hlrs-software-stack/spack
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1879 commits

Author SHA1 Message Date
Denis Davydov
987fb137f9 trilinos: don't hardcode blas/lapack names 2016-07-16 07:31:38 +02:00
Denis Davydov
514c61b8fe hypre: don't hardcode blas/lapack/mpi; optionally run tests 2016-07-16 07:28:31 +02:00
Todd Gamblin
069de3f008 Merge pull request #1223 from glennpj/tidyr 
New package - r-tidyr
 2016-07-12 00:23:09 -07:00
Todd Gamblin
04b3d8d86f Merge pull request #1222 from glennpj/libxml2 
Use the site_packages_dir from the Python class
 2016-07-12 00:22:45 -07:00
Glenn Johnson
502d15fd3b New package - r-tidyr 
Tools for changing the layout of data sets.
 2016-07-11 21:12:28 -05:00
Glenn Johnson
5e323b052a Remove import of os 
The import of `os` is no longer needed.
 2016-07-11 20:21:25 -05:00
Glenn Johnson
81daaddfe9 Use the site_packages_dir from the Python class 
It is not necessary to set site_packages_dir in this package as it is
already provided by the Python package class.
 2016-07-11 20:08:30 -05:00
Todd Gamblin
15790d7018 Merge pull request #1207 from davydden/pkg/dealii_update_petsc37 
dealii: update for petsc37
 2016-07-11 15:32:32 -07:00
Glenn Johnson
1b08296392 Fix flake8 error 2016-07-11 17:22:31 -05:00
Glenn Johnson
8de84b5d8a Fix error reported on Google Groups list 
Fixes the reported `TypeError: not enough arguments for format string`
error.
 2016-07-11 16:56:26 -05:00
Todd Gamblin
efdcd199c1 Merge pull request #1218 from glennpj/dplyr 
New package - r-dplyr
 2016-07-11 13:19:09 -07:00
Glenn Johnson
d99fbbb68f New package - r-lubridate 
Functions to work with date-times and timespans.
 2016-07-11 14:59:47 -05:00
Glenn Johnson
11960e53ef New package - r-dplyr 
This brings in dplyr and dependencies.
 2016-07-11 14:50:33 -05:00
Todd Gamblin
255d05a9c1 Merge pull request #1214 from glennpj/rfilter 
Filter compilers for R
 2016-07-11 11:37:39 -07:00
Glenn Johnson
664bdd359f Filter compilers for R 
This adds a filter_compilers function to have the Makeconf file for R
point to the actual compilers rather than the spack wrappers. Also added
version 3.3.1.
 2016-07-11 13:29:43 -05:00
Todd Gamblin
691e628726 Merge pull request #1206 from davydden/pkg/slepc_371_fix 
slepc: fix install_name for binaries on macOS for 3.7.1
 2016-07-11 09:14:53 -07:00
Paul Hopkins
0d3a52ae29 Fix typo in Octave variant suitesparse 2016-07-11 16:00:19 +01:00
Denis Davydov
1b553f2b21 dealii: fix directory structure 2016-07-11 13:21:16 +02:00
Denis Davydov
f14cd67446 dealii: flake8 fixes 2016-07-11 10:56:57 +02:00
Denis Davydov
84afaf385f dealii: run tests only when self.run_tests=true 2016-07-11 10:22:29 +02:00
Denis Davydov
1cc6e42682 dealii: add petsc/slepc 3.7 support 2016-07-11 10:20:15 +02:00
Denis Davydov
38550bbc1b slepc: fix install_name for binaries on macOS for 3.7.1 2016-07-11 10:17:09 +02:00
Todd Gamblin
b0f4052bd8 Merge pull request #1169 from davydden/feature/install_argument_tests_petsc_fixes 
--run-tests install argument and petsc fixes
 2016-07-09 12:10:16 -07:00
Denis Davydov
e482994a15 petsc: add -lm when building example 2016-07-09 08:12:34 +02:00
Erik Schnetter
c8137194f0 Update Cereal to 1.2.0 2016-07-08 15:20:09 -04:00
Todd Gamblin
f04258eb29 Merge pull request #1192 from SteVwonder/develop 
docbook-xml: replace 'cp -t' with install_tree
 2016-07-08 11:09:41 -07:00
Todd Gamblin
1fa67e458c Merge pull request #1194 from SteVwonder/lua-fix 
lua: switch self.version[:2] to .up_to(2)
 2016-07-08 11:09:18 -07:00
Stephen Herbein
bb8a8ecda3 json-c: fix build by running serially 2016-07-08 10:39:47 -07:00
Stephen Herbein
1a1bf31032 lua: switch self.version[:2] to .up_to(2) 
Previous package would not install correctly, would throw:
return os.path.join('share', 'lua', '%d.%d' % self.version[:2])
TypeError: %d format: a number is required, not Version
 2016-07-07 18:58:52 -07:00
Stephen Herbein
1b53452618 docbook-xml: replace 'cp -t' with install_tree 
'-t' is not supported by the default cp on Mac OS X

replace with install/install_tree

cannot just use install_tree since shutil.copytree insists that the dst
directory not exist
 2016-07-07 17:41:53 -07:00
Todd Gamblin
6bb31a9a4c Merge pull request #1175 from davydden/pkg/arpack-3.4.0 
Pkg/arpack 3.4.0
 2016-07-06 14:45:21 -07:00
Todd Gamblin
91da3d8e64 Merge pull request #1174 from LLNL/bugfix/github-1172-suite-sparse 
Bugfix/GitHub 1172 suite sparse
 2016-07-06 14:35:59 -07:00
Todd Gamblin
c6e89d9283 Merge pull request #1180 from davydden/pkg/oce_update_and_fix 
oce: add 0.17.2; fix running tests
 2016-07-06 14:27:05 -07:00
Denis Davydov
14cef6eab8 oce: flake8 fixes 2016-07-06 22:51:20 +02:00
Denis Davydov
c096bb332a petsc: fix unit tests 2016-07-06 22:45:43 +02:00
Greg Lee
3df0f1902d clean up suitesparse deps 2016-07-06 12:15:20 -07:00
Greg Lee
4e27d91351 flake 8 fixes 2016-07-06 11:51:32 -07:00
Denis Davydov
57eaea2e8c oce: add 0.17.2; fix running tests 2016-07-06 20:35:59 +02:00
Paul Hopkins
61fe89bda0 Add ucs4 unicode variant to Python package 2016-07-06 18:29:54 +01:00
Denis Davydov
3d755a148b arpack-ng: fix binaries for macOS 2016-07-06 18:30:38 +02:00
Denis Davydov
c8fc56686c arpack-ng: fix corrupted parpack_cmake.patch 2016-07-06 13:42:59 +02:00
Denis Davydov
63e45c586c arpack-ng: flake8 fixes and minor update of incode comments 2016-07-06 13:27:02 +02:00
Denis Davydov
a47b3ba01b arpack-ng: use spec['mpi'].mpif77 2016-07-06 13:23:51 +02:00
Denis Davydov
f5f7abd71f arpack-ng: add 3.4.0 with cmake build 2016-07-06 12:59:42 +02:00
Greg Lee
4c063c6055 kludge to get suite-sparse-4.5.1 to link with -lstdc++ 2016-07-05 13:48:32 -07:00
Greg Lee
976b2b4d25 added suitesparse version 4.5.3 2016-07-05 13:45:22 -07:00
Erik Schnetter
79b3ef0362 Don't enforce hdf5~mpi 2016-07-05 10:58:11 -04:00
Todd Gamblin
d687e332ad Fix compile bugs for gcc on Mac OS X with macports. 
- add macports to things that are cleaned out of the environment.
- linker incompatibilities cause issues with packages like OpenSSL.
- also clean up NOQA stuff in OpenSSL
 2016-07-04 22:59:02 -07:00
Todd Gamblin
f2a692c515 Merge pull request #1163 from epfl-scitas/fixes/reserved_name_for_system_packages 
fixes : reserved name for system packages
 2016-07-04 21:25:50 -07:00
Todd Gamblin
d166c04db5 Merge pull request #1166 from glennpj/rstan 
New package - RStan
 2016-07-04 21:23:10 -07:00