Commit graph

12009 commits

Author SHA1 Message Date
g-mathias
9c8d4be569
new plumed versions 2.5.5 and 2.6.1; bumped default to 2.5.5 (#17850)
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-08-03 23:15:57 -05:00
albestro
7154351860
HPX: fix wrong method name and use define/define_from_variant methods (#17851)
* bug fix: wrong method name

* refactoring using define_from_variant and define

* flake8 style fix

* revert change string format
2020-08-03 23:15:23 -05:00
Harmen Stoppels
9318029b63
Bump cmake (#17852) 2020-08-03 23:12:07 -05:00
mic84
1c4b6bad43
amrex:: new version 20.08 (#17856) 2020-08-03 23:08:42 -05:00
darmac
8e1e3ac8c3
canu: fix depends issue & using java instead of jdk (#17599)
* canu: fix depends issue & using java instead of jdk

* Update var/spack/repos/builtin/packages/canu/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-03 23:05:37 -05:00
darmac
a7f1565efb
Add new package: ycsb (#17788)
* Add new package: ycsb

* refine mongodb-async-driver jar path
2020-08-03 23:04:48 -05:00
darmac
1884822b56
Add new package: slider (#17799)
* Add new package: slider

* refine version check
2020-08-03 23:04:09 -05:00
darmac
0cc2377de6
Add new package: giraph (#17790)
* Add new package: giraph

* refine version check
2020-08-03 23:03:25 -05:00
Claire Guilbaud
ce7aefbb4f
Packages/py colorspacious (#17623)
* typo error correction

* Adding recipe for `colorspacious` (a python package)

* Copyright year changed

* revert last commit on basic_usage.rst

* better with a good description

* fix according to failed test

* Update var/spack/repos/builtin/packages/py-colorspacious/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-colorspacious/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-03 23:01:03 -05:00
Adam J. Stewart
a67a0e3181
py-astropy: add version 4.0.1.post1, update header finding (#17838)
* Add install tests
* Add pkgconfig dependency to find dependency headers (specifically
  wcslib)
2020-08-03 11:51:29 -07:00
Adam J. Stewart
8b50433cd7
ERFA (package): add version 1.7.0 (#17837) 2020-08-03 11:40:50 -07:00
Paul
4c97a0ea1c
Added Go 1.14.6 and 1.13.14 (#17574) 2020-08-03 09:42:05 -05:00
ketsubouchi
a480507a92
python: RPATH on fj (#17783)
* python: RPATH on fj

* python: patch _is_gcc
2020-08-02 22:53:14 -05:00
Francesco Di Natale
ac433134e5
Updates to jsonschema to include newer versions. (#17613)
* Additional versions of py-jsonschema.

* Tweak to force Maestro to use jsonschema@3.2.0:

* Correction of whitespace (flake8 error).

* Merges importlib's Python  version conditons

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-02 19:42:56 -05:00
Harmen Stoppels
e199f3f245
Add new versions of spfft (#17841)
* Add new versions of spfft

* Extend CudaPackage and use virtual fftw package

Co-authored-by: Simon Pintarelli <simon.pintarelli@cscs.ch>

* Add CUDA 11 compatibility note

* Depend on older cuda <= 10 for spfft <= 0.9.11

Co-authored-by: Simon Pintarelli <simon.pintarelli@cscs.ch>
2020-08-02 19:42:07 -05:00
René Widera
d560d83b76
fix isaac-server dependency (#17569)
isaac-server can not find jansson if jansson2.10+ is used.
2020-08-02 19:41:18 -05:00
Jon Rood
041fcbfa59
Gnuplot also depends on libsm with +wx. (#17575) 2020-08-02 16:46:42 -05:00
darmac
53b7f381c7
krb5: fix url parse and update versions (#17581) 2020-08-02 16:46:04 -05:00
darmac
044b9d3e85
mariadb: add depends package krb5 (#17583) 2020-08-02 16:45:05 -05:00
Harsh Bhatia
b25055c7e8
new package: ibm databroker (#17591) 2020-08-02 16:40:44 -05:00
Patrick Gartung
f29dd48101 Add bindist tests for macOS. 2020-08-02 13:51:14 -07:00
albestro
ef3338a49b
Improve HPX package management of coroutines implementation (#17654)
* introduce logic for boost+context dependency and generic_context variant

* fix OTF2 instrumentation minor problem

* default coroutine impl depends on platform

* fix flake8

* add reference to ~generic_coroutines conflict info

* Update var/spack/repos/builtin/packages/hpx/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-02 09:56:50 -05:00
Rémi Lacroix
8e6fe883eb
Octopus: Add support for version 10.0. (#17782)
* Octopus: Add support for version 10.0.

Fix compilation when using the MKL as a provider for BLAS/LAPACK. Octopus will now detect that the MKL also provides the FFTW API and will refuse to compile when both the FFTW library and the MKL are given to the configure script.

* Octopus: Add supported version range for libxc.
2020-08-02 09:55:08 -05:00
Todd Gamblin
b94a837760
berkeley-db: add version 18.1.40, update build options in package (#17839)
* berkeley-db: add version 18.1.40, update build options in package

* combine adamjstewart's changes

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-01 19:33:35 -05:00
Wouter Deconinck
7e6a77d907
New package: kassiopeia (#17742)
* [kassiopeia] New package

* [kassiopeia] Remove master branch, update dependencies

* Update var/spack/repos/builtin/packages/kassiopeia/package.py

Unable to test since I do not have a license to intel-parallel-studio, but I see no reason why it would not work if.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [kassiopeia] depends_on mpi

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [kassiopeia] cmake_args with self.spec.satisfies and elses

* [kassiopeia] args.extend -> args.append

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-01 17:40:21 -05:00
Simon Pintarelli
75f34126fc
h5py does not correctly recognize hdf5 version on Cray (#17831)
* h5py: explicitly specify version

hdf5@1.10.5 on Cray is wrongly detected as 1.8.4.

* Update var/spack/repos/builtin/packages/py-h5py/package.py

Thanks. Also had this first, then CI was complaining about line length ...

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-01 16:26:41 -05:00
Mark W. Krentel
b0eb771b19
elfutils: add version 0.180 (#17835) 2020-08-01 16:26:13 -05:00
Axel Huebl
7498336f3d
Hotfix: move CUDAHOSTCXX (#17826)
* Hotfix: move CUDAHOSTCXX

Set only in dependent packages.

* dependent compiler
2020-08-01 15:29:17 -05:00
darmac
3ea9b9a014
Add new package: findbugs (#17825) 2020-08-01 11:46:02 -05:00
darmac
52858be668
Openfst: upgrade version and gcc constraint (#17830)
* openfst: upgrade version and gcc constraint

* refine version format
2020-08-01 11:41:12 -05:00
Brian Van Essen
5c2b34e43b
cuDNN (package): add version 7.6.5.32-10.2-linux-ppc64le (#17821) 2020-07-31 17:48:03 -07:00
Harmen Stoppels
d4831181ea
Add libxc 5.0.0 (#17807)
With experimental CUDA support and some patches to make it compile.

Currently +shared and +cuda conflict, this has to be fixed upstream.
2020-07-31 18:01:39 -05:00
Michael Kuhn
346977f501
meson: Add 0.55.0 (#17816) 2020-07-31 18:01:12 -05:00
Adam J. Stewart
9d942df352
py-wheel: add new version (#17819) 2020-07-31 15:58:00 -07:00
Adam J. Stewart
89759cc1f1
py-setuptools: add new version (#17818) 2020-07-31 15:57:42 -07:00
Adam J. Stewart
4c35cc1b20
py-pip: add new version (#17817) 2020-07-31 15:57:27 -07:00
Adam J. Stewart
4aaa39d091 py-torchvision: add v0.7.0 2020-07-31 14:34:55 -07:00
Adam J. Stewart
58d383877d PyTorch: add v1.6.0 2020-07-31 14:32:56 -07:00
Adam J. Stewart
198ccfae4e Pandas: add v1.1.0 2020-07-31 14:20:17 -07:00
darmac
c2cd728e03
cp2k: support for aarch64 (#17786) 2020-07-31 16:17:31 -05:00
Brian Van Essen
46e7fbe120
LBANN: add versions, update CUDA support and dependencies (#17813)
* Update LBANN, Hydrogen, Aluminum to inherit CudaPackage
* Update CMake constraints: LBANN, Hydrogen, and Aluminum now require
  cmake@3.16.0: (better support for pthreads with nvcc)
* Aluminum: add variants for host-enabled MPI and RMA features in a
  MPI-GPU RDMA-enabled library
* NCCL: add versions 2.7.5-1, 2.7.6-1, and 2.7.8-1
* Hydrogen: add version 1.4.0
* LBANN: add versions 0.99 and 0.100
* Aluminum: add versions 0.4.0 and 0.5.0
2020-07-31 13:53:51 -07:00
Andrew W Elble
d89bc1d998
new package(s): py-gql (#17769)
* new package(s): py-gql

and related dependencies:
py-aiohttp
py-async-timeout
py-graphql-core
py-idna-ssl
py-multidict
py-websockets
py-yarl

new versions:
py-requests

* fixes

Co-authored-by: Andrew W Elble <aweits@skl-a-00.rc.rit.edu>
2020-07-31 14:54:25 -05:00
Rémi Lacroix
0303ef72ac
libxc: Add version 4.3.4. (#17781) 2020-07-31 14:48:48 -05:00
darmac
e938e439b9
Add new package: mongodb-async-driver (#17787) 2020-07-31 14:45:35 -05:00
darmac
8df17d3830
open-iscsi: refine runtime environment (#17789) 2020-07-31 14:43:40 -05:00
Xavier Delaruelle
c7e83a8375
environment-modules: add version 4.5.2 (#17795) 2020-07-31 14:42:08 -05:00
Andrew Gaspar
c436414352
Add Rust versions 1.45.1 and 1.44.1 (#17812) 2020-07-31 14:30:00 -05:00
darmac
b7e0fec5f0
Alluxio (package): update url, add versions (#17805)
* Add versions 2.2.1 and 2.2.0
* Remove version 2.1.0
* Add dependency on Java
2020-07-31 11:25:22 -07:00
Justin S
cab2af9a71
py-mixedhtseq: new package at 0.1.0 (#17702)
* py-mixedhtseq: new package at 0.1.0

* py-mixedhtseq: flake8 fixes
2020-07-31 11:58:53 -05:00
Justin S
da5bbe3cef
py-gpy: add 0.8.8 (#17548)
* py-gpy: add 0.8.8

* py-gpy: remove unneeded dep

* py-gpy: make cython build-only
2020-07-31 11:55:49 -05:00