Commit graph

29523 commits

Author SHA1 Message Date
Manuela Kuhn
2936573fc6
py-glmsingle: add 1.1 (#35311) 2023-02-03 09:28:16 -06:00
Rémi Lacroix
5d4c250354
CMake: Add version 3.25.2 (#35196) 2023-02-02 20:27:56 -08:00
Adam J. Stewart
b0913b1bf8
py-torchmetrics: add v0.11.1 (#35260) 2023-02-02 18:32:46 -08:00
John W. Parent
c49e2e5620
NMake builder: fix incorrect variable reference (#34937) 2023-02-02 16:34:35 -08:00
Adam J. Stewart
60624265f8
py-black: add v23.1.0 (#35279)
* py-black: add v23.1.0
* py-packaging: add v23.1.0
2023-02-02 14:32:37 -08:00
Larry Knox
79aa9e9c87
Update to latest version. (#35309)
Update hdf5-vol-external-passthrough to latest version compatible with HDF5 1.14
2023-02-02 16:16:56 -06:00
Wouter Deconinck
f2b0c1deab
py-minkowskiengine: new package (sparse tensor autodiff by Nvidia) (#35302)
* py-minkowskiengine: new package (sparse tensor autodiff by Nvidia)

This python package (with cuda support) provides torch support for sparse
tensors. The `pybind11` headers are not found without the patch to `setup.py`.

* [@spackbot] updating style on behalf of wdconinc

* py-minkowskiengine: depends_on numpy, pybind11 type=link; no patch

* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-02-02 16:03:01 -06:00
John W. Parent
7d50680d9c
zlib package: fix build on Windows (#35103) 2023-02-02 13:53:16 -08:00
snehring
defa4a2340
py-getorganelle: rename to getorganelle and add version 1.7.7.0 (#35270)
* py-getorganelle: rename to getorganelle and add version 1.7.7.0

* py-getorganelle: deprecating package
2023-02-02 13:13:32 -06:00
Manuela Kuhn
1e1d1ec43b
py-nilearn: add 0.10.0 (#35303) 2023-02-02 13:02:19 -06:00
Rémi Lacroix
0e41788812
LAMMPS: Package KIM requires CURL after version 20190329 (#35182) 2023-02-02 06:12:27 -08:00
Massimiliano Culpo
ddecf07045
Use the maintainers directive in all packages (#35201) 2023-02-01 21:07:25 -08:00
Weiqun Zhang
9865a42b20
amrex: add v23.02 (#35286) 2023-02-01 15:32:38 -08:00
Jordan Galby
2432be5911
glib: 2.74: needs pcre2@10.34: (#35283) 2023-02-01 12:53:03 -08:00
Timothy Brown
002bd8d20b
[WRF] Adding new versions (#35244)
* [WRF] Adding new versions.
* Style fixes.
2023-02-01 12:29:35 -08:00
Glenn Johnson
eac04af0e7
fastqc: Use the spack built perl (#35276)
The fastqc script was using the system perl. This PR sets the script to
use the spack built/provided perl. This PR also removes the code that
adds the java path. That should be handled by module loading as far as I
know.
2023-02-01 09:47:10 -08:00
Larry Knox
448bd31c87
Add hdf5 versions 1.14.0, develop-1.14 and update develop version from develop-1.13 to develop-1.15 (#34734)
* Add HDF5 version 1.13.3.

* Remove maintainers no longer with The HDFGroup.

* Add version hdf5-vol-async@1.4

* Add HDF5 version 1.14.0, develop-1.14, develop-1.15.
Add missing conflicts for api version and develop versions.

* Add conflicts statement to hdf5/package.py to avoid building hdf5 with
MPICH 4.0.x versions with bug that causes testphdf5 test to fail.

* Add patch to call find_package(MPI) for dependent packages not finding
it, not having called it themselves.

* Remove language components from find_package(MPI) in
hdf5_1_14_0_config_find_mpi.patch.

* Add HDF5 version 1.14.0, develop-1.14, develop-1.15.
Add missing conflicts for api version and develop versions.

* Add conflicts statement to hdf5/package.py to avoid building hdf5 with
MPICH 4.0.x versions with bug that causes testphdf5 test to fail.

* Add patch to call find_package(MPI) for dependent packages not finding
it, not having called it themselves.

* Remove language components from find_package(MPI) in
hdf5_1_14_0_config_find_mpi.patch.

* Don't guard ParaView patch on HDF5 variant

ParaView always needsd  HDF5 and ignores the variant.

* py-h5py: Newer versions of HDF5 introduce breaking API changes

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
2023-02-01 09:17:17 -06:00
Massimiliano Culpo
46466302a9
Pin black to 22.12.0 to avoid spurious style changes (#35282)
We need to sync changes on major versions with
spackbot, to avoid the bot saying everything is
allright and have CI failing nonetheless.
2023-02-01 15:45:12 +01:00
Erik Heeren
5e39acea16
py-equation: new package (#35198)
* py-equation: new package

* py-equation: add variants for extra dependencies
2023-02-01 00:02:11 -06:00
Thomas Bouvier
cfdf0b6987
nccl: v2.15.5-1, v2.16.2-1 (#35248)
* `nccl`: v2.15.5-1, v2.16.2-1
* Fix wrong sha256
* Revert checksums (after GitHub has algorithm change reverted)
2023-01-31 19:17:20 -08:00
Erik Schnetter
6be6935671
libffi: New version 3.4.4 (#35087) 2023-01-31 16:46:41 -08:00
eugeneswalker
68233db9f6
Revert "flex%oneapi@2023.0.0: -Wno-error=implicit-function-declaration (#34900)" (#35181)
This reverts commit 62f83dfb6d.
2023-01-31 16:37:10 -08:00
renjithravindrankannath
aea2c73b04
Adding rocm-opencl prefix lib path to LD_LIBRARY_PATH for run_environment (#35011) 2023-01-31 16:26:42 -08:00
Harmen Stoppels
5dc5db6679
Fix awscli and deps (#35158)
* py-docutils/py-pyyaml specify python 3.11 compat

* bump awscli / py-botocore

* fix botocore again

* review fixes

* .
2023-01-31 13:32:53 -08:00
Alan Williams
51702a725b
Add trilinos-solvers variant to nalu-wind package. (#35267)
* Add trilinos-solvers variant to nalu-wind package.
   This allows nalu-wind to be built against a trilinos installation
   which doesn't have amesos2, belos, ifpack2, or muelu enabled, if
   the nalu-wind user provides the spec 'nalu-wind@master~trilinos-solvers'
   Support for these solver-packages remains on by default.
* Fixed a style issue reported by CI.
* Incorporate change in wording suggested from review comments.
   ... to clarify that at least one, or both, of hypre and/or
   trilinos-solvers must be enabled. The error condition is if
   both are disabled.
* That style checker is picky...
* It really did want a trailing comma...
2023-01-31 12:42:43 -08:00
Erik Heeren
931c0edaf4
py-munkres: new package (#35259) 2023-01-31 13:41:23 -06:00
eugeneswalker
689bdd6f36
strumpack +rocm: set CMAKE_CXX_COMPILER to hipcc (#35153)
* strumpack +rocm: set CMAKE_CXX_COMPILER to hipcc

* strumpack@7.0.1+rocm^mpich: patch in upstream commit
2023-01-31 10:51:02 -08:00
Erik Heeren
a426db06e7
py-matplotlibscalebar: new package (#35242)
* py-matplotlibscalebar: new package

* py-matplotlibscalebar: style

* py-matplotlib-scalebar: review remarks
2023-01-31 08:27:16 -08:00
Erik Heeren
4b12d015e1
py-jinja2-cli: new package (#35238)
* py-jinja2-cli: new package

* Update var/spack/repos/builtin/packages/py-jinja2-cli/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-31 08:17:17 -08:00
Jen Herting
ecd4eac184
[py-protoc-gen-swagger] new package (#35241)
* [py-protoc-gen-swagger] new package

* [@spackbot] updating style on behalf of qwertos

---------

Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2023-01-30 15:20:51 -08:00
Jean-Baptiste Skutnik
4d502c8ff7
Update py-docker package (#35217)
* Add py-docker@5:

* [@spackbot] updating style on behalf of spoutn1k

* Ignore `tls` variant

* Update var/spack/repos/builtin/packages/py-docker/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* `py-docker`: `py-paramiko` version fix

---------

Co-authored-by: spoutn1k <spoutn1k@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-30 15:20:04 -08:00
kent-cheung-arm
227c6061e5
arm-forge: add 22.1.3 (#35200) 2023-01-30 12:36:39 -08:00
Adam J. Stewart
3453f59ba3
py-fiona: add v1.9.0 (#35247) 2023-01-30 13:56:25 -06:00
Alex Richert
3201b4e2a1
HDF5 static (#34577)
* Add HDF5 static support for netcdf-c
* Update var/spack/repos/builtin/packages/hdf5/package.py
   Apply pkgconfig fix for all libraries, not just lz

Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>

* Update package.py
   Fix pkg config templates
* remove subprocess+2 lines
* Try netcdf-c changes only

Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>
2023-01-30 11:51:07 -08:00
Adam J. Stewart
80d26168b5
py-torchgeo: add v0.4.0 (#35155)
* py-torchgeo: add v0.4.0
* Add missing java dep
2023-01-30 11:47:10 -08:00
Adam J. Stewart
67040e79c5
py-protobuf: various updates (#35188) 2023-01-30 13:17:31 -06:00
Adam J. Stewart
a116775ff3
py-shapely: add v2.0.1 (#35246) 2023-01-30 11:08:08 -08:00
Erik Heeren
de2aaeb26f
py-mariadb: new package (#35240)
* py-mariadb: new package

* py-mariadb: style
2023-01-30 13:07:15 -06:00
Erik Heeren
830e3211e5
py-hjson: fix typo in latest version (#35234) 2023-01-30 12:49:07 -06:00
Tamara Dahlgren
6b3b7f8b7f
Bugfix: Update Petsc Python dependency (#35216)
* Bugfix: Update Petsc python dependency for at least 3.18:
* Update var/spack/repos/builtin/packages/petsc/package.py

Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2023-01-30 10:21:50 -08:00
eugeneswalker
99f3716346
e4s: add and prefer boost +python +filesystem +iostreams +system (#35180) 2023-01-30 07:37:35 -08:00
Cory Bloor
4f6ef3b698
rocblas: remove unnecessary conflicts (#35232)
The gfx906:xnack- and gfx908:xnack- targets were introduced in ROCm 4.1
and replaced gfx906 and gfx908 as default build targets, but the library
can still be built for gfx906 and gfx908 if requested.
2023-01-30 16:08:36 +01:00
Ken Raffenetti
2dc020af31
mpich: add 4.0.3 and 4.1 releases (#35218) 2023-01-30 14:01:13 +01:00
snehring
17f2d66285
montage: fixing compilation issues for newer gcc versions (#35220) 2023-01-30 13:57:41 +01:00
simonleary-umass-edu
32f480936a
apptainer: update constraint on go dependency (#35230) 2023-01-30 13:56:52 +01:00
Satish Balay
481b598963
hypre: Update URL using citation instructions from https://github.com/hypre-space/hypre/wiki/Citing-hypre (#35225) 2023-01-30 11:29:06 +01:00
John W. Parent
4b186df5b4
adios2: allow building on Windows (#35102) 2023-01-30 11:15:54 +01:00
aleixrocks
f4dac7cd4c
OmpSs: add v2022.11 (#35228) 2023-01-30 11:11:36 +01:00
eugeneswalker
48a63719b2
e4s oneapi: use oneapi@2023.0.0 (#34634) 2023-01-29 13:22:14 -08:00
Alec Scott
f576b4b6c5
gmake: Fix too many levels of symbolic links error (#35224)
* gedit: Fix too many levels of symlinks error

* Fix package formatting with black
2023-01-29 15:00:35 -06:00