Commit graph

21154 commits

Author SHA1 Message Date
Adam J. Stewart
5447dd6fb8
py-geopandas: add v0.8.2 (#21269) 2021-01-25 16:51:12 -06:00
Evan Bollig
cc006a7847
Updated gromacs for 2021.rc1. Updated GMX_GPU values (#20797) 2021-01-25 22:40:55 +01:00
ketsubouchi
ddf022d308
Itensor: Add new package (#20689) 2021-01-25 22:33:23 +01:00
albestro
3a8e04bfab
add drafts variant (#20643) 2021-01-25 22:32:13 +01:00
Thomas Madlener
4e6b5282c9
Delphes: add 3.4.3pre08 tag as version (#21221) 2021-01-25 22:29:29 +01:00
Chris Richardson
ced55fbfe7
Fenicsx: update for basix (#21220) 2021-01-25 22:29:06 +01:00
Tomoyasu Nojiri
5af2b1a933
gdl: Add libtirpc and libgeotiff depend (#21212) 2021-01-25 22:28:15 +01:00
Peter Scheibel
fd8d14f7c5
Kokkos package: rocm support (#21157) 2021-01-25 22:19:54 +01:00
Baptiste Jonglez
7bed6a7077
mxnet: Fix cuda build (#21267) 2021-01-25 22:09:56 +01:00
Axel Huebl
ef2e1bc3f7
WarpX: Increase openPMD-api Dependency (#21263) 2021-01-25 22:08:53 +01:00
Baptiste Jonglez
7d7315ba93
libsodium: Fix download URLs for older versions (#21257) 2021-01-25 22:07:53 +01:00
Adam J. Stewart
37bbe21692
expect: add v5.45.4 and fix build with Apple Clang (#21232) 2021-01-25 22:04:09 +01:00
darmac
3893ce8f71
es-shell: add missing dependency on YACC (#21234) 2021-01-25 16:32:28 +01:00
Vicente Bolea
bfa480d87d
pugixml: add v1.11.4 (#21224) 2021-01-25 14:16:50 +01:00
iarspider
2378376aa9
py-pythonsollya: new package (#21241) 2021-01-25 13:44:28 +01:00
iarspider
9d1d37c432
sollya: new package at v7.0 (#21240) 2021-01-25 09:33:56 +01:00
Adam J. Stewart
05c4506b62
py-pygeos: add v0.9 (#21243) 2021-01-25 09:25:33 +01:00
lpoirel
dd505e2269
petsc: forward variant +int64 to parmetis (#21245) 2021-01-25 08:41:29 +01:00
ketsubouchi
b2f89f8157
imake: add run dependency to xorg-cf-files (#21251) 2021-01-25 08:18:06 +01:00
Pariksheet Nanda
91db8c5234
picard: add v2.24.0 (#21249) (#21250) 2021-01-25 08:12:58 +01:00
Phil Carns
f269b4d7c1
opa-psm2: add v11.2.185 (#21208)
- also update to reflect Cornelis Networks as source maintainer rather Intel
- also replace explicit install prefix patch with edit step file filter
2021-01-25 07:33:59 +01:00
iarspider
577f6e8ade
New package: mpfi (#21238) 2021-01-24 17:54:52 -06:00
Glenn Johnson
cf35661d3c
Updates of R CRAN packages (#21223) 2021-01-24 17:54:25 -06:00
lpoirel
88cafacd09
petsc: add a +mkl-pardiso variant (#21219)
* petsc: add a +mkl-pardiso variant

mkl_pardiso solver is distributed with intel-mkl

* petsc: depend on mkl instead of intel-mkl

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-24 12:09:35 -06:00
iarspider
8f45b27836
New package: py-bigfloat (#21239)
* New package: py-bigfloat

* Changes from review
2021-01-23 16:27:42 -06:00
iarspider
e791725180
New package: fplll (#21236)
* New package: fplll

* Change from review
2021-01-23 16:26:48 -06:00
bryanherman
5a2fe8add3
Fix git svn modules (#21169)
* added Git run env to support svn variant modules

* perl-alien-svn needs arp-util to be link

* Update var/spack/repos/builtin/packages/git/package.py
2021-01-23 10:33:39 -05:00
Pieter Ghysels
dba6a26920
Add strumpack v5.1.0, add support for ROCm/HIP (#21203) 2021-01-23 09:31:23 +01:00
Tom Scogland
12eb4a146f
use module and package flags to get more correct mypy behavior (#21225)
The first of my two upstream patches to mypy landed in the 0.800 tag that was released this morning, which lets us use module and package parameters with a .mypy.ini file that has a files key. This uses those parameters to check all of spack in style, but leaves the packages out for now since they are still very, very broken. If no package has been modified, the packages are not checked, but if one has they are. Includes some fixes for the log tests since they were not type checking.

Should also fix all failures related to "duplicate module named package" errors.

Hopefully the next drop of mypy will include my other patch so we can just specify the modules and packages in the config file to begin with, but for now we'll have to live with a bare mypy doing a check of the libs but not the packages.

* use module and package flags to check packages properly
* stop checking package files, use package flag for libs

The packages are not type checkable yet, need to finish out another PR
before they can be.  The previous commit also didn't check the libraries
properly, this one does.
2021-01-22 16:24:15 -08:00
Nicholas Sly
82ada16668
Add flang variant to llvm package. (#21229)
Co-authored-by: sly <sly@lanl.gov>
2021-01-22 15:39:44 -08:00
Baptiste Jonglez
49f0e9640d
cuda: add installation workaround for version 10.1.243 on ppc64le (#21200)
Fixes #21170
2021-01-22 14:27:14 -08:00
arjun-raj-kuppala
cdb9b10e27
Bump up rocm version 4.0.0: rocm-gdb and mivisionx (#21137) 2021-01-22 18:04:01 +01:00
ketsubouchi
2d6fea86d6
py-pygit2, libgit2: add new versions (#21160) 2021-01-22 09:59:01 -06:00
AMD Toolchain Support
2c1bb64594
Added @property stdcxx_libs to return -lstdc++ for AOCC compiler (#21145) 2021-01-22 09:58:04 -06:00
Chuck Atkins
14f6d64edf
adios2: Fix dependency issues (#21211)
- Typo in the SZ version (:ver should have been ver:)
- Patch to fix python dependency when testing is disabled
2021-01-22 10:31:21 -05:00
René Widera
1026eb2186
isaac-server: add v1.5.1 and v1.5.2 (#21217)
Add latest releases of isaac-server and adjust jansson requirements.
2021-01-22 15:30:57 +01:00
Adam J. Stewart
99e36bcef6
py-scikit-learn: add v0.24.1 (#21158) 2021-01-22 14:32:23 +01:00
Adam J. Stewart
551105749b
py-pandas: add v1.2.1 (#21176) 2021-01-22 14:28:24 +01:00
Adam J. Stewart
ccb5cc50f7
TensorFlow: add v2.4.1 (#21205) 2021-01-22 14:12:37 +01:00
Dr. Christian Tacke
1961dc5f51
xrootd: add v4.12.6, v5.0.3; drop preferred (#21199)
Add version 4.12.6, 5.0.3

I think, the preferred was there to keep version 4.
But that's why we have spack, because people can install
whatever version they want.

And root has a properly versioned dependency.
2021-01-22 14:10:54 +01:00
Jen Herting
f50f67f4db
py-memprof: new package (#20730) 2021-01-22 14:07:16 +01:00
Jen Herting
3b38e4345f
py-filterpy: new package (#20747) 2021-01-22 14:06:34 +01:00
Tomoyasu Nojiri
f6db2f4da4
cnvnator: add -lcrypto to Makefile. (#21209) 2021-01-22 13:50:05 +01:00
René Widera
4b466d06f4
isaac: add v1.5.1 and v1.5.2 (#21216) 2021-01-22 13:11:28 +01:00
arjun-raj-kuppala
f41317d8b2
AMD ROCm: Bump rocm-tensile with 3.9.0, 3.10.0, 4.0.0 releases (#20439) 2021-01-22 13:07:36 +01:00
Dominik Gresch
ec7caefc69
Add Quantum ESPRESSO version 6.7. (#21192) 2021-01-22 09:58:30 +01:00
Harmen Stoppels
d42d9a619a
add patch for not linking to clang rt bulitin lib, and apply patches to 3.9.0 too (#20937) 2021-01-22 09:55:46 +01:00
Tom Payerle
f7064fa181
mumps: Fix for problematic src/makefile patch (#20590) (#20758)
* mumps: Fix for problematic src/makefile patch (#20590)

Minor change in src/Makefile between 5.2.0 and 5.3.3 causing patch to
break.  Split into 2 patchfiles

* mumps: Additional patch for fixing #20590

This is to fix issue wherein build fails on Ubuntu due to undefined
symbols, despite symbols being included in other libraries referenced
on the compilation line.  I believe the issue is that the inclusion
of libsmumps.so was (due to my original patch) causing
libmumps_common.so to be automatically loaded, but since libpords.so
was not also required, the error was occuring.  I have added libpords.so
along with libmumps_common.so to be explicit dependencies of
libsmumps.so, etc., which seems to resolve the issue.
2021-01-21 20:41:11 -08:00
mic84
9ed4eb7a9a
amrex: fix missing hdf5 dependency (#20714)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-01-21 16:16:55 -08:00
Kurt Sansom
06f65afdd5
hdf: build with gcc10 (#20773) 2021-01-21 17:07:28 -06:00