* Travis CI: Test Python 3.8
* Fix use of deprecated cgi.escape method
* Fix version comparison
* Fix flake8 F811 change in Python 3.8
* Make flake8 happy
* Use Python 3.8 for all test categories
* Adding flecsph package
* Correcting header
* Boost version update
* Correcting Flake8 errors
* Correcting headers
* Develop preferred in FleCSI
* Removing FleCSPH branch of FleCSI
* MeshToolKit package
* formatting
* Formatting
* Correcting MSTK package
* Format
* Update var/spack/repos/builtin/packages/mstk/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/mstk/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/mstk/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/mstk/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/mstk/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/mstk/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/mstk/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/mstk/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/mstk/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/mstk/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
* Format
* Format
* Correcting package behavior
* Correcting format
* Corrections
* Update var/spack/repos/builtin/packages/mstk/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Multiline
Currently, query arguments in the Spack core are documented on the
Database._query method, where the functionality is defined.
For users of the spack python command, this makes the python builtin
method help less than ideally useful, as help(spack.store.db.query)
and help(spack.store.db.query_local) do not show relevant information.
This PR updates the doc attributes for the Database.query and
Database.query_local arguments to mirror everything after the first
line of the Database._query docstring.
* cuda: fix conflict statements for x86-64 targets
fixes#13462
This build system mixin was not updated after the support for specific
targets has been merged.
* Updated the version range of cuda that conflicts with gcc@8:
* Updated the version range of cuda that conflicts with gcc@8: for ppc64le
* Relaxed conflicts for version > 10.1
* Updated versions in conflicts
Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>
* r-dada2: new package at 1.14
* r-dada2: add gmake dependency
* Update var/spack/repos/builtin/packages/r-dada2/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* new package: py-scs
* rename
* flake8
* Update var/spack/repos/builtin/packages/py-scs/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
The `test_changed_files` in `test/cmd/flake8.py` was failing because it calls
`ArgumentParser.parse_args()` without arguments. Normally that would just
parse `sys.argv` but it seems to fail because of something in either `spack test`
or `pytest`. Call it with an empty array so that it doesn't try to touch`sys.argv`
at all.
- [x] allow `-d` spack option for `test_changed_files`
* Update the module files for cbtf-krell and openspeedshop adding man paths and needed papi and libmonitor paths.
* Update module files for new API.
* Use the same python for both develop and release branches.
* add support for static (via ~shared) and use vtk-m 1.2
* updating vtkh package to output cmake configure file and pinning it to vtkm 1.2
* trying a different cmake for vtkh
* removing problematic b
* making conduit respect ~python
* fixing ascent python logic
* update ascent package
* consistant cmake usage
* conditionally add tbb in ascent if vtkh
* applying becker fix
* adding vtkh tag
* fixing vtkh tagged version
* updating ascent and conduit for static builds
* enabling openmp
* reverting files that should not have been changed
* ascent updates
* more robust handling of variants
* fixing ascent package typo
* ascent: add optional support for mfem
* enable mfem conduit support for ascent
* add optional adios dep to conduit
* remove ver req from conduit
* ascent: remove confusing comment
* tweaks to conduit and ascent pkg recipes
* fix typo in conduit package
* pref conduit master
* fixing mfem typo for ascent
* reverting files
* adding mirror for bzip
* changing mfem to depend on conduit@master to get updated relay
* restore use of conduit 0.3.1 or greater for mfem
* set master as prefered conduit version
* allow mfem to use conduit master
* adding rover package and editing ascent
* updating vtkm cmake dep
* updates from axom
* guard ascent python support on +shared
* removing rover to simply ascent package
* add fortran variant to conduit, to allow us to turn off conduit support even when a fortran compiler is specified
* fix fortran compiler check so it can work on cray systems
* working towards cuda fix for vtkm lagrange filter
* update ascent package with more variants, and patch to avoid nvcc issue
* hdf5 flags fix for BGQ
* flake8
* extra guards for cuda patch
* conduit and ascent fortran fix
* fix patch for non cuda case
* add test variant to conduit, tweak ascent pkg
* change min ver of cmake used for ascent
* h5z-zfp package: unset FC when ~fortran
* conform to expected upstream solution
* pinning vtkm
* going back to vtkm master
* add back vtk-m variant for shared libs
* update ascent and vtkh packages
* wire up option to run tests during install
* add post install test
* add testing to ascent
* tweak for blueos xl
* add ctest output on error for run_tests
* enable ctest output on error for run_tests
* add testing of the using-with-make example
* update using-with-make examples
* typo in ascent using-with-cmake test
* fix ascent using test exe names
* more fixes, less sleep
* more fixes, less sleep ...
* remove unwired up version
* improvments suggested on review
* adding new cmake
* Update package.py
* Update package.py
* changes post cori os update
* fix cray hack
* Update package.py
Fixing 'fix'. Inconsistent variable names in conduit package
* type in spack recipes
* add zfp support to conduit
* fix indent error in conduit pkg
* move to use build phases, add sphinx rtd as dep, fix ex names in tests
* add conduit 0.5.0 release
* flake8
* remove old cray hack
* incorp feedback from review
* fix to use proper build env sig
* Fix gcc recipe for RHEL7.
+ It appears that macOS related changes to the gcc recipe broke gcc on RHEL7.
This bug manifests as `libstdc++.so: undefined reference to libiconv` when gcc
is used.
+ Fixes#13452 by moving
`--with-libiconv-prefix={0}'.format(spec['libiconv'].prefix)` into the darwin
OS section of the configuration.
+ Change qualification of `depends_on(libiconv)` to limit dependency to macOS.
* Replace deprecated 'setup_environment' with 'setup_run_environment'.
* Fix cut and paste error.
* Rename 'run_env' to just 'env'.
* Add versinos 1.13.3, 1.13.2, 1.12.12, and 1.12.11
* Replace setup_environment/setup_dependent_environment with
setup_build_environment and setup_dependent_{build, run}_environment
according to 9ddc98e
* Add dependency and patch perl-dbfile
There are two problems for the building of `perl-dbfile`:
1) this package depends on the package `berkeley-db`
2) fix the building using a patch, which locates the position of `berkeley-db` and modify the configuration file for the building
* Update and reformat the script package.py
* Simplify the patch
* Update package.py
* Update package.py
* This filter_file was difficult to maintain and is no longer needed.
* Clarify lack of support for HDF5 in serial QE.
* Update QE and HDF5 conflicts based on user feedback.
* Add Lizard (LZ5)
Add a new package for Lizard, formerly LZ5, a very fast compressor
and decompressor library.
* c-blosc2: use external lizard
Use an external Lizard (LZ5) dependency and add missing
"when="s for other compressor dependents.
* Fixes for libbeagle
This PR fixes a couple of issues with the libbeagle package.
- Use args.append('--with-cuda=%s' % self.spec['cuda'].prefix)
- Disable the default of compiling with -march=native as Spack now
inserts architecture specific flags
- Set BEAST_LIB in the beast1 package not in libbeagle.
* Use new setup_run_environment method
