Commit graph

709 commits

Author SHA1 Message Date
eugeneswalker
99f3716346
e4s: add and prefer boost +python +filesystem +iostreams +system (#35180) 2023-01-30 07:37:35 -08:00
eugeneswalker
48a63719b2
e4s oneapi: use oneapi@2023.0.0 (#34634) 2023-01-29 13:22:14 -08:00
eugeneswalker
9f5d9266e6
e4s: add power stack (#32710)
* e4s: restore builds builds

* gitlab ci: allow UO to build protected binaries for signing

* use newer image; comment out failing builds

* gitlab-ci: Some tweaks for e4s power builds

- fix tags (no longer require generate jobs to run on aws)
- fix resource requests for generation jobs resource requests
- remove SPACK_SIGNING_KEY from protected power build jobs
- update UO signing key path
- change the CDash build group to reflect stack name
- retry pipeline generation jobs *always*

* correct double packages: section

* gitlab-ci:script: modernize

* remove new gnu make, not for ppc64le

---------

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2023-01-29 10:53:02 -06:00
eugeneswalker
a82fe2010f
e4s: add cusz +cuda (#35004) 2023-01-23 09:15:39 -08:00
Alex Richert
ce8727cece
Add --exclude option to 'spack external find' (#35013)
* Add --exclude option to 'spack external find' to ignore user-specified external packages
* Update bash completion arg order for external find

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2023-01-21 15:43:20 -08:00
Zack Galbreath
91fd6d5a84
Allocate more memory for generate jobs in all stacks (#35040)
* Allocate more memory for generate jobs in all stacks
* Add a 60 minute timeout on generate jobs
2023-01-20 11:06:49 -07:00
eugeneswalker
6713f7feda
e4s: ecp-data-vis-sdk +rocm: remove redundant amdgpu_target specification (#35022) 2023-01-20 00:18:41 +00:00
Harmen Stoppels
a357a39963
depfile: --make-target-prefix -> --make-prefix (#35009)
Since SPACK_PACKAGE_IDS is now also "namespaced" with <prefix>, it makes
more sense to call the flag `--make-prefix` and alias the old flag
`--make-target-prefix` to it.
2023-01-19 14:58:34 +01:00
eugeneswalker
fed4eb2526
e4s ci: clean up unnecessary constraints (#35006) 2023-01-18 21:23:15 -08:00
eugeneswalker
1bf1c7de76
e4s: add sz3 (#35007) 2023-01-18 22:21:30 -06:00
eugeneswalker
ae5408de9a
e4s ci: add veloc (#35003) 2023-01-18 16:48:23 -08:00
Harmen Stoppels
fce95e2efb
license year bump (#34921)
* license bump year
* fix black issues of modified files
* mypy
* fix 2021 -> 2023
2023-01-18 14:30:17 -08:00
eugeneswalker
8eb803ab4c
e4s: add py-h5py ~mpi variant (#34998) 2023-01-18 19:28:47 +00:00
Harmen Stoppels
f050b1cf78
depfile: variable with all identifiers (#34678)
With the new variable [prefix/]SPACK_PACKAGE_IDS you can conveniently execute
things after each successful install.

For example push just-built packages to a buildcache

```
SPACK ?= spack
export SPACK_COLOR = always
MAKEFLAGS += -Orecurse
MY_BUILDCACHE := $(CURDIR)/cache

.PHONY: all clean

all: push

ifeq (,$(filter clean,$(MAKECMDGOALS)))
include env.mk
endif

# the relevant part: push has *all* example/push/<pkg identifier> as prereqs
push: $(addprefix example/push/,$(example/SPACK_PACKAGE_IDS))
	$(SPACK) -e . buildcache update-index --directory $(MY_BUILDCACHE)
	$(info Pushed everything, yay!)

# and each example/push/<pkg identifier> has the install target as prereq,
# and the body can use target local $(HASH) and $(SPEC) variables to do
# things, such as pushing to a build cache
example/push/%: example/install/%
	@mkdir -p $(dir $@)
	$(SPACK) -e . buildcache create --allow-root --only=package --unsigned --directory $(MY_BUILDCACHE) /$(HASH) # push $(SPEC)
	@touch $@

spack.lock: spack.yaml
	$(SPACK) -e . concretize -f

env.mk: spack.lock
	$(SPACK) -e . env depfile -o $@ --make-target-prefix example

clean:
	rm -rf spack.lock env.mk example/
``
2023-01-18 19:19:46 +01:00
Harmen Stoppels
3489cc0a9b
Refer to mirrors by name, path, or url (#34891)
With this change we get the invariant that `mirror.fetch_url` and
`mirror.push_url` return valid URLs, even when the backing config
file is actually using (relative) paths with potentially `$spack` and
`$env` like variables.

Secondly it avoids expanding mirror path / URLs too early,
so if I say `spack mirror add name ./path`, it stays `./path` in my
config. When it's retrieved through MirrorCollection() we
exand it to say `file://<env dir>/path` if `./path` was set in an
environment scope.

Thirdly, the interface is simplified for the relevant buildcache
commands, so it's more like `git push`:

```
spack buildcache create [mirror] [specs...]
```

`mirror` is either a mirror name, a path, or a URL.

Resolving the relevant mirror goes as follows:
    
- If it contains either / or \ it is used as an anonymous mirror with
   path or url.
- Otherwise, it's interpreted as a named mirror, which must exist.

This helps to guard against typos, e.g. typing `my-mirror` when there
is no such named mirror now errors with:

```
$ spack -e . buildcache create my-mirror
==> Error: no mirror named "my-mirror". Did you mean ./my-mirror?
```

instead of creating a directory in the current working directory. I
think this is reasonable, as the alternative (requiring that a local dir
exists) feels a bit pendantic in the general case -- spack is happy to
create the build cache dir when needed, saving a `mkdir`.

The old (now deprecated) format will still be available in Spack 0.20,
but is scheduled to be removed in 0.21:

```
spack buildcache create (--directory | --mirror-url | --mirror-name) [specs...]
```

This PR also touches `tmp_scope` in tests, because it didn't really
work for me, since spack fixes the possible --scope values once and
for all across tests, so tests failed when run out of order.
2023-01-16 10:14:41 -08:00
eugeneswalker
886ea7c490
e4s: add py-h5py (#34914) 2023-01-16 15:52:24 +00:00
eugeneswalker
b9a16a599a
e4s ci: py-libensemble: activate variants (#34915) 2023-01-16 10:57:28 +01:00
Todd Gamblin
d4e714bb2e
spack list: add --count option (#34950)
Sometimes I just want to know how many packages of a certain type there are.

- [x] add `--count` option to `spack list` that output the number of packages that
      *would* be listed.

```console
> spack list --count
6864
> spack list --count py-
2040
> spack list --count r-
1162
```
2023-01-14 16:08:40 -08:00
kwryankrattiger
229ee7cad9
Paraview rocm (#34790)
* paraview: add `rocm` variant

This conflicts with CUDA and requires at least ParaView 5.11.0. More
dependencies are also needed.

* E4S: Add ParaView for ROCm and CUDA stacks

* DAV SDK: Update ParaView version and GPU variants

* Verify using hipcc vs amdclang++ for newer hip

Co-authored-by: Ben Boeckel <ben.boeckel@kitware.com>
2023-01-13 12:41:57 -06:00
Mike VanDenburgh
ea6608edde
Bump memory requests for e4s/ml generate jobs (#34648) 2023-01-11 10:41:42 -07:00
eugeneswalker
9d70f6e6c7
protected runner jobs at uo: trust e4s-uo signing key (#34828) 2023-01-10 18:18:38 -07:00
Scott Wittenburg
8f6f77ac9f
gitlab ci: fix tags for pipeline generation jobs (#34789)
Gitlab does not merge lists when a job extends two other definitions
that include the same list (e.g. tags).  Also, it merges dictionaries
as long as the keys are distinct, but just takes the last mentioned
value when there are key collisions.

This change makes sure that when different tags are needed by a
pipeline, the ones we want are actually provided.  It also changes
the example stack to better follow this pattern so we do not lead
developers astray in the future.
2023-01-10 10:06:26 -07:00
Wileam Y. Phan
0f7f600d1f
Add CUDA 12.0 (#34664) 2023-01-10 11:51:23 +01:00
eugeneswalker
9283a94ee4
e4s ci: use 2023-01-01 runner image (#34827) 2023-01-10 10:47:28 +00:00
Harmen Stoppels
b9f48da560
e4s: move default values for rocm/cuda arch into packags:all:variants (#34772) 2023-01-04 16:09:14 +01:00
Massimiliano Culpo
3d961b9a1f
spack graph: rework to use Jinja templates and builders (#34637)
`spack graph` has been reworked to use:

- Jinja templates
- builder objects to construct the template context when DOT graphs are requested. 

This allowed to add a new colored output for DOT graphs that highlights both
the dependency types and the nodes that are needed at runtime for a given spec.
2022-12-27 15:25:53 +01:00
Adam J. Stewart
eb67497020
ML CI: Linux x86_64 (#34299)
* ML CI: Linux x86_64

* Update comments

* Rename again

* Rename comments

* Update to match other arches

* No compiler

* Compiler was wrong anyway

* Faster TF
2022-12-22 11:31:40 -06:00
eugeneswalker
7e836b925d
e4s: disable mac stack due to binary relocation issue#32571 (#34560) 2022-12-17 10:53:15 +00:00
Zack Galbreath
aa8e1ba606
gitlab ci: more resources for slow builds (#34505) 2022-12-15 14:35:54 -07:00
Harmen Stoppels
e055dc0e64
Use file paths/urls correctly (#34452)
The main issue that's fixed is that Spack passes paths (as strings) to
functions that require urls. That wasn't an issue on unix, since there
you can simply concatenate `file://` and `path` and all is good, but on
Windows that gives invalid file urls. Also on Unix, Spack would not deal with uri encoding like x%20y for file paths. 

It also removes Spack's custom url.parse function, which had its own incorrect interpretation of file urls, taking file://x/y to mean the relative path x/y instead of hostname=x and path=/y. Also it automatically interpolated variables, which is surprising for a function that parses URLs.

Instead of all sorts of ad-hoc `if windows: fix_broken_file_url` this PR
adds two helper functions around Python's own path2url and reverse.

Also fixes a bug where some `spack buildcache` commands
used `-d` as a flag to mean `--mirror-url` requiring a URL, and others
`--directory`, requiring a path. It is now the latter consistently.
2022-12-13 23:44:13 +01:00
Scott Wittenburg
675afd884d
gitlab ci: more resources for paraview and py-torch (#34412) 2022-12-09 11:58:37 -07:00
Todd Gamblin
d991ec90e3
new command: spack pkg grep to search package files (#34388)
It's very common for us to tell users to grep through the existing Spack packages to
find examples of what they want, and it's also very common for package developers to do
it. Now, searching packages is even easier.

`spack pkg grep` runs grep on all `package.py` files in repos known to Spack. It has no
special options other than the search string; all options passed to it are forwarded
along to `grep`.

```console
> spack pkg grep --help
usage: spack pkg grep [--help] ...

positional arguments:
  grep_args  arguments for grep

options:
  --help     show this help message and exit
```

```console
> spack pkg grep CMakePackage | head -3
/Users/gamblin2/src/spack/var/spack/repos/builtin/packages/3dtk/package.py:class _3dtk(CMakePackage):
/Users/gamblin2/src/spack/var/spack/repos/builtin/packages/abseil-cpp/package.py:class AbseilCpp(CMakePackage):
/Users/gamblin2/src/spack/var/spack/repos/builtin/packages/accfft/package.py:class Accfft(CMakePackage, CudaPackage):
```

```console
> spack pkg grep -Eho '(\S*)\(PythonPackage\)' | head -3
AwsParallelcluster(PythonPackage)
Awscli(PythonPackage)
Bueno(PythonPackage)
```

## Return Value

This retains the return value semantics of `grep`:
* 0  for found,
* 1  for not found
* >1 for error

## Choosing a `grep`

You can set the ``SPACK_GREP`` environment variable to choose the ``grep``
executable this command should use.
2022-12-09 10:07:54 -08:00
John W. Parent
0e69710f41
Windows: reenable unit tests (#33385)
Unit tests on Windows are supposed to pass for any PR to pass CI.
However, the return code for the unit test command was not being
checked, which meant this check was always passing (effectively
disabled). This PR

* Properly checks the result of the unit tests and fails if the
  unit tests fail
* Fixes (or disables on Windows) a number of tests which have
  "drifted" out of support on Windows since this check was
  effectively disabled
2022-12-09 13:27:46 +00:00
Todd Gamblin
606eef43bd
bugfix: spack load shell test can fail on macos (#34419)
At some point the `a` mock package became an `AutotoolsPackage`, and that means it
depends on `gnuconfig` on macOS. This was causing one of our shell tests to fail on
macOS because it was testing for `{a.prefix.bin}:{b.prefix.bin}` in `PATH`, but
`gnuconfig` shows up between them.

- [x] simplify the test to check `spack load --sh a` and `spack load --sh b` separately
2022-12-09 10:36:54 +00:00
Massimiliano Culpo
4c05fe569c
Bootstrap most of Spack dependencies using environments (#34029)
This commit reworks the bootstrapping procedure to use Spack environments 
as much as possible.

The `spack.bootstrap` module has also been reorganized into a Python package. 
A distinction is made among "core" Spack dependencies (clingo, GnuPG, patchelf)
and other dependencies. For a number of reasons, explained in the `spack.bootstrap.core`
module docstring, "core" dependencies are bootstrapped with the current ad-hoc
method. 

All the other dependencies are instead bootstrapped using a Spack environment
that lives in a directory specific to the interpreter and the architecture being used.
2022-12-06 11:54:02 +01:00
Andrew W Elble
588d2e295f
py-alphafold: update to 2.2.4, update dependencies (#33876)
* py-alphafold: update to 2.2.4, update dependencies

* style
2022-12-02 22:12:06 +00:00
Greg Becker
99044bedd7
patch command: add concretizer args (#34282)
* patch command: add concretizer args
* tab completion
2022-12-02 14:02:20 -08:00
eugeneswalker
f452741e3d
e4s ci: use 2022-12-01 runner images (#34212) 2022-11-30 09:52:30 -08:00
eugeneswalker
99b68e646d
e4s ci: hpx: set max_cpu_count=512 (#33977) 2022-11-30 09:16:57 -08:00
kwryankrattiger
33422acef0
CI: Update Data and Vis SDK Stack (#34009)
* CI: Update Data and Vis SDK Stack

* Update image to match target deployments (E4S)
* Enable all packages
* Test supported variants of ParaView and VisIt

* Sensei: Update Python hint for newer cmake

* Sensei: add Python3 hint
2022-11-29 14:49:55 -07:00
eugeneswalker
587488882a
e4s ci: add hdf5-vol-async; remove expired comments (#34110) 2022-11-28 19:35:42 +00:00
Greg Becker
451e3ff50b
warn about removal of deprecated format strings (#34101)
* warn about removal of deprecated format strings

Co-authored-by: becker33 <becker33@users.noreply.github.com>
2022-11-28 10:03:49 -08:00
kwryankrattiger
5d2c9636ff
E4S: Conservatively add ecp-data-vis-sdk (#33621)
* E4S: Conservatively add ecp-data-vis-sdk

* Remove ascent from CUDA SDK stack to stop hanging on Dray

* Adios2: Newer FindPython uses Python_EXECUTABLE
2022-11-23 11:01:30 -08:00
Michael Kuhn
0fd3c9f451
cmd/checksum: allow adding new versions to package (#24532)
This adds super-lazy maintainer mode to `spack checksum`: Instead of
only printing the new checksums to the terminal, `-a` and
`--add-to-package` will add the new checksums to the `package.py` file
and open it in the editor afterwards for final checks.
2022-11-22 16:30:49 -08:00
Massimiliano Culpo
bd198312c9
Revert "Warn about removal of deprecated format strings (#33829)" (#34056)
This reverts commit 7f9af8d4a0.
2022-11-22 12:35:36 +01:00
Greg Becker
7f9af8d4a0
Warn about removal of deprecated format strings (#33829)
Co-authored-by: becker33 <becker33@users.noreply.github.com>
2022-11-22 10:56:57 +01:00
Massimiliano Culpo
45b4cedb7e
spack find: remove deprecated "--bootstrap" option (#34015) 2022-11-19 16:09:34 +01:00
Massimiliano Culpo
da0a6280ac
Remove deprecated subcommands from "spack bootstrap" (#33964)
These commands are slated for removal in v0.20
2022-11-17 12:42:57 +01:00
Harmen Stoppels
af74680405
depfile: improve tab completion (#33773)
This PR allows you to do:

```
spack env create -d .
spack -e . add python
spack -e . concretize
spack -e . env depfile -o Makefile

make in<tab>              # -> install
make install-<tab>        # -> install-deps/
make install-deps/py<tab> # -> install-deps/python-x.y.z-hash
make install/zl<tab>      # -> install/zlib-x.y.z-hash

make SP<tab>              # -> make SPACK
make SPACK_<tab>          # -> make SPACK_INSTALL_FLAGS=
```
2022-11-15 18:03:17 +01:00
Harmen Stoppels
90fb16033e
gitlab: report load in generate job (#33888) 2022-11-15 13:21:21 +01:00