Todd Gamblin
c898b9db04
Merge pull request #1188 from epfl-scitas/packages/py-numpy
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RPATH for blas in py numpy
2016-07-17 21:20:39 -07:00
Todd Gamblin
117743863e
Merge pull request #1252 from hartzell/patch-5
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Fix format of explanation of an example & question
2016-07-17 21:20:02 -07:00
Todd Gamblin
28ce08b9e2
Merge pull request #1258 from eschnett/eschnett/openmpi-2.0.0
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Update to OpenMPI 2.0.0
2016-07-17 21:01:21 -07:00
Todd Gamblin
0e8bf79fa4
Merge pull request #1240 from epfl-scitas/truncated_documentation
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doc : fixes #1239
2016-07-17 20:59:36 -07:00
alalazo
dc671ad037
docs : substituted None with empty cell
2016-07-17 22:17:52 +02:00
Denis Davydov
1bd3a702c9
mumps: flake8 fixes
2016-07-16 15:14:06 +02:00
Denis Davydov
561748a063
netlib-scalapack: flake8 fixes
2016-07-16 08:03:54 +02:00
Denis Davydov
9ea4f80f15
flake8 fixes
2016-07-16 07:58:51 +02:00
Denis Davydov
0752eccfa5
mumps: don't hardcode blas name; remove unused depends_on(lapack)
2016-07-16 07:38:42 +02:00
Denis Davydov
6175ce7559
netlib-scalapack: make sure Spack's Lapack is used
2016-07-16 07:37:38 +02:00
Denis Davydov
987fb137f9
trilinos: don't hardcode blas/lapack names
2016-07-16 07:31:38 +02:00
Denis Davydov
514c61b8fe
hypre: don't hardcode blas/lapack/mpi; optionally run tests
2016-07-16 07:28:31 +02:00
Denis Davydov
992250ddea
add to_lib_name() to get library name from a path
2016-07-16 07:24:05 +02:00
Michael Kuhn
d61190c3ff
Explicitly request zmpi in module blacklist test.
2016-07-16 00:48:04 +02:00
Denis Davydov
96e9dbca08
suite-sparse: enable TBB and fix Blas/Lapack libs
2016-07-16 00:33:39 +02:00
Erik Schnetter
5a1ed51dcd
Correct indentation
2016-07-15 18:10:33 -04:00
becker33
63101e9914
Merge pull request #1261 from adamjstewart/features/create-deptype
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Automatically add deptype to newly created packages
2016-07-15 15:10:10 -07:00
Adam J. Stewart
8c1cc44522
Automatically add deptype to newly created packages
2016-07-15 16:43:25 -05:00
becker33
36f818b9fb
Merge pull request #1246 from suraia/improve-shell-integration
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Improve shell integration.
2016-07-15 14:23:51 -07:00
becker33
c0be585b67
Merge pull request #1168 from epfl-scitas/packages/gts
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gts : added package
2016-07-15 14:07:59 -07:00
becker33
656b2d562f
Merge pull request #1177 from epfl-scitas/packages/swiftsim_and_metis
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swiftsim : fixed configuration for metis
2016-07-15 14:05:28 -07:00
becker33
f761130343
Merge pull request #1187 from paulhopkins/bugfix/python-updates
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Bugfix/python updates
2016-07-15 14:04:46 -07:00
becker33
f1d85ac2e9
Merge pull request #1227 from glennpj/ggvis
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New package - r-ggvis
2016-07-15 14:00:15 -07:00
becker33
1585c014d7
Merge pull request #1259 from adamjstewart/fixes/run-flake8
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Updates to run-flake8 test
2016-07-15 13:55:01 -07:00
becker33
37ce4108ce
Merge pull request #1254 from mdevlin1/features/hmmer
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add HMMER package
2016-07-15 13:52:56 -07:00
becker33
e822257565
Merge pull request #1251 from hartzell/patch-4
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Minor typo fix
2016-07-15 13:51:02 -07:00
Adam J. Stewart
a4a2f179c7
Updates to run-flake8 test
2016-07-15 12:11:41 -05:00
Erik Schnetter
4663288b49
Update to OpenMPI 2.0.0
2016-07-15 13:00:48 -04:00
George Hartzell
64b1bafd41
Make flake8 happy with .../jdk/package.py
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My PR for adding a new jdk version failed its
travis run because of existing flake8 violoations.
This package cleans them up.
I'm not particularly pythonic, but most of the complaints were
obvious. HOWEVER, I'm not particularly confident about handling
long lines by taking an flake8 exception comment onto the end.
Feedback welcome...
2016-07-15 12:39:40 -04:00
Mitchell Devlin
5f1b6f000d
add HMMER package
2016-07-15 11:03:57 -05:00
Denis Davydov
b29b7595dd
mkl: add info on interface and threading layers to the docstring
2016-07-15 17:35:10 +02:00
alalazo
1f3cb2b93c
Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh
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Conflicts:
lib/spack/spack/cmd/module.py
2016-07-15 10:37:27 +02:00
Todd Gamblin
077848fc0b
Merge pull request #378 from mathstuf/dep-types
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dependency types
2016-07-15 00:29:16 -07:00
Todd Gamblin
f3e9588457
Fix package name bug.
2016-07-14 23:15:54 -07:00
Gregory Becker
487ec2aff1
added py-pydatalog package
2016-07-14 23:12:35 -07:00
Todd Gamblin
b8e2799700
Add GNU Prolog package.
2016-07-14 14:38:30 -07:00
Ben Boeckel
5d152edcaf
spec: assign namespaces to the full dependency DAG
2016-07-14 16:33:48 -04:00
Ben Boeckel
faa3d43d9c
package: mention the package that is no concrete
2016-07-14 16:33:38 -04:00
Ben Boeckel
a0584c78a8
foam-extend, sundials: add cmake as a builddep
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The sundials doesn't use CMake directly, but it is referenced in the
patch step. I suspect it calls CMake somewhere else in its build system.
2016-07-14 16:21:47 -04:00
Ben Boeckel
d71a12438b
cantera: use nolink for python module dependencies
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Unsure about this, but this is probably true.
2016-07-14 16:21:47 -04:00
Ben Boeckel
39aef5fc00
lua: bring in run deps of build and run deps
2016-07-14 16:21:47 -04:00
Ben Boeckel
a82385cdae
R: look only at run dependencies of build and run deps
2016-07-14 16:21:46 -04:00
Ben Boeckel
0ca1a481a3
python: setup the dependent environment properly
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We want the run dependencies of all build and run dependencies of the
current package.
2016-07-14 16:21:46 -04:00
Ben Boeckel
ac1701ae29
msgpack-c: add missing dependency on cmake
2016-07-14 16:21:46 -04:00
Ben Boeckel
77965ce5bf
py-matplotlib: require py-setuptools to build
2016-07-14 16:21:46 -04:00
Ben Boeckel
6fd45520da
deptypes: mark deptypes in packages
2016-07-14 16:21:46 -04:00
Ben Boeckel
45c675fe7f
spack: introduce dependency types
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deptypes: allow for different queries
For things like Python modules, they are required for the build and
runtime, but rather than adding a new parameter for what to query across
the dependency DAG, just expose the recursive query parameter.
2016-07-14 16:21:46 -04:00
Ben Boeckel
bae97d17d0
test: use file:// url for git repos
2016-07-14 16:21:45 -04:00
Ben Boeckel
bdf82246f7
darwin: explicitly use the 'when=' kwarg
2016-07-14 16:21:45 -04:00
Ben Boeckel
1ae43b3405
doxygen: add missing import
2016-07-14 16:21:45 -04:00
