Commit graph

29544 commits

Author SHA1 Message Date
iarspider
83d55daae5
New package: cepgen (#32754) 2022-09-22 08:47:44 -07:00
Andrey Alekseenko
0ddbb92ae3
GROMACS: update CMake version, and a couple more fixes (#32748)
- GROMACS is not an acronym (https://www.gromacs.org/about.html).
- GROMACS switched to LGPL a long time ago, so let's mention it first.
- CMake version required for `main` has been bumped to 3.18
  (https://gitlab.com/gromacs/gromacs/-/merge_requests/3093)
- `-DGMX_USE_OPENCL` flag was used before 2021; for newer versions,
  `-DGMX_GPU=OpenCL` is enough.
2022-09-22 07:10:30 -05:00
Tamara Dahlgren
54d06fca79
Add hash hint to multi-spec message (#32652) 2022-09-22 09:18:43 +02:00
Sreenivasa Murthy Kolam
457daf4be6
Add new variants (OPENCL and HIP) for MIVisionX recipe and their dependencies correctly. (#32486)
* add the 2 variants OPENCL and HIP and their dependencies correctly
for OPENCL - rocm-opencl, miopengemm and miopen-opencl
for HIP - miopen-hip
Earlier this was adding both the dependencies -miopen-hip and miopen-opencl
for both the backends which did not seem correct.
Also corrected the miopen-hip or miopen-opencl config.h  in patch() depending on the
backend
Also added libjpeg-turbo as it is required for building ROCAl .
the AMDRpp is still required for ROCAL inclusion but it currently does not build
AMDRpp will be added as a new spack recipe and the mivisionx will refer to that as a
dependency in future.

* fix style errors
* bump up the version for 5.2.3 release. tested +opencl, +hip and ~hip~opencl(cpu backend)

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-21 16:54:40 -07:00
renjithravindrankannath
c6d7557484
Update the version details for rccl, rvs, rocm-tensile rocm-5.2.3 release (#32741)
* ROCm 5.2.3 release changes
* Patch file for rccl

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-21 15:48:23 -07:00
Sreenivasa Murthy Kolam
e7f1f1af30
Update the version details for rocm-5.2.3 release (#32733)
* Bump up the version for rocm-5.2.3 release
* revert miopen-hip till the tag for mlirmiopen for 5.2.3 is available
2022-09-21 14:40:40 -07:00
Massimiliano Culpo
7e01a1252a
Allow conditional variants as first values in a variant directive (#32740) 2022-09-21 19:22:58 +02:00
Robert Pavel
d07b200b67
Spackage for mlperf's OpenCatalyst (#32553)
* Initial opencatalyst proxy app spackage

Initial spackage for opencatalyst proxy app. Includes exposing of
versions in dependency spackages

* Verified Functionality and Spack Style

Verified build of mlperf-opencatalyst and fixed lingering spack style
issues

* Making requested changes to py-ocp

Making requested changed to spackage

* Further Requested Changes
2022-09-21 10:45:48 -06:00
Vanessasaurus
663f55825d
flux-core: add v0.43.0 (#32744)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2022-09-21 18:26:41 +02:00
Vanessasaurus
dc214edc9c
flux-sched: add v0.24.0 (#32743)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2022-09-21 18:26:09 +02:00
Manuela Kuhn
36df918e7d
py-bleach: add 5.0.1 (#32727) 2022-09-21 09:48:16 -05:00
Laurent Aphecetche
874364bf4d
vgm: add v5-0 (#32742) 2022-09-21 15:38:52 +02:00
Tamara Dahlgren
f12ececee5
Docs: Update pipeline ci rebuild to add --tests (plus fixed typos) (#32048) 2022-09-21 14:23:58 +02:00
Garth N. Wells
1313bc99a6
dolfinx: fix depends_on directive missing a version (#32730) 2022-09-21 10:12:22 +02:00
Adam J. Stewart
e45bc8440b
pango: harfbuzz+coretext required on macOS (#32637) 2022-09-20 17:57:50 -06:00
Paulo Baraldi Mausbach
16692b802b
New python package support: py-river (#32718) 2022-09-20 15:47:08 -05:00
John W. Parent
fd66f55e3c
cmake: add v3.24.1 and v3.24.2 (#32654) 2022-09-20 11:24:16 -07:00
Wouter Deconinck
4b66364b06
gaudi: @:36 fails to build with fmt@9: (#32699)
Since fmt@9.0.0 and 9.1.0 were [added](6c4acfbf83) to spack a few days ago, gaudi fails to compile with default concretization. Since gaudi developers are usually paying attention to new versions of dependencies, I'm going to assume (perhaps optimistically) that the next bugfix version of gaudi will fix this (even though the issue has not been reported yet to Gaudi; I posted on the [key4hep public mirror](https://github.com/key4hep/Gaudi/issues/1)).
2022-09-20 11:20:55 -07:00
HELICS-bot
692f1d0e75
helics: Add version 3.3.0 (#32682)
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Ryan Mast <3969255+nightlark@users.noreply.github.com>
2022-09-20 11:53:59 -06:00
Stephanie Labasan Brink
2f796e1119
variorum: new versions 0.5 and 0.6, remove log option (#32731) 2022-09-20 11:46:04 -06:00
iarspider
ac459df2b6
Add fixed version 0.7.0 to cpu-features (#32726)
* Add fixed version 0.7.0 to cpu-features
* [@spackbot] updating style on behalf of iarspider

Co-authored-by: iarspider <iarspider@users.noreply.github.com>
2022-09-20 10:40:39 -07:00
Joel Falcou
d8e566d554
Update EVE to 2022.09 (#32729) 2022-09-20 10:35:39 -07:00
Luke Diorio-Toth
cc0e7c87c1
new version (py-multiqc v1.13) + new package (py-rich-click) (#32719)
* started updating multiqc package

* working now

* added py-rich-click

* fixed style

* changed py-matlibplot versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-networkx versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-coloredlogs versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed python versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-markdown versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-pyyaml requirement

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-requests requirements

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* changed py-spectra requirements

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-20 11:14:01 -06:00
Manuela Kuhn
757a2db741
py-python-gitlab: add 3.9.0 (#32723) 2022-09-20 10:41:53 -06:00
Manuela Kuhn
8409ec0f21
py-annexremote: add 1.6.0 (#32725) 2022-09-20 10:06:03 -06:00
Manuela Kuhn
0d3a4d799a
py-pybids: add 0.15.3 (#32722) 2022-09-20 11:03:33 -05:00
Manuela Kuhn
578d06a86a
py-nibabel: add 4.0.2 (#32721) 2022-09-20 11:01:06 -05:00
dependabot[bot]
e656b4659a
build(deps): bump codecov/codecov-action from 3.1.0 to 3.1.1 (#32717)
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.1.0 to 3.1.1.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/master/CHANGELOG.md)
- [Commits](81cd2dc814...d9f34f8cd5)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-09-20 14:03:47 +02:00
natshineman
3b273e263b
osu-micro-benchmarks: add v6.1 (#32692) 2022-09-20 12:57:59 +02:00
Jim Galarowicz
24245be85a
must: fix incorrect cmake argument (#32671) 2022-09-20 12:45:15 +02:00
Massimiliano Culpo
71434d8b9d intel-oneapi-itac: remove UTF-8 character in docstring
This character causes random failures in CI for Python 2.7
2022-09-20 11:02:10 +02:00
iarspider
2518a55105
Add checksum for py-nbconvert 6.5.1 (#32646) 2022-09-20 09:31:48 +02:00
Jen Herting
637a95c67f
py-h5py: add v3.7.0 (#32578) 2022-09-20 09:30:36 +02:00
Manuela Kuhn
7e00852278
py-bids-validator: add 1.9.8 (#32712) 2022-09-20 01:05:45 -06:00
Gregory Lee
9b9691233a
stat: add v4.2.1 (#32691) 2022-09-20 08:43:36 +02:00
Sreenivasa Murthy Kolam
0405ed6e9b
Bump up the version for rocm-5.2.1 release (#32195)
* Bump up the version for rocm-5.2.1-initial commit
* Bump up the version for rocm-5.2.1 release
* Bump up the version for rocm-5.2.1 release
* correct the PROF_API_HEADER_PATH to include
* Bump up the version of rocm-openmp-extras for rocm-5.2.1 release
* bump up the version of rocwmma for 5.2.1
2022-09-19 21:13:38 -06:00
Jim Edwards
60997a7bc3
add pio2_5_9 to spack package (#32716) 2022-09-19 15:45:40 -06:00
Adam J. Stewart
5479f26aa6
py-pandas: add v1.5.0 (#32714) 2022-09-19 15:09:52 -06:00
kent-cheung-arm
8a7343f97b
Added variant to ensure Arm Forge license acceptance (#32635)
* Added variant to ensure Arm Forge license acceptance
* Update var/spack/repos/builtin/packages/arm-forge/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-19 13:45:43 -07:00
Wouter Deconinck
5b26df8f64
imagemagick: new variant ghostscript (#32450)
* imagemagick: new variant ghostscript

Ghostscript adds about 75 dependencies to an installation of
imagemagick (97 without, 172 with Ghostscript). This adds a
variant (defaulting to true for backward compatibility) that
allows users to turn off Ghostscript support.

* imagemagick: be explicit when `--with-gslib`

* imagemagick: fix suggestion fail

* imagemagick: use spec.prefix.share.font

* imagemagick: default ghostscript false

* imagemagick: no need for join_path anymore

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-19 15:41:11 -05:00
Adam J. Stewart
83e66ce03e
Deprecate Python 2 support (#32615)
This PR deprecates using Spack to install [EOL Python versions](https://endoflife.date/python), including Python 2.7, 3.1–3.6. It also deprecates running Spack with Python 2.7. Going forward, we expect Spack to have the following Python support timeline.

### Running Spack

* Spack 0.18 (spring 2022): Python 2.7, 3.5–3.10
* Spack 0.19 (fall 2022): Python 2.7 (deprecated), 3.6–3.11
* Spack 0.20 (spring 2023): Python 3.6–3.11

### Building with Spack

* Spack 0.18 (spring 2022): Python 2.7, 3.1–3.10
* Spack 0.19 (fall 2022): Python 2.7, 3.1–3.6 (deprecated), 3.7–3.11
* Spack 0.20 (spring 2023): Python 3.7–3.11

This is a reboot of #28003. See #31824 for a detailed discussion of the motivation for this PR.
If you have concerns about this change, please comment on #31824.
2022-09-19 13:34:38 -07:00
Manuela Kuhn
cc78d5db36
py-datalad: add 0.17.5 (#32676)
* py-datalad: add 0.17.5

* Fix description of py-types-urllib3

* Update var/spack/repos/builtin/packages/py-datalad/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-datalad/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add colorama dependency for windows

* Fix importlib-metadata dependency

* Update var/spack/repos/builtin/packages/py-pytest/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pytest/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pytest/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Use conflict to avoid dependency duplication

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-19 15:30:34 -05:00
rsanthanam-amd
8f8205af88
NCCL should not be dependent on ROCm builds since RCCL is used instead. (#32461)
Allow the nccl flag to be specified even for ROCm builds so that NCCL kernels are included in the build.

In this case the NCCL kernels will use RCCL as the backend implementation.
2022-09-19 15:02:02 -05:00
Stephen Sachs
13d870157f
Adding intel-oneapi-itac package (#32658)
* Adding intel-oneapi-itac package
* Make black happy
* add rscohn2 as maintainer
* black prefers double quotes

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
2022-09-19 12:44:32 -07:00
Terry Cojean
5d42185698
Ginkgo: improve smoke testing (#32647)
* Ginkgo: improve smoke testing
* Fix style issues
* Pass `self.compiler.{cc,cxx}` to the smoke tests
2022-09-19 12:37:34 -07:00
Ashwin Kumar
3ffc7f4281
patch etsf-io tests (#32666)
(Patches from meisam.tabriz@mpcdf.mpg.de and smoke tests from @fangohr)
2022-09-19 12:31:59 -07:00
Wouter Deconinck
7d250c4bea
root: determine_variants cxxstd=20 support (#32673)
This is somewhat ahead of reality, but once/when external ROOT installs with cxxstd=20 are common, we will need this to pick up the correct variant.
2022-09-19 11:32:47 -07:00
snehring
edee67d96f
fasttree: updating to 2.1.11 (#32683) 2022-09-19 11:07:51 -07:00
Massimiliano Culpo
fc1e25c5e1
Don't run bootstrap on package only PRs (#32689)
* Don't run bootstrap on package only PRs

* Run bootstrap tests when ci.yaml is modified

* Test a package only PR

* Revert "Test a package only PR"

This reverts commit af96b1af60b0c31efcc9a2875ffb1a809ef97241.
2022-09-19 10:59:29 -07:00
Adam J. Stewart
bb071d03ba
py-sip: add v6.6.2 (#32695)
* py-sip: add v6.6.2

* Fix python deptype
2022-09-19 10:56:47 -07:00