06:00
Sheng Di
2cb676e8d7
add z-checker (#19738)
* revise z-checker's package.py

* add mpi dependency to z-checker

* add one whitespace required by Flake8

* trailing whitespace

Co-authored-by: Sheng Di <sdi1@anl.gov>
2020-11-06 07:48:11 -06:00
Brian Van Essen
f041876470
Added CUB dependency to Aluminum (#19737)
* Added CUB dependency to Aluminum

* Added hash for version 0.6.0

* Added a maintainer field and slight cleanup.

* Cleanup extend versus append
2020-11-05 18:01:49 -06:00
Brian Van Essen
16c8cdaef7
LBANN update HWLOC versions (#19683)
* Updates in LBANN an Aluminum code now allow working with versions
HWLOC 1.11.x and 2.x and up.

* Updating the minimum CMake version to address a pending PR in LBANN
that will require C++17 support and needs CMake to properly separate
the compiler flags from nvcc.

* Clarified the support for different versions of HWLOC in LBANN
2020-11-05 16:28:27 -06:00
ilbiondo
dcd514c321
filtlong package (#19732)
* filtlong package

* Update var/spack/repos/builtin/packages/filtlong/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-05 11:04:24 -06:00
ilbiondo
4c254c6c9f
bamaddrg package (#19729)
* bamaddrg package

* Change version to URL rather than git
2020-11-05 11:02:43 -06:00
Andrew W Elble
08e825f474
kokkos-legacy: fix host_arch/gpu_arch variants (#19754)
'default' specifies a value that is not present in 'values'.
2020-11-05 17:31:11 +01:00
Andrew W Elble
6dc25e7dbf
py-pykwalify: fix conflict directive (missing '^') (#19753) 2020-11-05 17:30:32 +01:00
Andrew W Elble
fa7ba11d1a
py-quantities: fix conflict directive (missing '^') (#19752) 2020-11-05 17:30:08 +01:00
Andrew W Elble
9bca9611c5
py-flye: fix conflict directive (missing '%') (#19751) 2020-11-05 16:53:24 +01:00
Andrew W Elble
9908e7a590
pfunit: fix conflict directive (missing '+') (#19750) 2020-11-05 16:26:26 +01:00
Andrew W Elble
d7335185e3
heffte: fix conflict directive (missing '^') (#19749) 2020-11-05 16:26:03 +01:00
Adam J. Stewart
09ec3e9268
Update packages.yaml format references in packages (#19741) 2020-11-05 15:44:00 +01:00
Andrew W Elble
c4b4cd4973
py-llvmlite: fix llvm compatibility version (#19739)
won't build with llvm 11
2020-11-04 15:17:19 -06:00
Chris White
4cd711cb79
Axom: update package (#19717)
* update spack package from axom's main repo

* flake8, plus loop over possible clangformat paths
2020-11-04 14:37:24 -06:00
Jeremy
6f4e2e58c3
10.1 release and various bug fixes for SST packages (#19719) 2020-11-04 12:47:41 -06:00
arjun-raj-kuppala
cc0a585816
AMD - Bumped up version for hip-rocclr, rocm-opencl, rocm-smi-lib (#19721) 2020-11-04 12:44:59 -06:00
Sreenivasa Murthy Kolam
3daa7b7b40
update rocm-bandwidth-test,rocm-dbgapi,rocprofiler for rocm 3.9.0 (#19724)
* update rocm-bandwidth-test,rocm-dbgapi,rocprofiler for rocm 3.9.0

* bump up rocm-gdb for rocm-3.9.0
2020-11-04 12:43:40 -06:00
ilbiondo
ab046403f6
admixtools package (#19727) 2020-11-04 12:37:15 -06:00
Satish Balay
5b02910e9c
petsc add version 3.14.1 (#19730) 2020-11-04 12:27:11 -06:00
Veselin Dobrev
5511c29869
New MFEM version: 4.2 (#19684) 2020-11-04 12:26:39 -06:00
Robert Maynard
823a3fa646
Added HIP support to VTK-m package (#19523) 2020-11-04 12:25:17 -06:00
Satish Balay
c2b943c209
Trilinos: fix error when configuring downstream dependency 2020-11-04 11:28:14 -05:00
darmac
44d406a1aa
Add new package: abi-compliance-checker (#18737)
* Add new package: abi-compliance-checker

* refine dependencies

* change exuberant-ctags to universal-ctags
2020-11-04 14:37:24 +01:00
Andrew W Elble
efb26bb14f
libusb: disable udev (#19713)
* libusb: disable udev

spack has no libudev/systemd package currently

* convert to AutotoolsPackage

* remove spack import
2020-11-03 16:47:38 -06:00
Andrew W Elble
ddd2aa0ffc
sirius,spfft: fix defaults for amdgpu_target to be str, not tuple (#19660) 2020-11-03 12:43:16 -06:00
Glenn Johnson
6bcb7128e6
Regenerate patch for gate to include SGE script (#19663)
The previous patch left out the SGE.script file.
2020-11-03 12:42:40 -06:00
Glenn Johnson
4ba7ad5162
New package - gatepet2stir (#19664) 2020-11-03 12:41:47 -06:00
Sreenivasa Murthy Kolam
e93ac1a8bd
bump up hsakmt-roct ,hsa-rocr-dev,llvm-amdgpu version for 3.9.0 release (#19668)
* bump up version for 3.9.0 release

* update version of rocminfo for rocm-3.9.0

* bump up rocm-cmake version for rocm-3.9.0

* bump up rocm-smi and rocmdevice-libs for 3.9.0

* bumpup comgr version for rocm_ 3.9.0

* bump rocm-clang-ocl for rocm-3.9.0

* bump hipify-clang for rocm-3.9.0
2020-11-03 12:39:40 -06:00
Andrew W Elble
886ae9a83f
speexdsp: fix link dependency on FFT library (#19714)
without this, the library does not have a dependency
on the fft lib it was built with.
2020-11-03 12:36:24 -06:00
Desmond
95d63afa58
Package/py json get (#19689)
* py-json-get: new package at 1.1.1

* py-json-get: new package at 1.1.1

Co-authored-by: las_djorton <las_djorton@build.las.iastate.edu>
2020-11-03 12:35:26 -06:00
Andrew W Elble
b9d12c93ef
disable tests to fix build. (#19697) 2020-11-03 12:34:17 -06:00
mic84
001f90f411
amrex: new version 20.11 (#19691)
* amrex: new version 20.11

* Fix formatting issues
2020-11-03 12:33:45 -06:00
Geoffrey Oxberry
2c511a7dd0
new package: fprettify 0.3.6 (#19699) 2020-11-03 12:31:29 -06:00
Andrew W Elble
11fb0e17b0
py-pygobject: new version 3.38.0 (#19709)
fix to allow Gtk and others work from 'import gi' etc.
2020-11-03 12:29:59 -06:00
darmac
cefbc39356
Add new package: libbinio (#19706) 2020-11-03 12:27:45 -06:00
darmac
ffec64ce30
Add new package: jose (#19707) 2020-11-03 12:27:22 -06:00
darmac
b7421c1476
Add new package: libdatrie (#19708) 2020-11-03 12:26:54 -06:00
Daniel Arndt
6492b9a84e
Use commit instead of branch as version for dtk 3.1-rc2 (#19712) 2020-11-03 12:25:26 -06:00
Char Aznable
859fbae4fa
Trilinos: support cuda, hwloc, Kokkos_ARCH_* and c++ std (#19119) 2020-11-03 12:07:20 -06:00
Elliot Saba
771e8b6294
[julia]: CPU names are LLVM-style, must map across (#19549)
In this case, the `zen2` architecture is unknown; Spack must use the
LLVM-style `znver2` target instead.
2020-11-03 12:04:29 -06:00
Pieter Ghysels
8cc08bd88b
Trilinos: Add STRUMPACK dependency (#19560)
* Trilinos: Add STRUMPACK dependency

* break long lines, flake8 cleanup

* Use spec['strumpack'].libs.directories[0]
instead of spec['strumpack'].prefix.lib
because libraries may be in lib or lib64.

Likewise use headers.directories[0] iso prefix.include.

Suggested by adamjstewart
2020-11-03 12:04:12 -06:00
Wouter Deconinck
cd625e5974
[dire] dire is included in pythia8@8300: so dire depends_on adjusted (#19628) 2020-11-03 12:03:48 -06:00
Geoffrey Gunter
125b80d193
range-v3: add version 0.11.0 (#19639)
* range-v3: add version 0.11.0

This release drops support for llvm-3.9 per the release notes.

https://github.com/ericniebler/range-v3/releases/tag/0.11.0

* range-v3: rename 'develop' version to 'master'

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-03 12:03:19 -06:00
Satish Balay
dc3d03ed30
superlu-dist: update to version 6.4.0 (#19682) 2020-11-03 12:02:53 -06:00
Satish Balay
5b33157a45
petsc@3.14 update superlu-dist dependency [keep it open-ended for both petsc and superlu-dist future versions] (#19686) 2020-11-03 12:01:14 -06:00
Satish Balay
294715282a
py-petsc4py: add version 3.14.0 (#19681) 2020-11-03 12:00:50 -06:00
Tim Haines
7649186988
Elfutils: added v0.182 (#19700) 2020-11-03 16:37:35 +01:00
darmac
a920ef50dd
Add new package: istio (#17829) 2020-11-03 08:19:43 -06:00
darmac
5a54e39d71
Add new package: py-boom (#18811)
* Add new package: py-boom

* change name to py-boom-boot-manager
2020-11-03 08:18:28 -06:00
dunatotatos
4637d97d41
snakemake: add upper limit to allowed python versions (#19705)
Running v3.1.2 with Python 3.7 returns a SyntaxError close to `async=True`.
2020-11-03 12:13:00 +01:00
darmac
03b7404316
Add new package: abi-dumper (#18738)
* Add new package: abi-dumper

* refine dependencies
2020-11-03 11:20:06 +01:00
Brian Van Essen
d38fdb3854
Update cuDNN packages to check Power installation (#19620)
* Updated cuDNN package to check to make sure that target directory
exists before linking it.

* Fixed flake8

* Fixed Flake8
2020-11-02 20:08:44 -06:00
Hervé Yviquel
b4ea74c11b
allow ucx to build with more recent version of gdrcopy (#19606)
* allows UCX since v1.7 to build with more recent version of gdrcopy (v2.X)

* Update var/spack/repos/builtin/packages/ucx/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-02 15:53:11 -06:00
Satish Balay
2ca894bd1e
pumi add version 2.2.5 (#19680) 2020-11-02 14:02:50 -06:00
Satish Balay
4d6c9a8f29
omega-h: add version 9.32.5 (#19679) 2020-11-02 12:50:10 -06:00
Seth R. Johnson
62eab8923e
ROOT: use native CMakePackage functions in packages.py (#19642)
* root: update to built-in CMakePackage functions

* root: Disable options from missing variants

* Remove modification of CMAKE_PROGRAM_PATH
2020-11-02 16:21:44 +00:00
Scott McMillan
f621e97f47
Fix issue with NAMD patch not applying cleanly (#19675)
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2020-11-02 10:12:15 -06:00
Tiziano Müller
acc075d79d
llvm: fix +lldb build with external ncurses on openSUSE (#19627)
fixes #19625
2020-11-02 07:39:21 -06:00
Harmen Stoppels
4fe56de72e
hip: revert using libs.directories[0] instead of prefix.lib (#19671)
Currently fails with:

 Error: NoLibrariesError: Unable to recursively locate rocm-device-libs libraries
2020-11-02 09:54:29 +01:00
eugeneswalker
b2d6c63421
hip: setup run environments (#19637)
* hip: rocminfo is a runtime requirement

* hip: +setup_run_environment, +setup_dependent_run_environment

* hip: run environment: get lib dir using libs.directories[0], not prefix.lib

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-01 21:52:06 -06:00
Adam J. Stewart
a4dd8d5582
Scalapack: don't apply patches twice (#19662) 2020-11-01 15:15:04 -08:00
Adam J. Stewart
ea8ba48a32
meson: add new version, external find support (#19658) 2020-11-01 15:33:14 -06:00
Adam J. Stewart
750027e80f
libepoxy: remove meson dependency (#19659) 2020-11-01 16:11:46 -05:00
Adam J. Stewart
854aed2571
krb5: fix build with Apple Clang 12 (#19657) 2020-11-01 16:11:40 -05:00
Hervé Yviquel
f62efe5e2e
Fix rdma-core package installation (#19643)
* add python-docutils dependency

* adds symlink to script for better compatibility if py-docutils installation

* Improve post_install phase of py-docutils

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fix review of rdma-core package

* improve formating of py-docutils package

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-01 10:08:06 -06:00
Andrew W Elble
ffd5f6b196
arborx: fix depends_on conditional (missing '+') (#19655) 2020-11-01 10:07:45 -06:00
Andrew W Elble
68ab6b252a
hpl: fix conflict directive (missing '^') (#19656) 2020-11-01 10:07:08 -06:00
Andrew W Elble
3630a8a87a
root: conflict is with a dependency (#19654) 2020-11-01 15:11:38 +01:00
Massimiliano Culpo
e4a5a06e87
gromacs: simplified use of targets (#19646) 2020-11-01 13:16:59 +01:00
Massimiliano Culpo
77fc458d29
opencv: fixed conflict firectives (missing '^') (#19645)
See https://github.com/spack/spack/pull/19501#issuecomment-718406357
2020-10-31 19:05:13 -05:00
Tim Haines
6b35324cf3
elfutils: add support for version 0.181 (#19634)
This also includes handling of the new libdebuginfod flags.
2020-10-31 13:03:04 -05:00
Jerome Soumagne
2cf1606896
mercury: update to v2.0.0 (#19635)
Remove deprecated selfforward option, on by default

Rename verbose option to debug option
2020-10-31 13:02:03 -05:00
Geoffrey Gunter
826ed5ff24
fmt: add version 7.1.0 (#19638) 2020-10-31 12:58:37 -05:00
vijay kallesh
51a9473bf8
[NEW] Added amdfftw, amdlibflame and amdscalapack recipes (#19457)
* [NEW] Added amdfftw, amdlibflame and amdscalapack recipes

Updated base fftw, libflame and netlib-scalapack recipes
to accommodate the above listed AMD Optimizing CPU Libraries
which are a set of numerical routines optimized for AMD platforms.

Updated amdblis spack recipe

amdblis:
	1. updated with amdblis 2.2 release
amdfftw:
	1. "--enable-single" now work as synonym for "--enable-float"
amdlibflame:
	1. Added enable_or_disable_threads() to set value for "--enable-multithreading" flag
Libflame:
	1. Added enable_or_disable_threads() to set value for "--enable-multithreading" flag
	2. Corrected invocation of "enable_or_disable('threads')"

Change-Id: I9da0a2c2c4e2075b7fa2776e7cfe6548a2e0b32f

* Added amd-toolchain-support as maintainers

Added team github account amd-toolchain-support
as maintainers for all the recipes owned by
AMD Optimizing CPU Libraries (AOCL) team

Change-Id: I9a7969bd48fc42cfbb88dd7bd93e0802c6138582

* Incorporated review comments

Updated packages.yaml with aocl components
Handled Flake8 test failures

Change-Id: I0a03f02d8c9f326b2434ec907958c3de3a8e18eb

* Readded accidental removal of stream recipe

amdfftw:
	1. Updated the aocc clang selection as per spack standards
fftw:
	1. Currently apple-clang section is redundant,
	already it is handled in the conflict checks.

Change-Id: Idef4a3f61717eb81f321e0cd16e7ba9619eac846

* Fix for style and docs/validate (pull_request) test

unnumbered format placeholders from {} to {0}

Change-Id: If67a3374177ec067573e5504462d257712fafc05

* changed compiler references to Spack's compiler wrapper:spack_cc, spack_cxx, spack_fc

Change-Id: I7ae29c978fff16e37773913f14c84df232499763

* Removed 'single' variant from amdfftw recipe

Instead of conflict for apple-clang + openmp, handled this senario
via below available feature:
depends_on('llvm-openmp', when='%apple-clang +openmp')

Change-Id: I701b23d83e822a500ca3aaf2b60cc9ace09e13dc

* Added relevant info for users who prefers to use single precision

Change-Id: I3506e21da428ddef5fb7895b5aaed32c2a061ef6

* Minor changes on fftw, amdfftw and libflame

amdfftw:
	1. Removed escape symbol to the single quotes
	2. Rewording the conflict line from Recommended
	to Required

fftw:
	1. Reorded to following recommended sections:
	versions, variants, dependencies, providers,
	patches

libflame:
	1. Added provides entry for 5.1.0 version

Change-Id: I21ebff99b6dfde031763154693ecb3f1fa47b476

* Removed single quote from amdfftw docstring to fix style failures

Change-Id: Ife939a5a2f5ccbc8879b730c7bebfe2fcfef9332
2020-10-31 11:57:17 -05:00
Morten Kristensen
08f4ba0c98
py-vermin: add latest version 1.0.1 (#19641) 2020-10-31 11:55:32 -05:00
Adam J. Stewart
d855ad2abb
py-pandas: add v1.1.4 (#19632) 2020-10-30 20:12:47 -04:00
Andrew W Elble
dee92f9b42
New package: gqrx (#19633)
* gqrx and dependencies

* changes

* forgot log4cpp

* misc dep fixes
2020-10-30 19:01:29 -05:00
Danny Taller
9fb2d5521d
changes to support hip build of camp (#19502)
* camp: changes to support hip build

* hip: add fallback path for external hip to detect other rocm components

Co-authored-by: Greg Becker <becker33@llnl.gov>
2020-10-30 13:33:54 -07:00
Massimiliano Culpo
458d88eaad
Make archspec a vendored dependency (#19600)
- Added archspec to the list of vendored dependencies
- Removed every reference to llnl.util.cpu
- Removed tests from Spack code base
2020-10-30 13:02:14 -07:00
Mathew Cleveland
f82e858238
update to OPPPY-0_1_4 release (#17716)
Co-authored-by: Cleveland <cleveland@lanl.gov>
2020-10-30 14:58:09 -05:00
darmac
d0ad622272
Add new package: wayland (#18826)
* Add new package: wayland

* remove duplicated dependency
2020-10-30 14:56:31 -05:00