Commit graph

5863 commits

Author SHA1 Message Date
serbanmaerean
d78a35bb54 spectrum-mpi: Add new package file for external package (#3005)
* spectrum-mpi: Add new package file for external package

IBM Spectrum MPI is a commercial implementation of MPI based on
OpenMPI.  It is usually install in /opt/ibm/spectrum_mpi.

Users need to add the Spectrum MPI package in their packages.yaml
file as follows:

packages:
    spectrum-mpi:
        version: ['10.1.0.2']
        paths:
            spectrum-mpi@10.1.0.2: /opt/ibm/spectrum_mpi/
        buildable: False

    all:
        providers:
            mpi: [spectrum-mpi@10.1.0.2]

* spectrum-mpi: Added license files and removed the versions

No need for versions as the package is external.

* spectrum-mpi: Remove extraneous defines

Keep only the defines that other MPI implementation define in their
package file:
    self.spec.mpicc
    self.spec.mpicxx
    self.spec.mpif77
    self.spec.mpifc
2017-02-06 10:53:53 -08:00
Brian Van Essen
ffd582b2f6 Elemental (#2991)
* Add a package for the Elemental distributed linear algebra library.
2017-02-06 00:04:41 -08:00
Gregory Lee
158a1b9c36 fix OMPT support in Archer (#3035) 2017-02-05 23:34:38 -08:00
Nicolas Richart
7c09ad5305 Boostrapping the lammps package (#3032)
* First commit for the lammps package
* reviewed by adamjstewart and davydden
2017-02-05 19:34:53 -08:00
sknigh
dfff1f5cf4 Changed spark URL, Added version 2.0.2, 2.1.0 (#3027) 2017-02-05 15:56:34 -08:00
George Hartzell
d1c7f9c8bd Add a package for hunspell (#3029)
Add a package for the hunspell spelling checker.

This was created by `spack create`, trimmed down, and tested on CentOS 7.
2017-02-05 15:55:55 -08:00
健美猫
47f9096073 Use the official Maven site. (#3034) 2017-02-05 15:49:05 -08:00
Gregory Lee
ccb07dc25e added archer OpenMP race detector and its deps (#3030) 2017-02-04 15:42:22 -08:00
becker33
968199de7d Fix spec hash printing (#2941)
- Fix format printing to match command line for hashes and full name formats
- Update spack graph to use new format
- Changed format string signifier for hashes from `$#` to `$/`
2017-02-03 18:27:34 -08:00
Carlos Bederián
5aefaa6ffe Add FFTW 2.1.5 (#2987) 2017-02-03 18:26:27 -08:00
Carlos Bederián
384698157a MKL: Provide scalapack (#2974) 2017-02-03 18:18:31 -08:00
Erik Schnetter
4c1c284e56 New package “es” (extensible shell) (#3009) 2017-02-03 18:09:25 -08:00
George Hartzell
5e2827433c Update go to v1.7.5 (#3023)
Update the go package to v1.7.5.

- This release no longer needs the time-test patch (it's been merged upstream).
- This release still seems to need the cgo-testcshared patch.
- Also add a comment about environment set up that I need to build it successfully on a very large server.

Tested on CentOS 7.
2017-02-03 18:09:01 -08:00
健美猫
864670c0ab Retrive CUDA installers from Internet. (#3012) 2017-02-03 18:07:54 -08:00
sknigh
24553c12bb Flex and Glib builds are dependent on m4 (#3022) 2017-02-03 17:19:23 -08:00
George Hartzell
c456dfb60f Make module autoload warnings configurable (#2763)
Modules generated by the module creation machinery currently print out
a notice that warnts the user that things are being autoloaded.  In
some situations those warnings are problematic.  See #2754 for
discussion.

This is a first cut at optionally disabling the warning messages:

- adds a helper tothe EnvModule base class that encapsulates the
  config file variable;
- adds a method to the base class that provides a default (empty)
  code fragment for generating a warning message;
- passes the warning fragment into the bit that formats the autoload
  string;
- adds specialized autload_warner() methods in the tcl and lmod
  subclasses;; and finally
- touches up the autoload_format strings in the specialized classes.
2017-02-03 15:53:30 -08:00
George Hartzell
b28d8345ec Force particular repo to increase predictability (#2746)
The repository used by the texlive installer defaults to a redirector
that sends one off to various URLs depending on <fill in the blank>.

This is problematic because all of the mirrors do not update in
synchrony and bad tarballs often hang around for a while.

This leads to problems that are particularly hard to diagnose because
you're likely to end up using a different repo the next time around.

This commit constraints the package to a particular, mainstream,
repository.  It's not fast, but it's consistent and usually correct.

It also updates the installer digest, because no day is complete
without updating it at least (sigh) once.
2017-02-03 15:44:26 -08:00
George Hartzell
5a836fd06e Blacklist implicit packages for modulefile generation (#2603)
Add the ability to the modules generation process to blacklist
packages that were installed implicitly.  One can still whitelist
modules that were installed implicitly.

This changes adds a `blacklist_implicts` boolean as a peer to the
`whitelist` and `blacklist` arrays, e.g.:

```
modules:
  enable::
    - lmod
  lmod:
    whitelist:
      - 'lua'
      - 'py-setuptools'
    blacklist:
      -  '%gcc@4.8.3'
    blacklist_implicits: True
```

It adds a small helper in `spec.py` and then touches up the package
filtering code in `modules.py`.
2017-02-03 15:42:46 -08:00
George Hartzell
acb9281dbf Different versions of cmake need diff vers of openssl (#2993)
* Different versions of cmake need diff vers of openssl.  See Issue https://github.com/LLNL/spack/issues/2990 for background.

Versions of cmake through 3.6.9 seem to need OpenSSL up to 1.0.99.  Later
versions can use the current release (thanks to @citibeth for
[digging up details](https://cmake.org/pipermail/cmake/2016-November/064631.html)).

@davydden suggested this change.

Without it I *am not* able to build `cmake@3.6.1` on CentOS 7 and I *am*
able to build `cmake@3.7.2`.

Tested with `cmake@3.7.2` and `cmake@3.6.1` on CentOS 7.
With this change I am able to build both `cmake@3.6.1` and `cmake@3.7.2`
on CentOS 7.
2017-02-03 14:35:16 -08:00
George Hartzell
6c1b19f394 Ocaml fails as an AutotoolsPackage (#2995)
Switch the ocaml install bit back to being a Package with its own little install method.

This fix allows me to build Unison on CentOS 7.
2017-02-03 14:22:50 -08:00
George Hartzell
10d36ee343 Fetch tarballs from ant archive dir. (#2997)
There was a new release of Ant (1.9.8) which led to the v1.9.7
tarball disappearing.

This changes the URL to Ant's archive dir, which seems to contain
*everything* including the two current releases (1.9.8 and 1.10.0)

It adds a digest for 1.9.8.

It adds and comments out a digest for 1.10.0 (which requires Java 8),
as I have not tested it.
2017-02-03 14:21:14 -08:00
Mayeul d'Avezac
d7c816386a Add new versions of catch (#3016) 2017-02-03 14:20:41 -08:00
George Hartzell
0929b23d53 Update git package to include 2.11.1 (#3020)
Add git v2.11.1 digest.

Built and lightly tested on CentOS 7.
2017-02-03 14:17:33 -08:00
Carlos Bederián
3d67bf46ba Update Tcl/Tk to 8.6.6 (#3002) 2017-02-03 14:15:15 -08:00
Howard Pritchard
0cdbd74b82 openmpi (#2988)
We just released 2.0.2 yesterday, so add in that release for
spack.  Don't need the PMI patch for this release.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-02-03 14:10:44 -08:00
Adam J. Stewart
dbb18df3f2 Add latest stable Perl release (#2969) 2017-02-03 14:10:08 -08:00
Tom Scogland
95c04f3ab1 llvm: add 3.9.1, only download necessary resources (#3015)
* llvm: add 3.9.1, only download necessary resources

* sacrifice some spaces on the altar of flake8 the vengeful and merciless
2017-02-03 14:04:36 -08:00
健美猫
a08ccbedee Patch OpenMPI 2.0.x to fix pmi_opcaddy_t_class issue. (#2962) 2017-01-31 14:52:38 -05:00
serbanmaerean
8275b44715 Change default fflags for XL compiler to only "-qzerosize" (#2966) 2017-01-31 14:51:05 -05:00
Henrik Bengtsson
4f297f4336 R: Using official cloud URL for CRAN (#2956)
cran.r-project.org runs on a single old-school server in Austria
and could potentially be overloaded if "everyone" used it.

cloud.r-project.org is a cloud-based repository that "automatic redirection to servers worldwide [...]", cf. https://cran.r-project.org/mirrors.html.

I assume, that cloud.* can be scale up as needed. Out of the official CRAN mirror, this should be the safest one to pick if a static CRAN mirror is needed.
2017-01-31 14:47:20 -05:00
Adam J. Stewart
41c77d7429 Add installcheck phase to AutotoolsPackage (#2863)
* Add installcheck phase to AutotoolsPackage
* Update installcheck phase with new callbacks API
* build_directory has been converted to a property
2017-01-31 14:35:38 -05:00
Gregory Lee
7d279e06a0 Merge pull request #2964 from Zzzoom/fftw_add_sse2
FFTW: Add SSE2 support to x86_64 target
2017-01-31 09:48:47 -08:00
Adam J. Stewart
2ac0bcfcb0 Add latest version of Xorg util-macros (#2965) 2017-01-31 08:30:08 -08:00
Henrik Bengtsson
6e729bc333 DOCS: Examplify what file types are automatically extracted (#2955) 2017-01-31 08:26:19 -08:00
Adam J. Stewart
123f057089 Refactor Spack's URL parsing commands (#2938)
* Replace `spack urls` and `spack url-parse` with `spack url`
* Allow spack url list to only list incorrect parsings
* Add spack url test reporting
* Add unit tests for new URL commands
2017-01-31 11:14:52 -05:00
Denis Davydov
2e81fe4fb3 openssl: add extra url to download old versions (#2935) 2017-01-31 10:51:26 -05:00
Massimiliano Culpo
2babe4e4ff removed call syntax from property fixes #2944 (#2945) 2017-01-31 10:48:57 -05:00
健美猫
d46a1eadcd Replace FTP retrieval URLs with HTTP/HTTPS serving packages with identical checksum. (#2958) 2017-01-31 09:56:35 -05:00
Adam J. Stewart
0c0a1fdedc Add several new R packages (#2952)
* Add several new R packages

* Add a few more R packages

* Update more versions

* Convert Package to RPackage

* Add a few more packages

* Add missing dependencies
2017-01-31 09:54:34 -05:00
Massimiliano Culpo
19cf7a2833 libmng: fix trying to run configure on an already configured directory fixes #2959 (#2961) 2017-01-31 09:49:29 -05:00
Carlos Bederián
617786707f FFTW: Add SSE2 support to x86_64 target 2017-01-30 18:17:36 -03:00
Adam J. Stewart
75763bb8e3 Make OpenSSL tests optional (#2939)
* Make OpenSSL tests optional

* Add version constraint to Perl dependency in OpenSSL
2017-01-27 11:38:21 -08:00
becker33
58a4c5c14d Fix ambiguous hash message generation. (#2940)
* Fix ambiguous hash message generation. Engineering fix
2017-01-27 11:37:21 -08:00
Denis Davydov
aa7c5d1115 mumps: fix compilation with MKL (#2936) 2017-01-27 11:32:25 -08:00
Adam J. Stewart
6158115ca8 Standardize argparse help messages (#2847) 2017-01-26 02:33:01 -08:00
Adam J. Stewart
c7a1328326 Add missing dependencies to VizGlow package (#2581)
* Add missing dependencies to VizGlow package

* Use a version-specific URL for xterm
2017-01-26 02:30:18 -08:00
Todd Gamblin
ffb8aaa3f3 Packaging docs for MPI (#2838)
* Add MPI docs to packaging guide and simplify packaging guide TOC a bit.
2017-01-26 02:29:31 -08:00
Massimiliano Culpo
81a5146b1d AutotoolsPackage: minor improvements (#2859)
* AutotoolsPackage: added configure_directory to permit build out of source. The configure script executable is now invoked with an absolute path. Modified a few packages accordingly.

* build_systems: functions returning directories are now properties

* build_systems: fixed issues with tcl and tk

* AutotoolsPackage: reworked recipe for autoreconf
2017-01-26 02:27:15 -08:00
Todd Gamblin
3b2124af6a Turn off codecov comments (use only statuses) 2017-01-26 02:21:26 -08:00
Todd Gamblin
a5700a8888 Use codecov for coverage instead of coveralls (#2933)
* Switch from coveralls to codecov

- Add .codecov.yml, simplify .travis.yml
- Add codecov badge to README.md

* Add tests for spack graph.
2017-01-26 02:19:35 -08:00